Sequence details NCBI ID: XM_004874977.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Hcfc1
Gene Name host cell factor C1 (VP16-accessory protein), transcript variant X3
Entrez Gene ID 101697902

Database interlinks

Part of NW_004624946.1 (Scaffold)

For more information consult the page for NW_004624946.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

HCFC1 ENSCPOG00000014203 (Guinea pig)

Gene Details

host cell factor C1 (VP16-accessory protein)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000012795, Guinea pig)

Protein Percentage 92.86%
CDS Percentage 88.55%
Ka/Ks Ratio 0.08108 (Ka = 0.0408, Ks = 0.5028)

HCFC1 ENSG00000172534 (Human)

Gene Details

host cell factor C1 (VP16-accessory protein)

External Links

Gene Match (Ensembl Protein ID: ENSP00000309555, Human)

Protein Percentage 94.26%
CDS Percentage 88.29%
Ka/Ks Ratio 0.05766 (Ka = 0.0323, Ks = 0.5604)

Hcfc1 ENSMUSG00000031386 (Mouse)

Gene Details

host cell factor C1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000033761, Mouse)

Protein Percentage 93.82%
CDS Percentage 85.44%
Ka/Ks Ratio 0.05164 (Ka = 0.0364, Ks = 0.7054)

Hcfc1 ENSRNOG00000037264 (Rat)

Gene Details

host cell factor C1 (Hcfc1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000060327, Rat)

Protein Percentage 94.09%
CDS Percentage 85.21%
Ka/Ks Ratio 0.0482 (Ka = 0.0356, Ks = 0.7381)

Genome Location

Sequence Coding sequence

Length: 6027 bp    Location: 590247..571776   Strand: -
Raw sequence   
>XM_004874977.1
ATGGCCTCGGCCGTGCCGCCCGCCAGCTCGCCGGCCGTGCTCCTGCAGCCCCGCTGGAAGCGGGTGGTGGGCTGGTCGGGCCCCGTGCCCCGGCCCCGTCACGGCCACCGCGCCGTGGCCATCAAGGAGCTCATCGTGGTGTTCGGCGGAGGCAACGAGGGGATCGTGGACGAGCTGCACGTGTACAACACGGCGACCAACCAGTGGTTCATCCCGGCTGTGAGAGGGGACATCCCTCCCGGCTGCGCGGCCTATGGCTTTGTCTGCGACGGCACCCGCCTGCTGGTGTTCGGCGGGATGGTGGAGTACGGGAAGTACAGCAATGACCTCTACGAGCTCCAGGCAAGTCGTTGGGAGTGGAAGAGACTCAAAGCAAAGACACCCAAAAATGGGCCCCCTCCATGTCCTCGGCTCGGGCATAGCTTCTCCCTTGTGGGCAACAAATGCTACCTGTTTGGGGGTCTGGCCAATGATAGCGAGGACCCCAAGAACAACATTCCGAGATATCTGAATGACTTATACATCCTGGAACTACGGCCTGGCTCTGGAGTGGTGGCCTGGGACATCCCTATCACTTACGGGGTCCTGCCCCCACCCCGAGAGTCACATACTGCTGTGGTCTACACGGAGAGGGACAACAAGAAGTCCAAGCTGGTGATCTATGGAGGGATGAGTGGCTGCAGGCTGGGAGACCTCTGGACCCTTGACATTGAGACACTGACATGGAACAAGCCCAGTCTCAGTGGCGTGGCCCCGCTTCCTCGTAGTCTCCACTCTGCGACCACCATAGGAAACAAAATGTACGTGTTTGGTGGCTGGGTGCCCCTAGTCATGGACGATGTCAAAGTGGCCACGCATGAGAAGGAGTGGAAGTGTACCAACACCCTGGCTTGTCTCAACCTGGACACCATGGCCTGGGAGACCATCCTGATGGACACGCTGGAGGACAATATTCCGCGCGCTCGAGCCGGCCACTGTGCCGTTGCCATCAACACCCGCCTGTACATTTGGAGTGGGCGTGACGGCTACCGCAAGGCCTGGAACAACCAGGTCTGCTGCAAGGACCTCTGGTACCTGGAGACAGAAAAGCCTCCCTCCCCGGCCCGGGTCCAGCTGGTACGCGCCAATACCAACTCCCTGGAGGTGAGCTGGGGGGCGGTGGCAACAGCCGACAGTTACCTTCTGCAGCTCCAGAAATACGACATTCCTGCCACGGCTGCTACTGCCGCCTCCCCCACACCCAACCCGGTCCCATCTGTGCCTGCCAACCCTCCCAAGAGCCCTGCCCCTGCAGCAGCCGCACCTGCCGTGCAGCCGCTGACCCAAGTAGGCATCACGCTCCTGCCCCAGGCTGCCTCGGCGCCGCCCACCACCACAACCATCCAGGTCTTGCCTACAGTGCCGGGCAGCTCCATCGCCGTGCCCACTGCAGCCAGGACTCAGGGTGTCCCTGCTGTTCTCAAAGTGGCCGGTCCGCAGGCTACTGCAGGAACCCCACTGGTTACCATGCGACCTGCTAGCCAGGCTGGGAAAGCCCCCGTCACTGTGACTTCCCTGCCTGCGGGTGTGCGAATGGTTGTGCCCACACAGAGTGCTCAGGGGACGGTGATTGGCAGTAACCCACAGATGAGCGGGATGGCCGCGCTGGCAGCTGCTGCTGCTGCAACCCAGAAGATTCCTCCTTCCTCGGCACCTACCGTCCTGAGTGTCCCGGCAGGCACCACCATTGTGAAGACCGTGGCTGTGACGCCTGGCACCTCCACTCTCCCTGCCACCGTGAAGGTGGCCTCTTCGCCTGTCATGGTGAGCAACCCAGCTACTCGCATGCTGAAGACTGCGGCCGCCCAAGTGGGGACATCTGTCTCCTCTGCTGCCAACACGTCTACCCGCCCTATCATCACGGTGCACAAATCGGGGACCGTGACAGTGGCCCAGCAAGCTCAGGTGGTGACCACGGTGGTGGGTGGTGTCACTAAGACCATCACCCTGGTGAAGAGTCCCATCTCTGTCCCCGGAGGCAGCGCTCTGATTTCCAATCTGGGCAAAGTGATGTCCGTGGTCCAGACCAAGCCAGTTCAGACTTCGGCAGTCACAGGCCAGGCCTCTACCGGCCCAGTGACTCAGATCATCCAGACCAAAGGGCCCCTGCCAGCGGGGACAATCCTGAAGCTGGTAACCTCGGCAGATGGCAAGCCCACCACCATCATCACCACTACACAGGCCAGTGGGGCGGGAACCAAGCCTACCATCCTGGGCATCAGCAGTGTCTCCCCCAGCACCACCAAGCCTGGCACGACCACCATCATCAAGACCATCCCCATGTCAGCCATCATCACCCAGGCGGGGGCCACAGGTGTGACCAGCACTCCTGGCATTAAGTCCCCCATCACCATCATCACCACCAAGGTTATGACTTCGGGAACCGGAGCACCTGCCAAAATCATCACTGCTGTCCCCAAGATTGCCACTGGCCACGGGCAGCAGGGAGTGACTCAGGTGGTGCTAAAGGGGGCCCCTGGACAGCCAGGCACCATCCTCCGCACTGTGCCCATGGGAGGCGTTCGCCTGGTCACCCCTGTCACTGTCTCTGCTGTCAAGCCAGCTGTCACCACGTTGGTTGTGAAGGGCACCACAGGGGTCACCACGCTGGGCACAGTAACAGGCACTGTATCCACCAGCCTTGCTGGAGCCGGGGGCCACAGCACCAGCGCCTCCCTGGCCACACCCATCACCACCTTGGGCACCATTGCTACCCTCTCAAGCCAGGTGATCAATCCCACTGCCATCACTGTATCAGCTGCACAGACCACGCTGACGGCGGCTGGCGGGCTCACCACACCCACCATCACCATGCAGCCTGTCTCCCAGCCTACCCAGGTGACCCTGATCACAGCTCCCAGTGGGGTCGAGGCCCAGCCTGTGCATGACCTTCCCGTGTCCATTCTGGCCTCGCCTACCACGGAGCAGCCCACGGCCACAGTCACCATCGCCGACTCGGGCCAGGGCGATGTGCAGCCTGGCACCGTGACGCTGGTGTGCTCCAACCCGCCCTGCGAGACCCATGAGACGGGCACCACCAACACCGCCACCACCACTGTCGTGGCTAACCTTGGGGGACACACCCAGCCCACCCAAGTGCAGTTTGTCTGCGACAGGCAGGAGGCCGCTGCTTCTCTCGTGACCTCGACTGTGGGGCAGCAGAATGGCAGCGTGGTCCGTGTCTGCTCCAACCCGCCCTGTGAGACCCACGAGACGGGCACCACCAGCACCGCCACCACGGCCACCTCCAACATGGCTGGGCAGCATGGCTGCTCGAACCCGCCCTGTGAGACCCACGAGACCGGCACCACCAGCACCGCCACCACGGCCATGTCCAGCATCGGTGCTGGCCAGCAGCGTGATGCCCGCCGTGCCTCAGGCGCCCCCACTGTGGTCCGCATCAGTGTGGCTCCTGGGGTGCTGGAGGGGGCCCAGGGCTCCATCAAGCCCCAGTGCCAAACTCGCCAGACCAGCGCCACCAGCACCACCATGACTGTGATGGTCACTGGCACCCCGTGCGCCTCCGTGCAGTTGGCCCCGCTGAGTGGCAAGGACGTACCCTTGGGGCGCCAACTGGAGATGCTGCACCATGCCCACACAGCCGGCACCCAGAGTGGGGAGCCCAGCGCGGCTCGGGGGATGCCTGCGCCTGCGTATGAGGCCCTCCAGGCTGCCTCGCCCGGCGCCACCGTGACTGTGACTGCCCTGGAGGCGTTGCTGTGCCCCTCGGCCACCGTGACCCAGGTCTGCTCCAACCCGCCGTGCGAGACCCACGAGACGGGCACCACCCACACCGCCACTACCTCCAACGCAGGCAGCGCCCAGCGGGTGTGCTCCAACCCGCCGTGCGAGACCCATGAGACGGGCACCACCCACACGGCCACCACCGCCACCTCCCACGGGGCAGCGGGCCAGCCCGAGGGGGGGCAGCAGCCCCCTGCCGGCCGCCCCTGCGAGACGCACCAGACCACTTCCACAGGTACCACCATGTCTGTCAGTGTGGGCGCCCTGCTGCCTGACGCCGGCCCTGCCCACAGGACCCTGGAGCCTGGCGCGGTGCCCCCCACCCCTGGCCAGGCTGGGGCCGCGCTGCTGGCCCCCTTCCCGACGCAGAGGGTGTGCTCCAACCCACCCTGTGAGACTCACGAGACAGGCACCACGCATACGGCCACCACTGTCACCTCGAACATGAGCTCCAACCAAGACCCCCCACCAGCCGCTGGTGATCAGGGAGAGGTGGAGAGCACCCAGGGCGACAGCGTGAACATCACCAGCTCCAGCACCATCACGACGACTGTGTCCTCCACGCTGCCACGGGCGGTGACCACTGTGACCCAGTCCACGCCTGTCCCAGGCCCCTCAGTGCCGCCCCCTGAGGAACTGCAGGTCTCCCCTGGGCCCCGCCAGCAGCTGCCGCCACGACAGCTCCTGCAGTCCACCTCTGCGCCCCTCATGGGGGAGCCGGCTGAGGTCCTGGCCGCTGCCCCGCCCGCAGAGCTCCAGGCCGCTGTGGACCTGAGCAACACGGGGGACCCGTCTTCGGGCCAGGAGCCCACTGGCTCTGCCGTGGTGGCCACCGTGGTGGTGCAGCCCCCCCAGCCAACACAGTCTGAAGTAGAACAGTTGTCGCTTCCCCAGGAGCTCATGGCCGAGGCCCAGGCGGGCACCACCACCCTGATGGTCACAGGCCTCACACCCGAGGAGCTGGCTGTGACTGCCGCCGCCGAGGCAGCTGCCCAGGCTGCAGCCACCGAGGAAGCTCAGGCCCTGGCCATCCAGGCTGTGCTGCAGGCTGCACAGCAGGCCGTCATGGGTACCGGGGAGCCCATGGACACGTCCGAGGCGGCAGCGGCCGTGACCCAGGCAGAACTGGGTCACCTTTCTGCTGAGGGCCAGGAGGGCCAGGCCACCACCATCCCCATTGTGCTGACGCAGCAGGAGCTGGCAGCCCTGGTCCAGCAGCAGCAGCAGCTGCAGGAGGCGCAGGCCCAGGCCCAGCAGCAGCAGCACCACCTCCCTACCGAGGCACTGGCCCCAGCTGACAGCCTCAATGACCCGGCCATCGAGGGCAACTGCCTCAATGAACTGGCGGGCGCTGTGCCCAGCACCGTGGCCCTGCTGCCCCCCACAGCCACTGAGAGCCTGGCTCCATCCAACACATTCGTGGCTCCCCAGCCAGTTGTGGTCGCCAGCCCGGCCAAGCTGCAAGCTGCAGCTACCCTGACCGAAGTGGCCAATGGCATCGAGTCCCTGGGTGTGAAGCCAGACTTGCCGCCTCCACCCAGCAAGGCCCCTGTGAAGAAAGAGAACCAGTGGTTTGATGTGGGGGTCATTAAAGGCACCAATGTAATGGTGACACACTATTTCCTGCCACCAGATGACGCTGTCCCCTTGGATGACGATTTGGGCGCCGTCCCTGATTACAGCCAGCTGAAGAAGCAGGAGCTGCAGCCAGGCACAGCCTATAAGTTCCGAGTTGCCGGCATCAACGCCTGCGGCCGGGGGCCCTTCAGTGAGATCTCCGCTTTTAAGACATGTCTGCCGGGTTTCCCGGGGGCCCCTTGTGCCATTAAAATCAGCAAAAGTCCCGACGGTGCTCACCTCACATGGGAGCCGCCCTCCGTGACGTCGGGCAAGATCATCGAGTACTCTGTGTACCTGGCCATCCAGAGCTCGCAGGCAGGCGGCGAGGCCAAGAGCTCCGCGCCAGCGCAGCTGGCCTTCATGCGTGTGTACTGCGGGCCCAGCCCCTCGTGCCTCGTGCAGTCCTCCAGCCTCTCCAATGCCCACATTGACTACACCACCAAGCCCGCCATCATCTTTCGCATCGCCGCACGCAACGAGAAGGGCTACGGCCCTGCCACGCAAGTCAGGTGGCTGCAAGAGACCAGTAAAGACAGCTCGGGCAGCAAGCCAGCCAGCAAGCGGCCCATGTCCTCTCCGGAAATGAAATCTGCTCCAAAGAAGTCGAAGGCGGATGGTCAGTGA

Related Sequences

XP_004875034.1 Protein

Hcfc1 PREDICTED: host cell factor 1 isoform X3 [Heterocephalus glaber]

Length: 2008 aa      View alignments
>XP_004875034.1
MASAVPPASSPAVLLQPRWKRVVGWSGPVPRPRHGHRAVAIKELIVVFGGGNEGIVDELHVYNTATNQWFIPAVRGDIPPGCAAYGFVCDGTRLLVFGGMVEYGKYSNDLYELQASRWEWKRLKAKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVVYTERDNKKSKLVIYGGMSGCRLGDLWTLDIETLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTNTLACLNLDTMAWETILMDTLEDNIPRARAGHCAVAINTRLYIWSGRDGYRKAWNNQVCCKDLWYLETEKPPSPARVQLVRANTNSLEVSWGAVATADSYLLQLQKYDIPATAATAASPTPNPVPSVPANPPKSPAPAAAAPAVQPLTQVGITLLPQAASAPPTTTTIQVLPTVPGSSIAVPTAARTQGVPAVLKVAGPQATAGTPLVTMRPASQAGKAPVTVTSLPAGVRMVVPTQSAQGTVIGSNPQMSGMAALAAAAAATQKIPPSSAPTVLSVPAGTTIVKTVAVTPGTSTLPATVKVASSPVMVSNPATRMLKTAAAQVGTSVSSAANTSTRPIITVHKSGTVTVAQQAQVVTTVVGGVTKTITLVKSPISVPGGSALISNLGKVMSVVQTKPVQTSAVTGQASTGPVTQIIQTKGPLPAGTILKLVTSADGKPTTIITTTQASGAGTKPTILGISSVSPSTTKPGTTTIIKTIPMSAIITQAGATGVTSTPGIKSPITIITTKVMTSGTGAPAKIITAVPKIATGHGQQGVTQVVLKGAPGQPGTILRTVPMGGVRLVTPVTVSAVKPAVTTLVVKGTTGVTTLGTVTGTVSTSLAGAGGHSTSASLATPITTLGTIATLSSQVINPTAITVSAAQTTLTAAGGLTTPTITMQPVSQPTQVTLITAPSGVEAQPVHDLPVSILASPTTEQPTATVTIADSGQGDVQPGTVTLVCSNPPCETHETGTTNTATTTVVANLGGHTQPTQVQFVCDRQEAAASLVTSTVGQQNGSVVRVCSNPPCETHETGTTSTATTATSNMAGQHGCSNPPCETHETGTTSTATTAMSSIGAGQQRDARRASGAPTVVRISVAPGVLEGAQGSIKPQCQTRQTSATSTTMTVMVTGTPCASVQLAPLSGKDVPLGRQLEMLHHAHTAGTQSGEPSAARGMPAPAYEALQAASPGATVTVTALEALLCPSATVTQVCSNPPCETHETGTTHTATTSNAGSAQRVCSNPPCETHETGTTHTATTATSHGAAGQPEGGQQPPAGRPCETHQTTSTGTTMSVSVGALLPDAGPAHRTLEPGAVPPTPGQAGAALLAPFPTQRVCSNPPCETHETGTTHTATTVTSNMSSNQDPPPAAGDQGEVESTQGDSVNITSSSTITTTVSSTLPRAVTTVTQSTPVPGPSVPPPEELQVSPGPRQQLPPRQLLQSTSAPLMGEPAEVLAAAPPAELQAAVDLSNTGDPSSGQEPTGSAVVATVVVQPPQPTQSEVEQLSLPQELMAEAQAGTTTLMVTGLTPEELAVTAAAEAAAQAAATEEAQALAIQAVLQAAQQAVMGTGEPMDTSEAAAAVTQAELGHLSAEGQEGQATTIPIVLTQQELAALVQQQQQLQEAQAQAQQQQHHLPTEALAPADSLNDPAIEGNCLNELAGAVPSTVALLPPTATESLAPSNTFVAPQPVVVASPAKLQAAATLTEVANGIESLGVKPDLPPPPSKAPVKKENQWFDVGVIKGTNVMVTHYFLPPDDAVPLDDDLGAVPDYSQLKKQELQPGTAYKFRVAGINACGRGPFSEISAFKTCLPGFPGAPCAIKISKSPDGAHLTWEPPSVTSGKIIEYSVYLAIQSSQAGGEAKSSAPAQLAFMRVYCGPSPSCLVQSSSLSNAHIDYTTKPAIIFRIAARNEKGYGPATQVRWLQETSKDSSGSKPASKRPMSSPEMKSAPKKSKADGQ