Sequence details NCBI ID: XM_004874873.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol unclassified transcription discrepancy
Gene Name mRNA
Entrez Gene ID 101696777

Database interlinks

Part of NW_004624945.1 (Scaffold)

For more information consult the page for NW_004624945.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SCARF2 ENSCPOG00000027465 (Guinea pig)

Gene Details

scavenger receptor class F, member 2

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000019055, Guinea pig)

Protein Percentage 89.28%
CDS Percentage 89.44%
Ka/Ks Ratio 0.15302 (Ka = 0.0581, Ks = 0.3794)

SCARF2 ENSG00000244486 (Human)

Gene Details

scavenger receptor class F, member 2

External Links

Gene Match (Ensembl Protein ID: ENSP00000266214, Human)

Protein Percentage 89.63%
CDS Percentage 87.12%
Ka/Ks Ratio 0.06544 (Ka = 0.0505, Ks = 0.7719)

Scarf2 ENSMUSG00000012017 (Mouse)

Gene Details

scavenger receptor class F, member 2

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000012161, Mouse)

Protein Percentage 84.9%
CDS Percentage 82.18%
Ka/Ks Ratio 0.08171 (Ka = 0.0837, Ks = 1.0242)

Scarf2 ENSRNOG00000000288 (Rat)

Gene Details

scavenger receptor class F, member 2 (Scarf2), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000000313, Rat)

Protein Percentage 84.9%
CDS Percentage 82.38%
Ka/Ks Ratio 0.08018 (Ka = 0.0798, Ks = 0.9958)

Genome Location

Sequence Coding sequence

Length: 2553 bp    Location: 404958..392615   Strand: -
Raw sequence   
>XM_004874873.1
ATGGAGGGCGCAGGGCCCCGGGGGGCCGGGCCGGCGCGGCGCCGGGGATCCGGGGATCCGCCGCTGCCGTTCTGGCTACTCCTGCTGCTCTGGCTGCTGCCCGGCCCCGCGACGCTCCAGGAGCTGAACCCGCGCGGCCGAAACGTGTGCCGCGCGCCCGGCTCCCAAGTGCCCACATGCTGCATTGGCTGGAGACAGCAGGGGGACGAGTGTGTGATCGCTGTGTGCGAAGGCAACTCCACGTGCTCAGAGAACGAGGTGTGCGTGCGGCCCGGAGAGTGCCGCTGCCGCCACGGCTACTTCGGTGCCAACTGCGACACTAAGTGCCCGCGCCAGTTCTGGGGCCCCGACTGCAAAGAGCGGTGTAGCTGCCATCCCCACGGGCAGTGTGAGGACGTGACGGGCCAGTGTACGTGCCACTCACAGCGCTGGGGCGAGCGCTGCGAGCATGCGTGCCAGTGCCAGCATGGCACGTGCCACCCGCGGAGCGGCGCGTGTCGCTGCGAGCCTGGGTGGTGGGGCGCACAGTGTGCTAGAGCATGCTACTGCAGCGCCACGTCGCGCTGCGACCCGCAAACGGGCGCCTGCCTGTGCCAGGCAGGGTGGTGGGGCCGCAGTTGCAACAATCAGTGCGCCTGCAACTCGTCGCCCTGCGAGCAGCAGAGCGGCCGCTGCCAGTGCCGAGAGGGCATGTTTGGCGCGCGCTGCGATCGTTACTGCCACTGCTTCCGCGGCCGCTGCCACCCGGTGGATGGGACGTGCGCCTGCGAGCCGGGCTACCGCGGCAAGTACTGTCGCGAGCCTTGTCCTGCCGGCTTCTATGGCCTGGGCTGTCGCCGCCGGTGCGGCCAGTGCAAGGGCCAGCAGCCGTGCACTGTAGCCGAGGGCCGCTGCCTGACATGCGAGCCCGGCTGGAATGGAACCAAGTGCGACCAGCCATGTGCCACGGGCTTCTACGGCGATGGCTGCGGCTACCGCTGCCCGCCCTGCCGCGACGGGCACGCCTGCAACCATGTCACCGGAAAGTGTACTCGCTGCAACGCAGGCTGGATCGGCGACCGGTGTGAAACCAAGTGCAGCAATGGCACTTACGGCGAGGACTGCGCCTTTGTGTGCGCTGACTGCGGCAGCGGCCACTGTGACTTCCAGTCGGGGCGCTGCCTGTGCAGCCCCGGTGTCCACGGACCCCACTGTAACATGACGTGTCCGCCCGGGCACCACGGCGTGGACTGCGCCCAGGCCTGCAGCTGCCACGAGGACTCCTGCGACCCGGTCACCGGTGCCTGCCACCTGGAAACCAACCAGCGCAAGGGCGTGATGGGCGCGGGCGCTCTGCTCGCCCTGCTCCTCGGCCTGCTCCTCTCGCTACTCGGCTGCTGCTGCGCCTGCCGCGGCAAGGATCCCGCCCGCCGGGAGCTCTCGCTGGGAAGGAAGAAGGCTCCACAACGCCTGTGTGGGCGCTTCAGCCGCATCAGCATGAAGCTGCCTCGGATCCCTCTGCGAAGGCAGAAGTTACCCAAAGTCGTAGTGGCCCATCACGACCTGGACAACACACTCAACTGCAGCTTCCTGGAACCACCCTCAGGGCTGGAGCAGCCTTCACCATCTTGGTCCTCCCGGGCCTCTTTCTCCTCCTTTGATACTACAGATGAAGGCCCTGTGTACTGCGTTCCCCATGAGGAGGCGGCAGCCGAAAGCCGGGACTCAGAGGCTCCCACTGCTGCAGAGGTGCCCTTGACTACCCCGGTGTCCGCGGAGGAGGCATCTCCACTCCCTGCGTCCTCTGACAGCGAGCGGTCGGCGTCCAGCGTGGAGGGACCCGGCGGAGTGTTGTACGCACGCGTTGCCCGGCGAGAGGCCCGGCTGGCCCGGGCCCGGGGCGAGGCTGGAGGTTTGTCGTTGTCGCCATCGCCTGAACGCAGGAAGCCGCCGCCACCTGACCCCGCTACCAAGCCCAAGGTGTCTTGGATCCACGGCAAGCATGGCGCCGCTACCTCACCATCGCCTCCGGTCCCTGAGTCTGCACCCAGCCCCAGCAAGAGGAAACGGACACCTAGCGACACGTCGGCGCGACCAGAGGAGCCCGGTAGCCCCCGGGCCCGCGACACGACGCCGCGGGCCCCCGGGCTGGCTGAGGAGGTACCAGCCCTCGTCGCGCCCTCACCGCCCCGGGCCCCAGCGCGANGGCCGCGGCCCTGGTCTCTCGGAGCCCACGGACGCCGGTGGTCCTCCGCGCAGCGCGCCGAGGCCGCCTCCATGTTGGCGGCGGAGCTGCGCGACAAGACTCGCAGCCTGGGCCGGGGCGAGGCAGCCTCCGGCACACAAGGTCCTCGGGAGAAGCCGGCGCCACCGCAGAAGGCCAAGCGCTCCATGCCACCAGCCTCACCGCCCCGCGTGTCCCCAGCGCCTGAAGCCATAGGGCCCGAGAAGGCAGTGACTAACATGCCTGCGCCCGAGACTCCTCGGAAGAAGACCCCTATCCAGAAGCCGCCACGCAAGAAGAGCCGGGAGGCGGCAGGCGAGCAGGGAAGGGTGGGAGCGCCCACCCTGTAG

Related Sequences

XP_004874930.1 Protein

unclassified transcription discrepancy PREDICTED: LOW QUALITY PROTEIN: scavenger receptor class F member 2 [Heterocephalus glaber]

Length: 850 aa      View alignments
>XP_004874930.1
MEGAGPRGAGPARRRGSGDPPLPFWLLLLLWLLPGPATLQELNPRGRNVCRAPGSQVPTCCIGWRQQGDECVIAVCEGNSTCSENEVCVRPGECRCRHGYFGANCDTKCPRQFWGPDCKERCSCHPHGQCEDVTGQCTCHSQRWGERCEHACQCQHGTCHPRSGACRCEPGWWGAQCARACYCSATSRCDPQTGACLCQAGWWGRSCNNQCACNSSPCEQQSGRCQCREGMFGARCDRYCHCFRGRCHPVDGTCACEPGYRGKYCREPCPAGFYGLGCRRRCGQCKGQQPCTVAEGRCLTCEPGWNGTKCDQPCATGFYGDGCGYRCPPCRDGHACNHVTGKCTRCNAGWIGDRCETKCSNGTYGEDCAFVCADCGSGHCDFQSGRCLCSPGVHGPHCNMTCPPGHHGVDCAQACSCHEDSCDPVTGACHLETNQRKGVMGAGALLALLLGLLLSLLGCCCACRGKDPARRELSLGRKKAPQRLCGRFSRISMKLPRIPLRRQKLPKVVVAHHDLDNTLNCSFLEPPSGLEQPSPSWSSRASFSSFDTTDEGPVYCVPHEEAAAESRDSEAPTAAEVPLTTPVSAEEASPLPASSDSERSASSVEGPGGVLYARVARREARLARARGEAGGLSLSPSPERRKPPPPDPATKPKVSWIHGKHGAATSPSPPVPESAPSPSKRKRTPSDTSARPEEPGSPRARDTTPRAPGLAEEVPALVAPSPPRAPARXPRPWSLGAHGRRWSSAQRAEAASMLAAELRDKTRSLGRGEAASGTQGPREKPAPPQKAKRSMPPASPPRVSPAPEAIGPEKAVTNMPAPETPRKKTPIQKPPRKKSREAAGEQGRVGAPTL