Details from NCBI annotation

Gene Symbol Slc6a1
Gene Name solute carrier family 6 (neurotransmitter transporter, GABA), member 1, transcript variant X3
Entrez Gene ID 101716075

Database interlinks

Part of NW_004624943.1 (Scaffold)

For more information consult the page for NW_004624943.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SLC6A1 ENSCPOG00000025521 (Guinea pig)

Gene Details

solute carrier family 6 (neurotransmitter transporter), member 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000017092, Guinea pig)

Protein Percentage 96.14%
CDS Percentage 91.16%
Ka/Ks Ratio 0.05133 (Ka = 0.0286, Ks = 0.5564)

SLC6A1 ENSG00000157103 (Human)

Gene Details

solute carrier family 6 (neurotransmitter transporter), member 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000287766, Human)

Protein Percentage 98.0%
CDS Percentage 91.76%
Ka/Ks Ratio 0.01356 (Ka = 0.0091, Ks = 0.6712)

Slc6a1 ENSMUSG00000030310 (Mouse)

Gene Details

solute carrier family 6 (neurotransmitter transporter, GABA), member 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000032454, Mouse)

Protein Percentage 97.66%
CDS Percentage 89.82%
Ka/Ks Ratio 0.01191 (Ka = 0.0105, Ks = 0.8844)

Slc6a1 ENSRNOG00000006527 (Rat)

Gene Details

solute carrier family 6 (neurotransmitter transporter), member 1 (Slc6a1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000009705, Rat)

Protein Percentage 97.66%
CDS Percentage 89.04%
Ka/Ks Ratio 0.01082 (Ka = 0.0107, Ks = 0.992)

Genome Location

Sequence Coding sequence

Length: 1800 bp    Location: 647268..631781   Strand: -
>XM_004874849.1
ATGGCGACCAATGGCAGCAAGGTGGCCGACGGGCAGATCTCCACAGAAGTCAGTGAGGCCCCCTTGGCCAACGACAAGCCCAAAACCCTGGTGGTCAAGGTGCAGAAGAAGGCCGGGGACCTTCCCGATCGAGATACATGGAAGGGCCGCTTCGACTTCCTCATGTCCTGTGTGGGCTACGCCATTGGCCTGGGCAATGTCTGGAGGTTCCCCTACCTCTGTGGGAAGAATGGCGGGGGGGCCTTCCTGATCCCCTACTTCCTGACACTCATCTTTGCGGGGGTTCCGCTCTTCCTGCTGGAGTGCTCCCTGGGCCAGTACACGTCCATCGGGGGCTTGGGTGTGTGGAAGCTGGCCCCCATGTTCAAGGGTGTGGGTCTGGCCGCAGCGGTGCTGTCCTTTTGGCTGAATATCTACTACATCGTCATCATCTCCTGGGCCATCTACTACCTGTACAACTCCTTCACCACGACACTACCATGGAAACAGTGCGACAATTCCTGGAACACAGAGCACTGCTTCTCCAACTACAGCATCGTCAACACCACCAACATGACCAGCGCCGTGGTGGAGTTCTGGGAGCGCAACATGCATCAGATGACAGATGGGCTGGACAAGCCGGGTCAGATCCGCTGGCCGCTGGCCATCACCCTAGCCATTGCGTGGATCCTGGTGTACTTCTGCATCTGGAAGGGTGTGGGCTGGACTGGGAAGGTGGTCTACTTCTCCGCCACCTATCCCTACATCATGCTCATCATCCTGTTCTTCCGCGGAGTGACGCTGCCCGGGGCCAAGGAGGGCATCCTCTTCTACATCACGCCCAACTTCCGCAAGCTGTCTGACTCCGAGGTGTGGCTGGATGCGGCTACCCAGATCTTCTTCTCCTACGGGCTGGGCCTGGGGTCCCTGATCGCTCTCGGGAGCTACAACTCTTTCCATAACAACGTCTACAGGGACTCCATCATCGTCTGCTGCATCAACTCTTGCACCAGCATGTTCGCAGGCTTCGTCATCTTCTCCATTGTGGGCTTCATGGCTCATGTCACCAAGAGGTCCATTGCCGACGTGGCAGCCTCAGGCCCCGGGCTGGCATTCCTGGCATACCCAGAGGCCGTGACGCAGTTGCCCATCTCCCCGCTCTGGGCCATCCTCTTCTTCTCCATGCTCCTGATGCTGGGCATCGACAGCCAGTTCTGCACTGTGGAAGGCTTCATCACTGCGCTCGTGGATGAGTACCCCAGGCTCCTCCGCAACCGCAGGGAACTCTTCATCGCCGCCGTCTGCATTGTGTCCTACCTGATTGGCCTCTCCAACATCACGCAGGGGGGCATTTATGTCTTCAAACTCTTTGACTACTACTCTGCCAGCGGCATGAGCCTGCTGTTCCTCGTGTTCTTTGAGTGTGTCTCCATTTCCTGGTTTTACGGTGTCAACCGATTCTATGACAACATCCAAGAGATGGTTGGCTCCAGGCCCTGCATCTGGTGGAAGCTCTGCTGGTCCTTCTTCACCCCAATCATTGTGGCGGGTGTGTTCATTTTCAGTGCTGTGCAGATGACGCCCCTCACCATGGGCAGCTACGTCTTCCCCAAGTGGGGCCAGGGTGTAGGCTGGCTCATGGCTCTGTCCTCCATGGTCCTCATCCCTGGGTACATGGCCTACATGTTCCTTACCCTGAAGGGCTCCCTGAAGCAGCGCATCCAGGTCATGACCCAGCCCAGCGAGGACATTGTCCGCCCAGAGAATGGCCCAGAGCAGCCCCAGGCCAGCGGCTCAGCCAGCAAGGAGGCCTACATCTAG

Related Sequences

XP_004874906.1 Protein

Slc6a1 PREDICTED: sodium- and chloride-dependent GABA transporter 1 isoform X3 [Heterocephalus glaber]

Length: 599 aa      View alignments
>XP_004874906.1
MATNGSKVADGQISTEVSEAPLANDKPKTLVVKVQKKAGDLPDRDTWKGRFDFLMSCVGYAIGLGNVWRFPYLCGKNGGGAFLIPYFLTLIFAGVPLFLLECSLGQYTSIGGLGVWKLAPMFKGVGLAAAVLSFWLNIYYIVIISWAIYYLYNSFTTTLPWKQCDNSWNTEHCFSNYSIVNTTNMTSAVVEFWERNMHQMTDGLDKPGQIRWPLAITLAIAWILVYFCIWKGVGWTGKVVYFSATYPYIMLIILFFRGVTLPGAKEGILFYITPNFRKLSDSEVWLDAATQIFFSYGLGLGSLIALGSYNSFHNNVYRDSIIVCCINSCTSMFAGFVIFSIVGFMAHVTKRSIADVAASGPGLAFLAYPEAVTQLPISPLWAILFFSMLLMLGIDSQFCTVEGFITALVDEYPRLLRNRRELFIAAVCIVSYLIGLSNITQGGIYVFKLFDYYSASGMSLLFLVFFECVSISWFYGVNRFYDNIQEMVGSRPCIWWKLCWSFFTPIIVAGVFIFSAVQMTPLTMGSYVFPKWGQGVGWLMALSSMVLIPGYMAYMFLTLKGSLKQRIQVMTQPSEDIVRPENGPEQPQASGSASKEAYI