Sequence details NCBI ID: XM_004874004.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Cntn1
Gene Name contactin 1, transcript variant X2
Entrez Gene ID 101718711

Database interlinks

Part of NW_004624917.1 (Scaffold)

For more information consult the page for NW_004624917.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CNTN1 ENSCPOG00000008811 (Guinea pig)

Gene Details

contactin 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000007909, Guinea pig)

Protein Percentage 96.55%
CDS Percentage 91.79%
Ka/Ks Ratio 0.06504 (Ka = 0.0216, Ks = 0.3315)

CNTN1 ENSG00000018236 (Human)

Gene Details

contactin 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000447006, Human)

Protein Percentage 95.77%
CDS Percentage 90.49%
Ka/Ks Ratio 0.04777 (Ka = 0.0204, Ks = 0.4264)

Cntn1 ENSMUSG00000055022 (Mouse)

Gene Details

contactin 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000133063, Mouse)

Protein Percentage 94.39%
CDS Percentage 85.07%
Ka/Ks Ratio 0.03384 (Ka = 0.0285, Ks = 0.8408)

Cntn1 ENSRNOG00000004438 (Rat)

Gene Details

contactin 1 (Cntn1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000006219, Rat)

Protein Percentage 94.39%
CDS Percentage 84.74%
Ka/Ks Ratio 0.03546 (Ka = 0.0297, Ks = 0.8388)

Genome Location

Sequence Coding sequence

Length: 3051 bp    Location: 292387..750247   Strand: +
Raw sequence   
>XM_004874004.1
ATGTGGTTTCTGGTTAGTCATCTCATGATAGCATCGTTCACAAGCTGTCTAGCAGAGTTTACCTGGCACAGAAGATATGGACATGGAGTTTCTGAAGAAGACAAAGGATTTGGACCAATTTTTGAAGAGCAACCAATCAATACCATTTATCCAGAAGAATCACTAGAAGGGAAAGTTTCGCTGAACTGCAGGGCACGAGCCAGCCCTTTCCCCGTTTACAAATGGAGAATGAATAATGGGGATGTTGATTTAACAAGTGATCGTTATAGTATGGTCGGAGGAAATCTTGTTATCAACAACCCTGACAAACAGAAAGATGCTGGAATATACTACTGTTTGGCATCGAATAACTATGGGATGGTCAGAAGTACTGAAGCAACACTGAACTTTGGATATCTGGATCCTTTTCCACCTGAAGAACGTCCTGAAGTCAGAGTGAAAGAAGGGAAAGGGATGGTGCTGCTCTGTGACCCTCCTTACCATTTTCCAGATGATCTCAGCTACCGCTGGCTTCTAAATGAGTTTCCAGTGTTTATCACAATGGATAAACGAAGATTTGTGTCTCAGACGAATGGAAATCTCTACATTGCAAATGTTGAGGCTTCTGACAAAGGCAATTATTCCTGCTTTGTATCGAGTCCTTCTATTACAAAGAGTGTATTCAGCAAATTCATCCCACTCATTCCAATACCTGAAAGAACAACAAAACCATACCCTGCTGATATTGTAGTTCAATTCAAGGACATCTATGCATTGATGGGCCAAAATGTGACTCTAGAGTGTTTTGCACTTGGAAATCCTGTTCCTGATATCCGATGGCGGAAAGTCCTAGAACCAATGCCAAGCACCGCTGAGATCAGTACCTCTGGGGCTGTCCTGAAGATCTTCAATATTCAGCTAGAAGATGAAGGCCTGTATGAATGTGAGGCTGAGAACATCAGAGGAAAGGATAAACACCAGGCAAGAATTTATGTTCAAGCATTTCCAGAGTGGGTAGAACATATCAATGACACAGAGGTAGACATAGGCAGTGACCTCTACTGGCCTTGTGTGGCTACAGGGAAGCCCATCCCTACGATTCGATGGCTGAAAAATGGATATGCGTATCACAAAGGGGAACTGAGACTATATGATGTGACCTTTGAAAATGCCGGAATGTATCAGTGCATAGCAGAGAACACATATGGGGCCATTTACGCAAACGCTGAGCTGAAGATCTTGGCTTTGGCTCCAACTTTTGAACTGAATCCTATGAAGAAAAAGATCCTGGCTGCTAAAGGAGGCCGGGTGATAATAGAGTGTAAACCTAAAGCTGCACCTAAACCAAAGTTTTCATGGAGTAAAGGAACAGAGTGGCTTGTGAACAGTAGCAGAATCCTCATTTGGGAAGATGGAAGCTTGGAAATCAACAACATAACAAGGAATGATGGAGGCATTTATACATGCTTTGCAGAAAATAATAGAGGGAAGGCTAATAGCACTGGTACACTTGTTATCACAGATCCCACGCGGATAATCTTGGCCCCGATCAATGCCGATATCACTGTTGGAGAAAATGCCACCATGCAGTGTGCTGCGTCCTTTGATCCCGCCTTGGATCTCACATTTATTTGGTCTTTCAATGGCTATGTGATTGACTTCACCAAAGAGAATATTCACTACCAGAGGAATTTTATGTTGGATGCCAATGGGGAACTACTCATCCGGAACGCGCAGCTGAGACACGCAGGGAGATACACATGCACCGCTCAGACCATTGTGGACAATTCTTCTGCTTCTGCTGACCTTGTTGTGCGAGGCCCCCCAGGCCCTCCGGGTGGTCTGAGAATAGAAGATATTAGAGCCACTTCTGTGGCCCTCACTTGGAGTCGAGGGTCTGACAATCATAGTCCTATCTCTAAATACACCATCCAGACCAAGACTATTCTTTCAGATGACTGGAAAGATGCAAAAACAGATCCCCCAATCATTGAAGGAAATATGGAGGCAGCAAGAGCAGTGGATTTAATCCCATGGATGGAATATGAATTTCGTGTGTTAGCCACTAACACCTTGGGTATGGGCGAGCCCAGTATACCATCAAACAGAATAAAAACAGATGGTGCCGCACCAAATGTGGCTCCTTCAGATGTAGGAGGCGGGGGTGGAAGCAACAGAGAGCTGACGATAACATGGGCGCCTTTGTCCAGAGAATACCACTATGGCAACAACTTTGGTTATATAGTGGCATTTAAGCCATTTGATGGAGACGAATGGAAAAAAGTTACAGTTACTAATCCAGACACTGGCCGATATGTCCATAAAGATGAAACCATGAGCCCTTCCACGGCATTTCAAGTCAAAGTTAAAGCCTTCAACAACAAAGGCGATGGACCGTACAGCCTTATAGCTGTCATTTATTCAGCACAAGATGCCCCCAATGAAGCTCCCACTGATGTGGGCGTCAAAGTCTTATCATCTTCCGAGATTTCAGTTCATTGGAAGCATGTTGTAGAAAAAATAGTGGAAAGCTATCAGATTAGGTACTGGGCTGCCCATGACAAGGAAGCAGCTGCACACAGAGTTCAAGTCACCAGCCAGGAGTACTCGGCCAGACTGGAAAACCTTCTGCCTGACACCCAGTATTTTGTGGAAGTGGGGGCCTGCAACAGTGCAGGGTGTGGACCTCCAAGTGAGGTGATCGAGACCTTCACTAGGAAAGCACCTCCTAGCCAGCCCCCAAGGATTATCAGCTCAGTGCGGTCTGGTTCCCGTTACATAATCAGCTGGGATCATGTTGTTGCACTATCAAATGAATCATCAGTCACAGGATATAAGGTACTCTATAGACCTGATGGCCAGCATGAGGGCAAGCTGTATTCAACTCACAAACACTCCATAGAGGTCCCAATCCCCAGGGATGGACAGTATGTGGTGGAGGTCCGAGCGCACAGTGATGGGGGTGATGGAGTGGTGTCTCAAGTCAAAATTTCAGGTGCGTCCACCTTGTCTTCAAGTCTTTCTGGCTTACTGCTCCCTGCCCTCGCCGTCCTTCTGCACTTGGAATTCTGA

Related Sequences

XP_004874061.1 Protein

Cntn1 PREDICTED: contactin-1-like isoform X2 [Heterocephalus glaber]

Length: 1016 aa      View alignments
>XP_004874061.1
MWFLVSHLMIASFTSCLAEFTWHRRYGHGVSEEDKGFGPIFEEQPINTIYPEESLEGKVSLNCRARASPFPVYKWRMNNGDVDLTSDRYSMVGGNLVINNPDKQKDAGIYYCLASNNYGMVRSTEATLNFGYLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDIYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGLYECEAENIRGKDKHQARIYVQAFPEWVEHINDTEVDIGSDLYWPCVATGKPIPTIRWLKNGYAYHKGELRLYDVTFENAGMYQCIAENTYGAIYANAELKILALAPTFELNPMKKKILAAKGGRVIIECKPKAAPKPKFSWSKGTEWLVNSSRILIWEDGSLEINNITRNDGGIYTCFAENNRGKANSTGTLVITDPTRIILAPINADITVGENATMQCAASFDPALDLTFIWSFNGYVIDFTKENIHYQRNFMLDANGELLIRNAQLRHAGRYTCTAQTIVDNSSASADLVVRGPPGPPGGLRIEDIRATSVALTWSRGSDNHSPISKYTIQTKTILSDDWKDAKTDPPIIEGNMEAARAVDLIPWMEYEFRVLATNTLGMGEPSIPSNRIKTDGAAPNVAPSDVGGGGGSNRELTITWAPLSREYHYGNNFGYIVAFKPFDGDEWKKVTVTNPDTGRYVHKDETMSPSTAFQVKVKAFNNKGDGPYSLIAVIYSAQDAPNEAPTDVGVKVLSSSEISVHWKHVVEKIVESYQIRYWAAHDKEAAAHRVQVTSQEYSARLENLLPDTQYFVEVGACNSAGCGPPSEVIETFTRKAPPSQPPRIISSVRSGSRYIISWDHVVALSNESSVTGYKVLYRPDGQHEGKLYSTHKHSIEVPIPRDGQYVVEVRAHSDGGDGVVSQVKISGASTLSSSLSGLLLPALAVLLHLEF