Sequence details NCBI ID: XM_004873992.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Gtf3c6
Gene Name general transcription factor IIIC, polypeptide 6, alpha 35kDa, transcript variant X2
Entrez Gene ID 101710597

Database interlinks

Part of NW_004624916.1 (Scaffold)

For more information consult the page for NW_004624916.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

GTF3C6 ENSCPOG00000006228 (Guinea pig)

Gene Details

general transcription factor IIIC, polypeptide 6, alpha 35kDa

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000005617, Guinea pig)

Protein Percentage 82.71%
CDS Percentage 87.54%
Ka/Ks Ratio 0.29514 (Ka = 0.092, Ks = 0.3117)

GTF3C6 ENSG00000155115 (Human)

Gene Details

general transcription factor IIIC, polypeptide 6, alpha 35kDa

External Links

Gene Match (Ensembl Protein ID: ENSP00000357863, Human)

Protein Percentage 79.05%
CDS Percentage 83.97%
Ka/Ks Ratio 0.26532 (Ka = 0.1255, Ks = 0.4731)

Gtf3c6 ENSMUSG00000019837 (Mouse)

Gene Details

general transcription factor IIIC, polypeptide 6, alpha

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000019982, Mouse)

Protein Percentage 71.56%
CDS Percentage 77.52%
Ka/Ks Ratio 0.20755 (Ka = 0.1871, Ks = 0.9015)

Gtf3c6 ENSRNOG00000000586 (Rat)

Gene Details

general transcription factor IIIC, polypeptide 6, alpha (Gtf3c6), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000000716, Rat)

Protein Percentage 71.36%
CDS Percentage 77.88%
Ka/Ks Ratio 0.25102 (Ka = 0.1943, Ks = 0.774)

Genome Location

Sequence Coding sequence

Length: 666 bp    Location: 1916527..1925327   Strand: +
Raw sequence   
>XM_004873992.1
ATGTCGGCGACAGAAGAACCTAGGCAGGAGGATCCAGCGAAGGAGGAGAAGGAGGAAGAAGAGGAGGAGGAGCAGTTTGTTCTGGTGGAATTGTCGGGAATTATTGATTCAGACTTTCTCTCAAAATGTGAAAATAAATGCAAGATTTTGGGGATCGACACTGAGAGGCCCATTCTGCAGTTGGATAGCTATGTGTTTGCCGGGGAGTATGAAGATACTCTTGGAACCTGTGTTATATTTGAAGAAAGTGTTGAACATGTGGATCCAGAAGGCAATAATAAAACAGTGCTGAAATATAAATGCCACACAATGAAGAAACTCAGCATGACCAGAACTCTCTTGACAGAAAAGAAGGAAGGAGAAGAAAGCATAGGAGGAGTAGAATGGCTACAGATGAAGGATAATGATTTCTCCTATAGACCCAACATGATTTGTAGCTTTGTACATGAAAATGAAGAGGAAGTTGTAGCTCCAGCCTCAGAAAAACGTTTAAAGGTGGAAGAGCAAGAGACTAAAGTGAAAGATGGTTCAAACCTCAACTGTGAACAGGAGAAACCATCAGAAACAGAGGGTTCTGGTCCTCCTATTGACATCCCTTCTTCTGAGATGGAAGGTTCTGTTCTTATGGAAACTCGATTCGCTGCCTTAAAAATCACCCCTAGATAA

Related Sequences

XP_004874049.1 Protein

Gtf3c6 PREDICTED: general transcription factor 3C polypeptide 6 isoform X2 [Heterocephalus glaber]

Length: 221 aa      View alignments
>XP_004874049.1
MSATEEPRQEDPAKEEKEEEEEEEQFVLVELSGIIDSDFLSKCENKCKILGIDTERPILQLDSYVFAGEYEDTLGTCVIFEESVEHVDPEGNNKTVLKYKCHTMKKLSMTRTLLTEKKEGEESIGGVEWLQMKDNDFSYRPNMICSFVHENEEEVVAPASEKRLKVEEQETKVKDGSNLNCEQEKPSETEGSGPPIDIPSSEMEGSVLMETRFAALKITPR