Sequence details NCBI ID: XM_004873918.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Vcp
Gene Name valosin containing protein
Entrez Gene ID 101712176

This gene is present in the GenAge database and has been identified as potentially important to ageing in humans.

Database interlinks

Part of NW_004624915.1 (Scaffold)

For more information consult the page for NW_004624915.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

VCP ENSCPOG00000011991 (Guinea pig)

Gene Details

valosin containing protein

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000010789, Guinea pig)

Protein Percentage 99.26%
CDS Percentage 94.21%
Ka/Ks Ratio 0.02667 (Ka = 0.0059, Ks = 0.2229)

VCP ENSG00000165280 (Human)

Gene Details

valosin containing protein

External Links

Gene Match (Ensembl Protein ID: ENSP00000351777, Human)

Protein Percentage 100.0%
CDS Percentage 93.88%
Ka/Ks Ratio 0.001 (Ka = 0.0003, Ks = 0.2704)

Vcp ENSMUSG00000028452 (Mouse)

Gene Details

valosin containing protein

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000030164, Mouse)

Protein Percentage 100.0%
CDS Percentage 91.65%
Ka/Ks Ratio 0.001 (Ka = 0.0004, Ks = 0.3967)

Vcp ENSRNOG00000034242 (Rat)

Gene Details

valosin-containing protein (Vcp), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000040121, Rat)

Protein Percentage 99.88%
CDS Percentage 92.02%
Ka/Ks Ratio 0.00156 (Ka = 0.0006, Ks = 0.373)

Genome Location

Sequence Coding sequence

Length: 2421 bp    Location: 270498..253240   Strand: -
Raw sequence   
>XM_004873918.1
ATGGCCTCTGGAGCCGATTCAAAAGGTGATGACTTATCAACAGCCATTCTCAAGCAGAAGAACCGTCCTAATCGGTTAATTGTTGATGAAGCCATCAATGAGGACAACAGTGTGGTGTCCTTGTCCCAGCCCAAGATGGATGAGCTGCAGTTATTCCGAGGTGACACAGTGTTGCTGAAAGGAAAGAAGAGGCGGGAAGCTGTGTGCATTGTGCTTTCTGATGACACATGTTCTGATGAGAAGATTCGAATGAATAGAGTTGTTCGGAATAACCTTCGAGTGCGCCTAGGGGATGTCATCAGCATCCAGCCATGCCCTGATGTGAAGTACGGCAAACGTATCCATGTGCTACCCATCGATGATACAGTAGAAGGCATCACTGGCAATCTCTTTGAGGTATACCTTAAGCCATACTTCCTGGAAGCTTATCGACCCATCCGAAAAGGAGACATTTTCCTTGTCCGGGGTGGGATGCGTGCTGTGGAGTTCAAAGTAGTGGAGACAGATCCCAGCCCTTATTGTATAGTTGCTCCAGACACAGTGATCCACTGTGAAGGGGAGCCTATCAAACGAGAGGATGAGGAAGAGTCATTGAATGAAGTAGGCTATGATGACATTGGAGGCTGCAGGAAGCAGCTAGCTCAGATAAAGGAAATGGTGGAGCTGCCCCTGAGACATCCTGCACTCTTCAAGGCAATTGGTGTGAAGCCTCCTCGAGGAATCCTGCTCTATGGGCCTCCTGGAACAGGGAAGACCCTAATTGCCCGAGCTGTGGCAAATGAGACTGGAGCATTCTTCTTCTTGATCAATGGCCCTGAGATCATGAGCAAGTTGGCTGGTGAGTCCGAGAGCAACCTTCGTAAAGCCTTTGAAGAGGCTGAAAAGAATGCACCTGCTATCATCTTCATTGATGAGCTGGATGCCATTGCTCCCAAAAGAGAGAAAACTCATGGAGAGGTGGAGCGGCGTATTGTATCACAATTGTTGACACTCATGGATGGCCTAAAGCAGAGAGCACATGTAATAGTGATGGCTGCAACCAACAGACCCAACAGCATTGACCCAGCCTTACGACGATTTGGTCGCTTTGACAGGGAGGTAGATATTGGAATCCCTGATGCTACAGGACGGTTGGAAATTCTCCAAATCCATACTAAGAACATGAAGCTGGCAGATGATGTGGACCTGGAACAGGTAGCCAATGAAACTCATGGGCATGTGGGTGCTGACTTAGCAGCCCTTTGTTCAGAGGCTGCTCTACAGGCCATCCGAAAGAAGATGGATCTTATTGACCTAGAGGATGAGACCATTGATGCTGAGGTCATGAACTCTCTGGCAGTTACTATGGATGACTTCCGGTGGGCCTTGAGCCAGAGCAACCCATCAGCACTGCGGGAAACTGTGGTAGAAGTGCCACAAGTAACCTGGGAAGACATTGGGGGCCTGGAGGATGTCAAACGTGAGCTTCAGGAGCTAGTCCAGTACCCTGTGGAGCATCCAGACAAATTCCTCAAGTTTGGCATGACACCATCCAAGGGAGTTCTGTTTTATGGACCTCCTGGTTGTGGGAAAACCTTGCTGGCTAAAGCTATTGCTAATGAATGTCAGGCCAACTTCATTTCCATCAAGGGTCCGGAGCTGCTTACTATGTGGTTTGGGGAGTCTGAGGCCAATGTCAGGGAAATCTTTGACAAGGCCCGCCAAGCTGCCCCATGTGTGCTCTTCTTTGATGAGCTGGATTCAATTGCCAAGGCCCGTGGTGGTAACATTGGAGATGGTGGTGGGGCTGCTGACCGAGTTATCAACCAGATCCTGACTGAAATGGATGGCATGTCCACAAAAAAGAATGTGTTCATCATTGGCGCTACCAACCGGCCTGACATCATTGATCCTGCCATCCTAAGACCTGGCCGCCTTGATCAGCTCATCTACATCCCACTTCCTGATGAGAAATCCCGTGTTGCCATCCTCAAGGCGAACCTGCGCAAGTCCCCAGTTGCCAAGGATGTAGATTTGGAGTTCCTGGCTAAAATGACTAACGGCTTCTCTGGAGCTGACCTGACAGAGATATGCCAGCGTGCTTGTAAGTTGGCCATTCGTGAATCCATCGAGAGTGAGATAAGGCGAGAACGTGAGAGGCAGACAAATCCATCAGCCATGGAGGTAGAAGAGGATGATCCAGTGCCAGAGATTCGCAGAGATCACTTTGAAGAAGCCATGCGCTTTGCCCGCCGTTCTGTCAGTGACAATGACATTCGGAAATATGAAATGTTTGCCCAGACGCTTCAGCAGAGTCGAGGCTTTGGCAGCTTCAGATTCCCTTCAGGAAATCAGGGTGGAGCTGGCCCCAGTCAGGGCAGTGGAGGTGGCACAGGTGGCAGTGTGTACACAGAAGACAATGATGATGACCTGTATGGCTAA

Related Sequences

XP_004873975.1 Protein

Vcp PREDICTED: transitional endoplasmic reticulum ATPase [Heterocephalus glaber]

Length: 806 aa      View alignments
>XP_004873975.1
MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSGNQGGAGPSQGSGGGTGGSVYTEDNDDDLYG