Details from NCBI annotation

Gene Symbol Ccdc78
Gene Name coiled-coil domain containing 78, transcript variant X4
Entrez Gene ID 101706279

Database interlinks

Part of NW_004624913.1 (Scaffold)

For more information consult the page for NW_004624913.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CCDC78 ENSCPOG00000010083 (Guinea pig)

Gene Details

coiled-coil domain containing 78

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000009054, Guinea pig)

Protein Percentage 74.17%
CDS Percentage 82.94%
Ka/Ks Ratio 0.84705 (Ka = 0.1965, Ks = 0.232)

CCDC78 ENSG00000162004 (Human)

Gene Details

coiled-coil domain containing 78

External Links

Gene Match (Ensembl Protein ID: ENSP00000293889, Human)

Protein Percentage 56.59%
CDS Percentage 68.27%
Ka/Ks Ratio 0.46594 (Ka = 0.3927, Ks = 0.8427)

Ccdc78 ENSMUSG00000071202 (Mouse)

Gene Details

coiled-coil domain containing 78

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000093155, Mouse)

Protein Percentage 62.17%
CDS Percentage 71.97%
Ka/Ks Ratio 0.4084 (Ka = 0.3265, Ks = 0.7995)

Genome Location

Sequence Coding sequence

Length: 1404 bp    Location: 1535357..1531325   Strand: -
>XM_004873830.1
ATGGAGGGTACAGCAGCTCAAGGCCGCAGGCCAGGGGCCCTCCCTCAGGCCACAGAGAATGTTGTACCACGAGTTAAGGACTGGCTGCCAGCAAAGCCCTGCTCCCTGCTCCCTGAGGGTGATCCAGCCTGGGCCACCAATCTAGAGTCAGAGTTCCTGTCAGATCTGGAGCTGAGTGAGGAGCAGCGGCTACAGATCTCTAAGGAGCTGGTCGACCTCCAGATCACAACCCATCGCCTGCAGGAGCAGCACGAGGCTGAAGTTTTCGAGCTGAAGAAGGAGGTCCTTCACCTGGAGAGCCGGGTGCTAGACCTGGAGCTACATGGAGACCGTGCCAGGGCAGGGCGCACAGCCCCAGTGGAGGCCAACCCAGCTCACCACCAGGCACTGGCACAAGAGTTCAGTCAGGAAGCCAAGGCACCTGGATACGCTGGTCACCGCAGACTCCAGCCCTTGTGCACCTCACAGCTGCTGGGAGGCTGGGAACAGCTGCAGGGAGAAGTGAAGCAGGTGCTGGAACGTCACAAAGCCCAGCAGCAGGCACTAGAGACACGGATGGCAGCCCTGGGCCAGCAGCTGCAGAGAGCCGAAGAGGATGCCAGGGCAGCCAGGCAGCAATTGGCTACACAATCTGTGGTGCTGTCCACCTGCAAGGGCCGCCTCTGCCAATCTGAGGCTGAAAATGCCCAGTTGCAGCTGCAGCTGAAGAAGATGAATGAAGAGTATGCCATCCAGCTGCAGCACTGTGCCCAAGAAGTGGTGAAATATGCCGATGGTGCAGGCCAAGCAGCCCTTCAGACATTTCTGGACACCACTCTGGAGAACATCCGGGCAGCGCACCGTAGCCGTGAGCAACAGCTGGCACGGGCTGCTCGGGTCTACCGCAAGCGTCTGGCAGATCTGAGCTGTAGGCATGAGGAGCTGCTGGTCACTTGCAGTAGGCAGCGGGAGCAGCCCCAGGCATTGGTGGACCCCAACATGGCACCCGGAACCCTCAAGGCTACCTTTGCTGCAGCTACTGACTTGGAGCCACTGCCCGTGCACCTGGCCACTGAGCTCAGTCACCTGCAGAAAGATGAGAAGGGACCTGGTGAAGCCTCCCAGGGGAGTGCGGCAGAGCCACAGCTTCTAAATAATGCATCCTGGGTCCAGATCTGCCAGAAGCTCCAAGACTTCTCCCAAGGCACCCAGGCAGAGCTGGAACGTGAACGAGCACAACTGTTGGTCAGGGCCTCTGAGGCTGAAGAGCGGCTTTCTGAGCTTCAGGAGTATGTGGACCAGCACCTTGGCAGGTATAAGCAGGAAGTCCTGAGGCTGAGGAAGCTGGTGGGTGCAGGGGACCCCTGGAAAGTGGGGTTCCCAACTGCAGCCAAGCCCCAGCATTCAAGGACCCACAGCCGCTAA

Related Sequences

XP_004873887.1 Protein

Ccdc78 PREDICTED: coiled-coil domain-containing protein 78 isoform X4 [Heterocephalus glaber]

Length: 467 aa      View alignments
>XP_004873887.1
MEGTAAQGRRPGALPQATENVVPRVKDWLPAKPCSLLPEGDPAWATNLESEFLSDLELSEEQRLQISKELVDLQITTHRLQEQHEAEVFELKKEVLHLESRVLDLELHGDRARAGRTAPVEANPAHHQALAQEFSQEAKAPGYAGHRRLQPLCTSQLLGGWEQLQGEVKQVLERHKAQQQALETRMAALGQQLQRAEEDARAARQQLATQSVVLSTCKGRLCQSEAENAQLQLQLKKMNEEYAIQLQHCAQEVVKYADGAGQAALQTFLDTTLENIRAAHRSREQQLARAARVYRKRLADLSCRHEELLVTCSRQREQPQALVDPNMAPGTLKATFAAATDLEPLPVHLATELSHLQKDEKGPGEASQGSAAEPQLLNNASWVQICQKLQDFSQGTQAELERERAQLLVRASEAEERLSELQEYVDQHLGRYKQEVLRLRKLVGAGDPWKVGFPTAAKPQHSRTHSR