Sequence details NCBI ID: XM_004873733.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Rhbdf1
Gene Name rhomboid 5 homolog 1 (Drosophila), transcript variant X9
Entrez Gene ID 101707862

Database interlinks

Part of NW_004624913.1 (Scaffold)

For more information consult the page for NW_004624913.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

RHBDF1 ENSCPOG00000006289 (Guinea pig)

Gene Details

rhomboid 5 homolog 1 (Drosophila)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000005669, Guinea pig)

Protein Percentage 97.43%
CDS Percentage 93.96%
Ka/Ks Ratio 0.05086 (Ka = 0.0128, Ks = 0.251)

RHBDF1 ENSG00000007384 (Human)

Gene Details

rhomboid 5 homolog 1 (Drosophila)

External Links

Gene Match (Ensembl Protein ID: ENSP00000262316, Human)

Protein Percentage 95.91%
CDS Percentage 90.14%
Ka/Ks Ratio 0.03205 (Ka = 0.0194, Ks = 0.6045)

Rhbdf1 ENSMUSG00000020282 (Mouse)

Gene Details

rhomboid family 1 (Drosophila)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000020524, Mouse)

Protein Percentage 96.61%
CDS Percentage 88.4%
Ka/Ks Ratio 0.02282 (Ka = 0.0167, Ks = 0.7321)

Rhbdf1 ENSRNOG00000020594 (Rat)

Gene Details

rhomboid 5 homolog 1 (Drosophila) (Rhbdf1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000027965, Rat)

Protein Percentage 96.5%
CDS Percentage 88.79%
Ka/Ks Ratio 0.025 (Ka = 0.0172, Ks = 0.6896)

Genome Location

Sequence Coding sequence

Length: 2610 bp    Location: 954422..938537   Strand: -
Raw sequence   
>XM_004873733.1
ATGCTGACCTGGGGCCAGGCCTGCACTCCACCTGGAACCATGAATGAAGCCCGCAGGGACAGCACAAGCAGTCTGCAGCGCAAGAAGCCACCCTGGTTAAAACTGGACATTCCAGCTGCAGTGCCCCTGGCTACAGAGGAACCTGGCTTCCTGCAGCCCTTAAGACGCCAGGCTTTCCTGCGGAGTGTGAGCATGCCAGCTGAAACGGCCCATGTGCCTTCACCCTACCATGAGCCCCGGCGGCCTGTGCTGCAGCGGCAGACGTCTATCACACAGACCATCCGCAGGGGGACAGCTGATTGGTTCGGAGTGAGCAAAGACAGTGACAGTACCCAGAAGTGGCAACGCAAAAGCATCCGTCACTGCAGCCAGCGATATGGGAAGCTGAAGCCTCAGGTCATCCGGGAACTGGACCTACCCAGCCAGGACAATGTGTCGCTGACCAGTACTGAGACTCCACCTCCACTATATGTGGGGCCATGCCAGCTGGGCATGCAGAAGATCATAGACCCTCTAGCCCGGGGCCGGGCCTTCCGCCAGCCAGATGATACTGCTGATGGCCTGAGTGCTCCACACACTCCTGTCACGCCAGGTGCTGCCTCCCTCTGCTCCTTCTCCAGCTCCCGCTCAGGTTTCAACCGGCTCCCTCGGAGACGAAAGCGCGAATCTGTGGCCAAGATGAGCTTCCGGGCAGCCGCAGCACTAGTGAAGGGCCGCTCTGTTAGGGATGGCACATTGCGCCGGGCACAGCGCCGAAGCTTTACTCCTGCCAGCTTCCTGGAGGAGGACACAGTGGACTTCCCTGATGAGCTGGACACATCTTTCTTTGCCCGGGAAGGTGTCCTCCACGAGGAGCTGTCCACATACCCGGACGAGGTGTTTGAGTCCCCATCAGAGGCAGCGCTCAAGGACTGGGAGAAAGCCCCTGAGCAGGCTGACCTCACGGGTGGGGCCCTGGACCGAAGCGAGCTGGAGCGCAGCCACTTGATGCTGCCCCTGGAGCGCGGCTGGCGGAAGCAAAAGGACGGTGGCACAGTGGCCCCACAGCCCAAAGTGCGGCTTCGACAGGAGGTCGTGAGCCCTGTGGGGCCACGACGGGGCCAGCGCATTGCTGTTCCTGTGCGGAAGCTCTTTGCCCGTGAGAAGCGGCCATATGGGCTGGGTATGGTGGGGCGCCTCACCAACCGCACCTACCGAAAGCGTATTGACAGCTACGTCAAGCGCCAGATCGAAGACATGGATGACCACAGGCCTTTCTTCACCTACTGGCTCACCTTCGTGCACTCGCTCGTCACCATTCTAGCCGTTTGCATCTATGGCATCGCGCCTGTGGGCTTCTCACAGCATGAGACGGTGGACTCGGTATTGCGGAACCGGGGCGTTTACGAGAATGTCAAGTACGTGCAGCAGGAGAACTTCTGGATCGGCCCCAGCTCGGAGGCCCTCATTCACCTGGGTGCCAAGTTCTCACCCTGCATGCGCCAGGATCCACAGGTGCACAGCTTCATCAGCGCTGCCCGTGAGCGGGAGAAGCACTCGGCCTGCTGCGTGCGCAATGACCGGTCGGGCTGTGTGCAGACATCAGAGGAGGAGTGCTCGTCCACGCTGGCAGTGTGGGTGAAGTGGCCCAGGCATCCCAGCGCCCCAGACCTTGCTGGTCACAAGAGGGAGTTTGGCTCTGTCTGCCACCAAGACCCCAGGGTGTGTGATGAGCCCTCCTCTGAGGATCCCCATGAGTGGCCAGAAGACATCACCAAGTGGCCGATCTGCACCAAAAACAGTGCTGGGAACCACACCAATCATCCTCACATGGACTGTGTCATAACGGGCCGGCCCTGCTGCATTGGCACCAAGGGCAGGTGTGAAATCACCTCCCGGGAGTACTGTGACTTCATGAGAGGCTACTTCCATGAGGAGGCCACACTCTGCTCTCAGGTGCACTGCATGGATGATGTGTGTGGTCTCCTGCCTTTCCTCAACCCCGAGGTGCCTGACCAGTTCTACCGTCTGTGGCTGTCCCTCTTCCTGCACGCTGGGATTCTGCACTGCCTGGTGTCCGTTTGCTTCCAGATGACTGTCCTGCGTGACCTGGAAAAGCTGGCAGGCTGGCACCGCATAGCCATCATCTATCTTCTGAGTGGTATCACTGGCAACCTGGCCAGTGCCATCTTCCTGCCGTACAGGGCGGAGGTGGGCCCAGCCGGCTCGCAGTTTGGCATCCTGGCCTGCCTCTTCGTGGAGCTCTTCCAGAGCTGGCAGATCCTGGCACGGCCCTGGCGTGCCTTCTTCAAGCTGCTGGCTGTGGTGCTCTTCCTCTTCGCCTTTGGGCTGCTACCCTGGATTGACAACTTTGCCCACATCTCAGGCTTCATCAGTGGCCTCTTCCTCTCCTTTGCCTTCCTGCCCTACATCAGCTTCGGCAAGTTTGACTTGTACCGCAAACGCTGCCAGATTATCATCTTCCAGGCAGTCTTCCTGGGCCTGCTGGCTGGCCTGGTGATCCTCTTCTACTTCTATCCCGTCCGCTGTGAGTGGTGCGAGTTCCTCACCTGCATCCCCTTCACCGACAAGTTCTGTGAGAAGTATGAGCTGGATGCTCAGCTCCACTAA

Related Sequences

XP_004873790.1 Protein

Rhbdf1 PREDICTED: inactive rhomboid protein 1 isoform X9 [Heterocephalus glaber]

Length: 869 aa      View alignments
>XP_004873790.1
MLTWGQACTPPGTMNEARRDSTSSLQRKKPPWLKLDIPAAVPLATEEPGFLQPLRRQAFLRSVSMPAETAHVPSPYHEPRRPVLQRQTSITQTIRRGTADWFGVSKDSDSTQKWQRKSIRHCSQRYGKLKPQVIRELDLPSQDNVSLTSTETPPPLYVGPCQLGMQKIIDPLARGRAFRQPDDTADGLSAPHTPVTPGAASLCSFSSSRSGFNRLPRRRKRESVAKMSFRAAAALVKGRSVRDGTLRRAQRRSFTPASFLEEDTVDFPDELDTSFFAREGVLHEELSTYPDEVFESPSEAALKDWEKAPEQADLTGGALDRSELERSHLMLPLERGWRKQKDGGTVAPQPKVRLRQEVVSPVGPRRGQRIAVPVRKLFAREKRPYGLGMVGRLTNRTYRKRIDSYVKRQIEDMDDHRPFFTYWLTFVHSLVTILAVCIYGIAPVGFSQHETVDSVLRNRGVYENVKYVQQENFWIGPSSEALIHLGAKFSPCMRQDPQVHSFISAAREREKHSACCVRNDRSGCVQTSEEECSSTLAVWVKWPRHPSAPDLAGHKREFGSVCHQDPRVCDEPSSEDPHEWPEDITKWPICTKNSAGNHTNHPHMDCVITGRPCCIGTKGRCEITSREYCDFMRGYFHEEATLCSQVHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLSGITGNLASAIFLPYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFAFGLLPWIDNFAHISGFISGLFLSFAFLPYISFGKFDLYRKRCQIIIFQAVFLGLLAGLVILFYFYPVRCEWCEFLTCIPFTDKFCEKYELDAQLH