Sequence details NCBI ID: XM_004873612.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Sema5b
Gene Name sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B, transcript variant X1
Entrez Gene ID 101700437

Database interlinks

Part of NW_004624912.1 (Scaffold)

For more information consult the page for NW_004624912.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SEMA5B ENSCPOG00000022428 (Guinea pig)

Gene Details

sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000017585, Guinea pig)

Protein Percentage 94.18%
CDS Percentage 92.51%
Ka/Ks Ratio 0.0776 (Ka = 0.0266, Ks = 0.3423)

SEMA5B ENSG00000082684 (Human)

Gene Details

sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B

External Links

Gene Match (Ensembl Protein ID: ENSP00000389588, Human)

Protein Percentage 94.37%
CDS Percentage 90.03%
Ka/Ks Ratio 0.04197 (Ka = 0.0244, Ks = 0.5801)

Sema5b ENSMUSG00000052133 (Mouse)

Gene Details

sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000057494, Mouse)

Protein Percentage 93.72%
CDS Percentage 87.97%
Ka/Ks Ratio 0.04179 (Ka = 0.0288, Ks = 0.6889)

Sema5b ENSRNOG00000002238 (Rat)

Gene Details

sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B (Sema5b), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000033170, Rat)

Protein Percentage 94.08%
CDS Percentage 87.0%
Ka/Ks Ratio 0.03289 (Ka = 0.0274, Ks = 0.8338)

Genome Location

Sequence Coding sequence

Length: 3357 bp    Location: 1369983..1244801   Strand: -
Raw sequence   
>XM_004873612.1
ATGGTGGTCCCAGGACCCCTGGCTGTGTCACTGTTGCTGCCCAGCCTCGCTCTGCTGGTGGCCCACCTTTCCAGCTCCCATGATGTCTCCAGTGAGCCAAGCGGTGAGCAGCAACTCTGCACCCTGAGAGAGCACCCCACTGTGACCTTTGAAGATCTGAAGCCGTGGGTCTCTAACTTCACCTACCCTGGAGCTCGAGATTTCTCTCAACTTGCTCTGGATCCTACCAGGAATCAGCTCATCGTGGGAGCCAGGAACTACCTCTTCAGACTCAGCCTTGCCAATGTCTCCCTCCTTCAGGCCACAGAGTGGGCCTCCAATGAGGACACACGCCGCTCGTGCCAGAGCAAAGGGAAGACTGAGGAGGAGTGCCAGAACTACGTGCGGGTCCTGATCCTCACTGGCCGGAAGGTGTTCATGTGTGGCACCAACGCCTTTTCCCCCGTGTGCTCCAGCAGACAGGTGGGGAACCTCAGCAGAACCATTGAGAAGATCAACGGTGTGGCCCGCTGTCCCTACGACCCTCGCCACAACTCCACAGCTGTCATCTCCTCCCAGGGGGAGCTGTACGCGGCCACGGTTATCGACTTCTCTGGTCGGGACCCTGCCATCTACCGTAGCCTGGGCAGTGGGCCACCGCTTCGCACTGCCCAGTATAACTCCAAGTGGCTCAATGAGCCAAACTTTGTGGCAGCCTATGACATAGGGCTGTTTGCATACTTCTTTCTGCGGGAGAATGCGGTGGAGCACGACTGTGGGCGCACTGTGTACTCTCGGGTGGCCCGAGTATGCAAGAACGATGTGGGGGGCCGCTTCCTGCTGGAGGACACGTGGACCACATTCACGAAGGCCCGGCTTAACTGCTCCCGCCCGGGTGAGGTTCCCTTCTACTACAACGAGCTGCAGAGTGCCTTCCACCTGCCCGAGCAGGACCTCATCTACGGAGTCTTCACCACCAATGTAAACAGCATTGCCGCTTCTGCTGTCTGCGCCTTCAACCTCAGTGCCATCTCCCAAGCTTTCAATGGCCCGTTCCGTTACCAGGAGAACCCCAGGGCTGCCTGGCTCCCCATCGCCAACCCCATTCCCAATTTCCAGTGTGGCACCTTGCCTGAGACTGGCCCCAACGAGAACCTCACAGAGCGCAGCCTGCAGGACGCGCAGCGCCTATTCCTGATGAGCGAGGCCGTGCAGCCCGTGACACCCGAGCCCTGTGTCACCCAGGACAGCGTGCGTTTCTCGCACCTCGTGGTGGACCTAGTGCAGGCCAAGGACACGCTCTACCACGTGCTCTACATCGGCACCGAGTCGGGCACCATCCTGAAGGCGCTGTCCACCACCAGCCGCAGCCTCCACGGCTGCTACCTGGAGGAACTGCACGTGCTGCCGCCCGGGCGCCACGAGCCCCTGCGCAGCCTTCGCATTCTGCACAGCGCGCGCGCGCTCTTCGTGGGGCTGAGCGACGGCGTGCTGCGCGTCCCGCTGGAGAGGGCATGCCTGGGGGCACGGGACCCGTACTGTGGCTGGGACGGGAAACAGCAGCGGTGCAGCACTCTCGAGGACAGCGCCAACATGAGCCTCTGGACCCAGAACATCACAGCCTGTCCTGTTCAAAATGTGACACGGGATGGGGGCTTTGGCCCATGGTCACCTTGGCAGCCTTGCGAGCACCTAGATGGAGAGAACTCGGGCTCCTGCATGTGCAGGGCCCGAGCCTGCGACTCCCCTCGACCCCGCTGTGGGGGTCTCAACTGCCAGGGCCCGGCCATCCACATTGCCAATTGCTCCAGGAACGGGGCGTGGACGCCATGGTCCTCCTGGGCACAGTGCAGCACGTCATGTGGGATTGGCTTCCAGGTCCGCCAGCGAAGCTGCAGCAACCCTGCGCCCCGCCACGGGGGCCGCATCTGTGTGGGCAAGAGCCGCGAGGAGCGGTTCTGTAACGAAAACACGCTTTGCCCGGTGCCTATCTTCTGGGGCTCCTGGGGCTCCTGGAGCAAGTGCAGCAGCAACTGCGGAGGCGGCGTGCAGTCCAGGCGTCGCGCCTGCGAGAATGGCAACTCCTGCCCTGGCTGCGGCGTGGAGTTCAAGACCTGCAACCCCGAGGCCTGCCCCGAGGTGCGGCGCAACACGCCGTGGACGCCGTGGCTGCCTGTGAACGTGACGCAGGGCGGGGCACGGCAGGAGCAGCGCTTCCGCTTTACGTGCCGTGCGCCCCTGCCCGACCCCCATGGCCTGCAGTTTGGCCGGAGGAGGACAGAGACGCGAACGTGCCCTGCTGACGGCTCCGGGGCCTGCGACACGGACGCCCTGGTGGAGGAGCTACTGCGCAGTGGCAGCGCCTCCCCGCACACGCTGAGCGGGGGCTGGGCCGCCTGGGGCCCGTGGTCGTCCTGTTCTCGAGACTGCGAGCTGGGCTTCCGCGTCCGCAGAAGAACATGCACCAACCCAGAGCCCCGCAACGGAGGCCTGCCCTGCGCGGGCGACGCCGCCGAGTACCAGGACTGCAACCCGCAGGCCTGCCCAGTTCGGGGAGCCTGGTCCTGCTGGACCACGTGGTCCCAGTGCTCAGCCTCCTGCGGTGGGGGGCACTATCAGCGCACACGTTCCTGCACCAGCCCGGCACCCTCCCCAGGTGAGGACATCTGTCTGGGGCTGCACACGGAGGAGGCACTATGCGCCACACAGGCATGCCCAGGTACTGGGTGCATTTGGCTGGGGCTGGGGGACATCAAGGAGCCTCGGGTTCCCAGTAGGGGTTGGTGTTGGAGTACTCGACCTCATCCCACCTCACTCCCCACAGAAGGCTGGTCACCGTGGTCTGAGTGGGGTGAATGCACTGAGGATGGAACCCAGAGCCGCAGCCGGCACTGTGAAGAGCTTGTCCCAGGGCCCGGTGCCTGTGCTGGCAACAGCAGCCAGAACCGCCCCTGCCCCTACAGTGAGATTCCCATAATCCTGCCTGCCTCTAGTATGGAGGAGACTGCTGGCTGTGGAGGGTTTAATCTCATCCACCTGGTGGTCACAGGCGTCTCCTGCTTTCTGGGCTCTGGGCTCCTGACCGTGGCAGTATACCTCTCTTGCCAACACTGCCAGCGCCAGTCTCAGGAGTCCACACTTGTTCATCCTGCCACCCCCAACCACCTGCACTACAAGGGCACCCCCAAGAATGAGAAGTACACACCTATGGAGTTCAAGACCCTGAACAAGAATAACTTGATCCCTGATGACAGAGCCAACTTCTACCCTCTTCAGCAGACTAATGTGTATACGACCACCTATTACCCCAGCCCCCTGAACAAGCCCAGCTTCCGACCTGAGGCCTCACCTGGACAGCGGTGCTTCCCCAACAGCTGA

Related Sequences

XP_004873669.1 Protein

Sema5b PREDICTED: semaphorin-5B isoform X1 [Heterocephalus glaber]

Length: 1118 aa      View alignments
>XP_004873669.1
MVVPGPLAVSLLLPSLALLVAHLSSSHDVSSEPSGEQQLCTLREHPTVTFEDLKPWVSNFTYPGARDFSQLALDPTRNQLIVGARNYLFRLSLANVSLLQATEWASNEDTRRSCQSKGKTEEECQNYVRVLILTGRKVFMCGTNAFSPVCSSRQVGNLSRTIEKINGVARCPYDPRHNSTAVISSQGELYAATVIDFSGRDPAIYRSLGSGPPLRTAQYNSKWLNEPNFVAAYDIGLFAYFFLRENAVEHDCGRTVYSRVARVCKNDVGGRFLLEDTWTTFTKARLNCSRPGEVPFYYNELQSAFHLPEQDLIYGVFTTNVNSIAASAVCAFNLSAISQAFNGPFRYQENPRAAWLPIANPIPNFQCGTLPETGPNENLTERSLQDAQRLFLMSEAVQPVTPEPCVTQDSVRFSHLVVDLVQAKDTLYHVLYIGTESGTILKALSTTSRSLHGCYLEELHVLPPGRHEPLRSLRILHSARALFVGLSDGVLRVPLERACLGARDPYCGWDGKQQRCSTLEDSANMSLWTQNITACPVQNVTRDGGFGPWSPWQPCEHLDGENSGSCMCRARACDSPRPRCGGLNCQGPAIHIANCSRNGAWTPWSSWAQCSTSCGIGFQVRQRSCSNPAPRHGGRICVGKSREERFCNENTLCPVPIFWGSWGSWSKCSSNCGGGVQSRRRACENGNSCPGCGVEFKTCNPEACPEVRRNTPWTPWLPVNVTQGGARQEQRFRFTCRAPLPDPHGLQFGRRRTETRTCPADGSGACDTDALVEELLRSGSASPHTLSGGWAAWGPWSSCSRDCELGFRVRRRTCTNPEPRNGGLPCAGDAAEYQDCNPQACPVRGAWSCWTTWSQCSASCGGGHYQRTRSCTSPAPSPGEDICLGLHTEEALCATQACPGTGCIWLGLGDIKEPRVPSRGWCWSTRPHPTSLPTEGWSPWSEWGECTEDGTQSRSRHCEELVPGPGACAGNSSQNRPCPYSEIPIILPASSMEETAGCGGFNLIHLVVTGVSCFLGSGLLTVAVYLSCQHCQRQSQESTLVHPATPNHLHYKGTPKNEKYTPMEFKTLNKNNLIPDDRANFYPLQQTNVYTTTYYPSPLNKPSFRPEASPGQRCFPNS