Sequence details NCBI ID: XM_004873565.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Tro
Gene Name trophinin, transcript variant X4
Entrez Gene ID 101703157

Database interlinks

Part of NW_004624910.1 (Scaffold)

For more information consult the page for NW_004624910.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

TRO ENSG00000067445 (Human)

Gene Details

trophinin

External Links

Gene Match (Ensembl Protein ID: ENSP00000173898, Human)

Protein Percentage 79.58%
CDS Percentage 85.71%
Ka/Ks Ratio 0.38237 (Ka = 0.1173, Ks = 0.3067)

Tro ENSMUSG00000025272 (Mouse)

Gene Details

trophinin

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000108329, Mouse)

Protein Percentage 73.03%
CDS Percentage 80.82%
Ka/Ks Ratio 0.38245 (Ka = 0.1714, Ks = 0.4482)

Tro ENSRNOG00000047491 (Rat)

Gene Details

trophinin

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000064833, Rat)

Protein Percentage 76.76%
CDS Percentage 81.09%
Ka/Ks Ratio 0.24947 (Ka = 0.1516, Ks = 0.6079)

Genome Location

Sequence Coding sequence

Length: 4716 bp    Location: 293445..303550   Strand: +
Raw sequence   
>XM_004873565.1
ATGCGTTCCCTGTTGGCTGCAACCAAGGACCCACCTGTTGCTAACCGGCCTAAGAAAAGCAAGACCAAGAAGACCCCTGTTAAGGCTATTGCTAAGTCCACATCTGCTGCCCCTGCAGTCCCATCTGCCACTGAGATTGCCACCAAACCCAAAATAACTTTGCAAGCTTTAAACCTACCAATCTTCGCCCAGATCAGCCAGGGTTCAGCTACCATTGAGGCAGCCAATATTCAGACTTCTTCAGGTCCTGCTCCACCTAAGAAAGCCAACAAGATGAAGAGAATTACTGCCAAGGCAGCCCTAGTCTCTCAGTGTTGCCCATCAGGCAGTGAGGGTGTCACTGCCCAGCTCAAGTCACCTTTGCAGGCCCCAAACCTACCAGTCATCTCACAGACTATCCAGGCTCCAGTTGCCAGTGAGTTGGCCAATTCCCCAGCCTTTATAGCCTCTACCAAGCCTAAGAAAACTCCCAAGTCTAAGAAAGCTGCTAATAAGGCTGTAGGTAGTGCTAATGAGATCTCATTGGCTATAGGTACTACCCAAGGTCAAATTAACAATGAGACAGCAAATATCCAGGCCACAGCAGCCACTATCAGAACCAAGAAAGCTTCCAAAGCCAAGAGGACTACTGCTAAGGCCACAAATACTGACACAGAGCATCTCGAGTCCCTAAATGCCACTGAGACAGCTACCAGGCAGACTGAGACCTCAGCAGCAGTTCTCTGGCCCAAAAAACCTAAGGGCAAAAAAGTTGCCAGTAAGGGCCCAAATTCTGCCTTTGAGGTCTCTGAGGCCCCACCTGCCACTCAAATGGTTACAAACCAAGCCCTAGTGGCCACCCTTCGGGTCAAGAGGGGGTCTAGGGCTCGAAAGGCTGCCACAAAGGTTCAGGTAACTGAAAGCCAAACCCAGATTGCTGACCAAGGGAGTCCAGCCAAGATGGCCACCTCTCAGATGAGCATAAATGCCCTTGAGACTCAGGTTGCTACTGCTGTCCAAGCCCTGGCAGATGACTATCTGGCTCAGTTGAGTCTGGAACCCACAACTAGGACCCGGGGCAAGAGAAACCGAAAGTCCAAACATCTGAATGGCGATGAGAGAAGTAGCATTAATTACAGGAGGATCCCATGGGGCCGAAGGCTTTCACCACCCCGAGATGTGGCCATTTTGCAAGAAAGGGCAAATAAGTTGGTGAAATATCTCTTGGTTAAGGACCAGACAAAGATCCCCATCAAGCGTTCAGACATGCTGAAAGATGTCATTCAAGAATATGATGAATATTTCCCAGAGATCATTGAAAGAGCAAGCTACGCTCTGGAGAAGATGTTTCGTGTCAATCTGAAGGAAATCGATAAGCAGAGTAGCTTGTATATTCTCATCAGTACTCAGGAATCCTCTGCAGGCATACTGGGAACGACCAAGGATACACCCAAGCTGGGTCTCCTCATGGTGATTCTGAGTGTCATTTTTATGAATGGCAACAAGGCCAATGAGGCTGTCATCTGGGAGGTGCTGCGCAAGTTGGGGCTGCACCCTGGGGTGAGGCATTCACTTTTTGGGGAAGTGAGGAAACTCATCACAGACGAGTTCGTGAAGCAGAAGTACTTGGAGTACAAGAGGGTCCCCAACAGTCGACCACCTGAATATGAGTTCTTCTGGGGCCTGCGCTCTTACCATGAGACTAGCAAAATGAAGGTCCTCAAGTTTGCTTGCAAGGTACAGAAGAAAGACCCCAAGGACTGGGCTGCTCAGTATCGGGAAGCAGTGGAGATGGAAGTCCAAGCTGCAGCTGTGGCTGTGGCTGAGGCTGAGGCCAGGGCTGAGGCAAGAGCCCAAATGGGGATTGGAGAGGAAGCTGTGGCTGGGCCCTGGAACTGGGATGACATGGATATTGACTGCCTAACAAGGGAAGAGTTAGGTGATGACACTCAGGCCTGGAACAGATTTTCATTTGAAATTGAGGCTAGAACCCAAGAAAATGCAGATGAAACCACCAATGTCAACTTCAACCAAGAAGATAGCACCAGGGATAGCTTCAGTGATGGTGCTAGTATTAGCTTCAATGGAGCACCCAGCTCCAGTGGTGGCTTTGGTGGCGGAGGTGGTATTACCTTTGGTGATGCACCCAGCACTAGTGCAGGCTTCAGCAGTGTAGCCAGCATTAGCTTCGGTGGCACACCTAGTACCAGTGCCAGCTTCAGCAGTGTAGCCAGCATTAGTTTTGGGAGTGCACTTAACACTAGCACTAGTTTCACTGGTGGAGCCAGTATCAACTTTGGCGACACACCCAGTACCAGTGCCAGTTTCTGTAGCACAGCCAGCATTAGCTTTGGTGGTACACCCAGTACTATTACTAGTTTCAGTGGTGGAGCCAGCATTAGCTTTGATGGTGCACCCAGCACTAGCACCAGTTTCAGCAGTACAGCCAGCATTAGCTTTGGTGGTACACCCAGCACTAGCACTAGTTTCAGTGGTGGAGCTAGCATTAGCTTTGGTGGTGCACCCAACATTAGCACTAATTTCAGTGGTGGAGCAAGCATTAGCTTTGATGGTGCACCGAACTCCAGCACTAGTTTCAGCGGTGGAGCGAGCATTAGTTTTGGTGGTACACCTTGTACCAGTGCCAGTTTCAGTGCTGGAGCCAGCTCTAGCTTTGGAGGCACACTCAACAGCATAACAACTGGCTTCAGTGGTGCACTTAGCAGCAGCACTAGCTTTGGCAGTGCATCCACCACAAGCACTGTCTTCAGTGGTGCACTTAACACCAGCACTGGCTTTGGAGGTACACTTAGCACCAGTGTCTGCTTTGGTGGCTCTCCTATATCTGGTTCCAGTTTTGGAGGCACACTCAGTACTAGTATCTGCTTTGGTGGCTGTCCTAGCACCAGCATTGGTTTTGGCTGTGCGAGCACCAGCATACTTAGCACCAGTGTCTCCTTTGGTGGCTCTTCTAGTACCAGTTCTGACTTTGGAGGCACACTTAGCACCAGTGTCTGCTTTGGTGGCTCTCCCAGCACTAGTGCCAACTTCGATGGTGCACTAAATAGCAGTGCTGGCTTTGGTGGTGCAATCAGCACCAGTGTTGGCTTTGGTGATGCTGTCAACACCAGTGCCAGCTTTGGCAGTACACTCAACAGCAGTGCTGGCTTTGGCAGTGCCATTAGCACTGGTGCCAGCTTTAGTGGTGCATTCAGTAGCAGTGCTGGATTTAGCAGTGCCATCAACACCAGTGCTGGCTTTGATGGTGCTGTCAGTACTTGTACTGGGTTTGGCAGTGCACTCAATAGCAGTGCTAGCTTTGGCAGTGTCATTAGCACTAGTGCCAGCTTTGGTGGTGCACTCAACAGCAGTTCTGGCTTTGGCAGTACACTTAGTACCAGTGCTGGCTTTGGCAATGCTCACAACACTAGTGCCAGCTTTGATGGAGTGCTCAACACCAGTGCTGGCTATGGTGGAGCTATTAGCACCACTGCTGGCTTCAGTGGCGCACCAAGCACCAACCCTGGCTTTGGCAGTGCATTCAGCACCAGTGCTGGCTTCAGTGGGGCACTTAGTATCACTACTAATTTTGGTGGTACTCCCAGCAGCAACATTGGCTTTGATAGTGCTCCCAGCACCAGTGTCAGCTTTGATGGTGCCCACAGCACCAGCCTGTGTTTTGGTGGAGCTCCCAGCACTGGCCTCTGCTTCGGCAGTGCATCTAACACAAACTTATGCTTTGGTGGCTCTCCTAGCACCAGTGCCTGCTTCAGTGGTGCTACCAGTGCCAGTTTTAGTGATGGACCGAGCACTAGTGCCGGTTTCAGTTTTGGCAATGGGTTAAGCACCAGTGCTGGATTTGGAGGGGGACTGAGCACCAGTGCTGGCTTTGGTGGCAGCCTAAGCACTAGCACTGGCTTCGGTGGCAGCCTAGGAACCAGCACTAGCTTTGACAGTGGCCTAGGCACCAGCACTGACTTCAGTGGCGGACTAAGCACCAGCGCTGGCTTCGGTGGTGGACTAAGTACCAGTGCTGGCTTCGGTGGTGGACTAGGTACCAATGCTGACTTTGGTGGTGGACTAGGCACCGTTGCTGGCTTTGGTGGCAGACTAGGCACCGGTGCTGGCTTCGGTGGTGGACTAGGCACCAGCACTGGCTTTGGTGGTGGACTGGTCACTACTGATGGCTTTGGTGGTGGACTGGGTACCAGTGCTGCTTTTGGCAGCACACTTGGCACTTGTTCAGGCTTTAGTGGTAGCCTCAGCACCAGCGATGGCTTTGGCAGTGGGCCTAATGCCAGCTTCGACAGAGGACTGAGTTCCATCATTGGCTTTGGCAGTGGTTCCAACACCAGCACTGGCTTTCCTGGCGAACCCAGCACTGGCACCAGCTTCAGTAGTGGACCAAGTTCTATTGTTGGCTTCAGTGGTGGACCAAGCACTGGTGCCGGCTTCTGCAGTGAACCAAGCACTGGTGGCTATGGTGGTGGACTGAGCACTGGAGCTAGCTTTGCTGGATCAAGCCCTGGAGCTGGCTTTGGTGTTGGACTGAGCACCAGTATTGGCTTCAGTGGTGGACCAAGCAGCAGTGCTAACTTCGGTGGTGGACTGAACACCAGTGCAGGATTCAGCGGTGAACCAAGTACCAGTTCTGGATTCGGCGGTGGACCAAGTACCGGTGATGGCTTTGGTGGGGGGGCCACTAGCCTTGGTGCCTGTGGCTTCTCTTACAGCTAG

Related Sequences

XP_004873622.1 Protein

Tro PREDICTED: trophinin isoform X4 [Heterocephalus glaber]

Length: 1571 aa      
>XP_004873622.1
MRSLLAATKDPPVANRPKKSKTKKTPVKAIAKSTSAAPAVPSATEIATKPKITLQALNLPIFAQISQGSATIEAANIQTSSGPAPPKKANKMKRITAKAALVSQCCPSGSEGVTAQLKSPLQAPNLPVISQTIQAPVASELANSPAFIASTKPKKTPKSKKAANKAVGSANEISLAIGTTQGQINNETANIQATAATIRTKKASKAKRTTAKATNTDTEHLESLNATETATRQTETSAAVLWPKKPKGKKVASKGPNSAFEVSEAPPATQMVTNQALVATLRVKRGSRARKAATKVQVTESQTQIADQGSPAKMATSQMSINALETQVATAVQALADDYLAQLSLEPTTRTRGKRNRKSKHLNGDERSSINYRRIPWGRRLSPPRDVAILQERANKLVKYLLVKDQTKIPIKRSDMLKDVIQEYDEYFPEIIERASYALEKMFRVNLKEIDKQSSLYILISTQESSAGILGTTKDTPKLGLLMVILSVIFMNGNKANEAVIWEVLRKLGLHPGVRHSLFGEVRKLITDEFVKQKYLEYKRVPNSRPPEYEFFWGLRSYHETSKMKVLKFACKVQKKDPKDWAAQYREAVEMEVQAAAVAVAEAEARAEARAQMGIGEEAVAGPWNWDDMDIDCLTREELGDDTQAWNRFSFEIEARTQENADETTNVNFNQEDSTRDSFSDGASISFNGAPSSSGGFGGGGGITFGDAPSTSAGFSSVASISFGGTPSTSASFSSVASISFGSALNTSTSFTGGASINFGDTPSTSASFCSTASISFGGTPSTITSFSGGASISFDGAPSTSTSFSSTASISFGGTPSTSTSFSGGASISFGGAPNISTNFSGGASISFDGAPNSSTSFSGGASISFGGTPCTSASFSAGASSSFGGTLNSITTGFSGALSSSTSFGSASTTSTVFSGALNTSTGFGGTLSTSVCFGGSPISGSSFGGTLSTSICFGGCPSTSIGFGCASTSILSTSVSFGGSSSTSSDFGGTLSTSVCFGGSPSTSANFDGALNSSAGFGGAISTSVGFGDAVNTSASFGSTLNSSAGFGSAISTGASFSGAFSSSAGFSSAINTSAGFDGAVSTCTGFGSALNSSASFGSVISTSASFGGALNSSSGFGSTLSTSAGFGNAHNTSASFDGVLNTSAGYGGAISTTAGFSGAPSTNPGFGSAFSTSAGFSGALSITTNFGGTPSSNIGFDSAPSTSVSFDGAHSTSLCFGGAPSTGLCFGSASNTNLCFGGSPSTSACFSGATSASFSDGPSTSAGFSFGNGLSTSAGFGGGLSTSAGFGGSLSTSTGFGGSLGTSTSFDSGLGTSTDFSGGLSTSAGFGGGLSTSAGFGGGLGTNADFGGGLGTVAGFGGRLGTGAGFGGGLGTSTGFGGGLVTTDGFGGGLGTSAAFGSTLGTCSGFSGSLSTSDGFGSGPNASFDRGLSSIIGFGSGSNTSTGFPGEPSTGTSFSSGPSSIVGFSGGPSTGAGFCSEPSTGGYGGGLSTGASFAGSSPGAGFGVGLSTSIGFSGGPSSSANFGGGLNTSAGFSGEPSTSSGFGGGPSTGDGFGGGATSLGACGFSYS