Sequence details NCBI ID: XM_004872747.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Sp1
Gene Name Sp1 transcription factor, transcript variant X2
Entrez Gene ID 101697506

This gene is present in the GenAge database and has been identified as potentially important to ageing in humans.

Database interlinks

Part of NW_004624904.1 (Scaffold)

For more information consult the page for NW_004624904.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SP1 ENSCPOG00000023095 (Guinea pig)

Gene Details

Sp1 transcription factor

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000018716, Guinea pig)

Protein Percentage 95.47%
CDS Percentage 93.39%
Ka/Ks Ratio 0.15587 (Ka = 0.0288, Ks = 0.1846)

SP1 ENSG00000185591 (Human)

Gene Details

Sp1 transcription factor

External Links

Gene Match (Ensembl Protein ID: ENSP00000329357, Human)

Protein Percentage 96.88%
CDS Percentage 93.84%
Ka/Ks Ratio 0.09154 (Ka = 0.0175, Ks = 0.1915)

Sp1 ENSMUSG00000001280 (Mouse)

Gene Details

trans-acting transcription factor 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000001326, Mouse)

Protein Percentage 95.34%
CDS Percentage 90.78%
Ka/Ks Ratio 0.07225 (Ka = 0.0241, Ks = 0.3339)

Sp1 ENSRNOG00000014084 (Rat)

Gene Details

Sp1 transcription factor (Sp1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000019403, Rat)

Protein Percentage 96.05%
CDS Percentage 91.52%
Ka/Ks Ratio 0.06629 (Ka = 0.0204, Ks = 0.3082)

Genome Location

Sequence Coding sequence

Length: 2214 bp    Location: 1475759..1507464   Strand: +
Raw sequence   
>XM_004872747.1
ATGAGCGATCAGGATCACTCCATGGATGAAATGACAGCAGTAGTGAAGATTGAAAAAGGAGTTGGTGGCAATAATGGAAGCAGTGGTAATGGTGGTGGTGCCTTTTCTCAGACTCGAAGCAGCAGCACAGGCAGTACCAGTAGCGGTGGAGGAGGAGGAGGGCAGGGTGCCAATGGCTGGCAAATCATCTCTTCCTCCTCTGGGGCTACCCCTACCTCAAAGGAACAGAGTGGCAGCAGTACAAATGGCAGTAACGGCAGTGAGTCTTCCAAGAATCGCACAGTCTCTGGTGGGCAGTATGTTGTAGCTGCCACCCCCAACTTACAGAACCAACAAGTTCTGACAGGACTATCTGGAGTGATGCCTAACATTCAGTATCAAGTAATCCCACAGTTCCAGACCGTTGATGGGCAGCAGCTGCAATTTGCCGCCACTGGGGCTCAAGTGCAGCAGGATAGTTCTGGTCAAATACAGATCATACCAGGTGCAAACCAACAGATCATTACAAATCGAGGAAGTGGCGGCAACATCATTGCTGCTATGCCAAACCTACTTCAGCAGGCTGTCCCCCTCCAAGGCCTGGCTAATAATGTGCTCTCAGGACAGACTCAGTACGTGACCAATGTACCAGTGGCCCTGAATGGGAACATCACCTTGCTACCTGTCAACAGCGTTTCTGCAGCTACCTTGACTCCCAGCTCTCAGGCAGTCACGATTAGCAGCTCTGGGTCCCAAGAGAGTGGCTCACAGCCTGTCACTTCAGGAACGGCCAGTTCTGCCAGCTTGGTATCATCGCAACCCAGTTCCAGCTCCTTTTTCACCAATGCCAATAGCTACTCAACAACTACTACTACCAGCAACATGGGAATTATGAACTTTACCACCAGCGGATCATCAGGGACCAACTCCCAAGGCCAGACACCCCAGAGAGTGAGTGGGCTGCAGGGGTCTGATGCTCTGAACATCCAGCAGAACCAGACATCCGGAGGCTCACTGCAAGCAAGTCAGCAAAAAGAGGGAGAGCAAAACCAGCAGACACAACAACAAATTCTTATTCAGCCTCAGCTAGTTCAAGGGGGACAGGCTCTTCAGGCCCTGCAAACAGCACCATTGCCAGGGCAGAGCTTTACAACTCAAGCTATCTCCCAGGAAACCCTCCAGAACCTCCAGCTTCAGGCTGTTCCAAACTCTGGCCCCATCATCATCCGGACGCCAACAGTAGGGCCTAATGGACAGGTCAGTTGGCAGACTCTACAGCTGCAAAACCTCCAAGTTCAGAACCCTCAAGCCCAGACAATCACCTTGGCACCAATGCAGGGTGTTTCCTTGGGTCAGACCAGCAGTAGCAACACCACCCTTACACCTATTGCCTCAGCTGCCTCCATCCCTGCTGGCACAGTCACTGTGAATGCTGCTCAACTCTCCTCCATGCCAGGCCTTCAGACCATTAACCTCAGTGCATTGGGTACTCCAGGAATCCAGGTGCACCAGCTTCCAGGCCTGCCATTGGCGGCTATCGCAAATACCCCAGGTGATCATGGAGCTCAGCTTGGCCTCCATGGGGCAGGTGGTGATGGGATGCATGATGATACAGCAGGTGGAGAAGAAGGAGAGAACAGCCCAGATCCACAACCCCAGGCTGGTCGGAGGACCCGGCGGGAAGCATGCACCTGTCCCTACTGTAAAGACAGTGAAGGAAGGGGCTCTGGGGATCCTGGCAAAAAGAAGCAGCATATTTGCCACATCCAAGGCTGTGGCAAAGTGTATGGCAAGACCTCACATCTACGGGCACATTTGCGTTGGCATACAGGCGAGAGGCCATTCATGTGTACCTGGTCATACTGTGGGAAACGCTTCACACGTTCGGATGAGCTACAGAGACACAAGCGCACACACACAGGTGAGAAGAAGTTTGCCTGTCCTGAGTGTCCTAAGCGCTTCATGAGGAGTGATCACCTGTCAAAACATATCAAGACCCACCAGAATAAGAAGGGAGGCCCAGGTGTGGCCCTGAGTGTGGGCACTTTGCCCCTGGACAGTGGGGCAGGTTCAGAAGGCAGTGCCACTGCTACCCCTTCAGCTCTTATTACCACCAATATGGTAGCTATGGAGGCCATCTGTCCAGAGGGTATCGCTCGTCTTGCTAACAGTGGCATCAACGTCATGCAGGTGGCAGATCTGCAGTCCATTAATATCAGTGGCAATGGCTTCTGA

Related Sequences

XP_004872804.1 Protein

Sp1 PREDICTED: transcription factor Sp1 isoform X2 [Heterocephalus glaber]

Length: 737 aa      View alignments
>XP_004872804.1
MSDQDHSMDEMTAVVKIEKGVGGNNGSSGNGGGAFSQTRSSSTGSTSSGGGGGGQGANGWQIISSSSGATPTSKEQSGSSTNGSNGSESSKNRTVSGGQYVVAATPNLQNQQVLTGLSGVMPNIQYQVIPQFQTVDGQQLQFAATGAQVQQDSSGQIQIIPGANQQIITNRGSGGNIIAAMPNLLQQAVPLQGLANNVLSGQTQYVTNVPVALNGNITLLPVNSVSAATLTPSSQAVTISSSGSQESGSQPVTSGTASSASLVSSQPSSSSFFTNANSYSTTTTTSNMGIMNFTTSGSSGTNSQGQTPQRVSGLQGSDALNIQQNQTSGGSLQASQQKEGEQNQQTQQQILIQPQLVQGGQALQALQTAPLPGQSFTTQAISQETLQNLQLQAVPNSGPIIIRTPTVGPNGQVSWQTLQLQNLQVQNPQAQTITLAPMQGVSLGQTSSSNTTLTPIASAASIPAGTVTVNAAQLSSMPGLQTINLSALGTPGIQVHQLPGLPLAAIANTPGDHGAQLGLHGAGGDGMHDDTAGGEEGENSPDPQPQAGRRTRREACTCPYCKDSEGRGSGDPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGERPFMCTWSYCGKRFTRSDELQRHKRTHTGEKKFACPECPKRFMRSDHLSKHIKTHQNKKGGPGVALSVGTLPLDSGAGSEGSATATPSALITTNMVAMEAICPEGIARLANSGINVMQVADLQSINISGNGF