Sequence details NCBI ID: XM_004872520.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Syde1
Gene Name synapse defective 1, Rho GTPase, homolog 1 (C. elegans)
Entrez Gene ID 101721858

Database interlinks

Part of NW_004624901.1 (Scaffold)

For more information consult the page for NW_004624901.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SYDE1 ENSCPOG00000027188 (Guinea pig)

Gene Details

synapse defective 1, Rho GTPase, homolog 1 (C. elegans)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000015999, Guinea pig)

Protein Percentage 85.99%
CDS Percentage 85.9%
Ka/Ks Ratio 0.19347 (Ka = 0.0846, Ks = 0.4372)

SYDE1 ENSG00000105137 (Human)

Gene Details

synapse defective 1, Rho GTPase, homolog 1 (C. elegans)

External Links

Gene Match (Ensembl Protein ID: ENSP00000341489, Human)

Protein Percentage 87.59%
CDS Percentage 86.68%
Ka/Ks Ratio 0.13459 (Ka = 0.0648, Ks = 0.4816)

Syde1 ENSMUSG00000032714 (Mouse)

Gene Details

synapse defective 1, Rho GTPase, homolog 1 (C. elegans)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000043085, Mouse)

Protein Percentage 85.54%
CDS Percentage 82.63%
Ka/Ks Ratio 0.12084 (Ka = 0.0797, Ks = 0.6597)

Syde1 ENSRNOG00000007307 (Rat)

Gene Details

synapse defective 1, Rho GTPase, homolog 1 (C. elegans) (Syde1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000009606, Rat)

Protein Percentage 85.54%
CDS Percentage 82.63%
Ka/Ks Ratio 0.11785 (Ka = 0.0794, Ks = 0.674)

Genome Location

Sequence Coding sequence

Length: 2211 bp    Location: 2191241..2197881   Strand: +
Raw sequence   
>XM_004872520.1
ATGGCCGAGCCGCTACTGCGGAAAACCTTCTCCCGCCTCCGGGGCCGGGAGAAACTTCCGCGGAAAAAGTCAGACGCCAAGGAGCGTGGCCGCCCAGCCCAGCACCCAGAGCCCAGCCCGCCAGAACCCCAGGCCCTTGAAGGGCCCCAGGCAGGAGCAGAGGGACCCCTCAGGCCGGAGGCACCTCGGAGCCCTGCCCGGGGGGTGTACCTGCAAAGCCTGGAGCCCAGCAGCCGAAGATGGGTGCTGGGAGGGGCCAAGCCACCTGAGGAGGTGCCTCTGGGGCCAGGGATACCTAGCAGTGGGGAGCCCGCTGGCGAGATCTGGTACAACCCCATCCCAGAGGAAGACCCCAGACCCCCAGCACCTGAGCCACTGTGGCCACAGCCAGGCTCTGCTGAGCCAGAGAACCCAACCCACCAAGGTGCAGCCCCCGCCAGCCCCCCAACCAAAACCTCCCGAACCAAGTCCCCGGGCCCTGCCAGGCGCCTCTCTATGAAGATGAAGAAGCTGCCCGAGCTGCGGCGCCGCCTGAGCCTGCGGGGGCCCAAGGCTGGCCGGGAGCGCGAGAGGGCTGCCCCAGAGGGCTCTGTCATCACCCGCTACCACCTGGACAGCAGTGTGGGGAACCCCCGGCGGATGGCAGCTGCTGGGAGCACTCAGAGCGCCAGGGCTGTGTACCTTAGTGATAGCGATTCCCCCGAGCGCCCGGCAGGCCCCCCATCGCCTGCTGCCTTTCGGCCCTATGAAGCAGGCCCAGCGGCCCGGGTGCTGCCAGCTGCACTCTGGGGCCGCCTCAGCCTGCACCTATACGGGCTCGGGGGACTGCGGCCAACACCAGGGGCCACCCCGAGAGACCTCTGCTGCCTGCTCCAAGTGGATGGGGTGGCGAGAGCCCGCACAGGACCCCTTCGAGGAGGGCCGGACTTCCTACAGCTGGACCACACCTTCCACCTGGAGCTGGAGGCCGCCCGGCTACTGCGGGCCCTGGTGCTTGCTTGGGACCCTGGCGTGAGGCGGCACCGGCCCTGTGCCCAGGGGACTGTGCTGCTGCCCACAGTCTTCCGAGGCTGCCAGGCCCAGCAGCTGGCCATCCGCCTGGAACCCCAGGGGCTGCTGTATGCCAAGCTGACCCTGTCGGACCAGCAAGAAGCATCCGCCACAGCTGAGCCCCGTGTCTTTGGGCTGCCCCTGCCACTGCTGGTAGAGCGGGAGCAGCCCCCAGGCCAGGTGCCTCACATCATCCAGAAGTGTGTTGCACAGATTGAGCGCCGAGGGCTGCGGGTAGTGGGCTTGTACCGTCTGTGCGGCTCCGCAGCAGTGAAGAAAGAGCTTCGGGATGCCTTTGAGCGGGATAGTGAGGCTGTCTGCCTCTCTGAGGACTTATACCCTGATATCAACGTCATCACAGGCATCCTCAAGGATTACCTTCGAGAGTTGCCCACCCCACTCATCACCCAGCCCCTTTATCAGGTGGTCCTGGAGGCCATGGCCCGAGGCCCCCCAAGCAGAATTCCTCCAAGTCCTGAGGGCACCCGAGGGCTCCTCAGCTGCCTGCCAGATGTGGAAAAGGCCACGTTGACGCTTCTCCTGGACCACCTGCGCCTCGTCTCCTCCTTCCAGGCTCACAACCGCATGACCCCACAGAATTTGGCCGTGTGCTTCGGGCCCGTGCTGCTGCCGGCGCGCCAGGCATCCGCCCGGCCCCGCATCCGCAGTTGTGGCACAGGCGTCACCAGCGCGGTGGACTTCAAGCGCCACATCGAAGTGTTACACTACCTGCTGCAGTCTTGGCCAGATCCCCGGCAGTCCCCAGAGGCTCCAGATGTCGCACCGTACTTGCGGCCCAAACGACAGCCGTCCCTGCACTTGCCGCTAACAGGCCCTGAGGTGGTGACTCGGCCCCGCGGCCGCGGAGGCCCGGAGAGCCCCCCAAGCAACCGTTACGCTGGCGAGTGGAGCGTTTGCGGGCGGGACTTCCTGCCATGTGGACGGGACTTCCTGTCCGGGCCTGCCTATGACCACGTGACGGGCAGCCACAGCGATGAGGATGACGATGACGACGACGAGGCGGGTGAGCAAAGAGGCGCTGCCGACTTCGAAGATGAGTTTGATGCGCCCTTCAATCCGCACCTGAATCTCAAAGATTTTGACGCCCTCATCCTGGACCTGGAGAGAGAGCTCTCTAAGCAATTAAACGTGTGCCTCTGA

Related Sequences

XP_004872577.1 Protein

Syde1 PREDICTED: rho GTPase-activating protein SYDE1 [Heterocephalus glaber]

Length: 736 aa      View alignments
>XP_004872577.1
MAEPLLRKTFSRLRGREKLPRKKSDAKERGRPAQHPEPSPPEPQALEGPQAGAEGPLRPEAPRSPARGVYLQSLEPSSRRWVLGGAKPPEEVPLGPGIPSSGEPAGEIWYNPIPEEDPRPPAPEPLWPQPGSAEPENPTHQGAAPASPPTKTSRTKSPGPARRLSMKMKKLPELRRRLSLRGPKAGRERERAAPEGSVITRYHLDSSVGNPRRMAAAGSTQSARAVYLSDSDSPERPAGPPSPAAFRPYEAGPAARVLPAALWGRLSLHLYGLGGLRPTPGATPRDLCCLLQVDGVARARTGPLRGGPDFLQLDHTFHLELEAARLLRALVLAWDPGVRRHRPCAQGTVLLPTVFRGCQAQQLAIRLEPQGLLYAKLTLSDQQEASATAEPRVFGLPLPLLVEREQPPGQVPHIIQKCVAQIERRGLRVVGLYRLCGSAAVKKELRDAFERDSEAVCLSEDLYPDINVITGILKDYLRELPTPLITQPLYQVVLEAMARGPPSRIPPSPEGTRGLLSCLPDVEKATLTLLLDHLRLVSSFQAHNRMTPQNLAVCFGPVLLPARQASARPRIRSCGTGVTSAVDFKRHIEVLHYLLQSWPDPRQSPEAPDVAPYLRPKRQPSLHLPLTGPEVVTRPRGRGGPESPPSNRYAGEWSVCGRDFLPCGRDFLSGPAYDHVTGSHSDEDDDDDDEAGEQRGAADFEDEFDAPFNPHLNLKDFDALILDLERELSKQLNVCL