Sequence details NCBI ID: XM_004872353.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Plxna1
Gene Name plexin A1, transcript variant X4
Entrez Gene ID 101699724

Database interlinks

Part of NW_004624900.1 (Scaffold)

For more information consult the page for NW_004624900.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PLXNA1 ENSCPOG00000014801 (Guinea pig)

Gene Details

plexin A1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000013337, Guinea pig)

Protein Percentage 98.2%
CDS Percentage 90.97%
Ka/Ks Ratio 0.01419 (Ka = 0.0095, Ks = 0.6716)

PLXNA1 ENSG00000114554 (Human)

Gene Details

plexin A1

External Links

Gene Match (Ensembl Protein ID: ENSP00000377061, Human)

Protein Percentage 96.24%
CDS Percentage 90.08%
Ka/Ks Ratio 0.02303 (Ka = 0.0192, Ks = 0.8335)

Plxna1 ENSMUSG00000030084 (Mouse)

Gene Details

plexin A1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000131840, Mouse)

Protein Percentage 95.87%
CDS Percentage 87.67%
Ka/Ks Ratio 0.02285 (Ka = 0.0213, Ks = 0.9335)

RGD1560871 ENSRNOG00000017003 (Rat)

Gene Details

Protein RGD1560871

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000022951, Rat)

Protein Percentage 95.82%
CDS Percentage 87.45%
Ka/Ks Ratio 0.02367 (Ka = 0.0219, Ks = 0.9266)

Genome Location

Sequence Coding sequence

Length: 5733 bp    Location: 2784106..2825251   Strand: +
Raw sequence   
>XM_004872353.1
ATGCCTAGCCCTGCAGGACCTGAGCTCCGAGGCACCAGGCGCTGGCCCGCCATGCCACTGCCACCTCTGAGCCTGTGTGTGTTCCCCATGCTGCTGCTCCTGCTCCTGGGTGGCGTGCATGCTGCCATGGGTTCACCCAGGGCTGGCGGGGGTCCACACCCTGCCTTCCGCACCTTCGTGGCCAGCGACTGGGGCCTCACCCACCTGGTGGTCCATGAGCAGACAGGCGAGGTGTACGTGGGGGCCGTGAACCGCATCTACAAGCTGTCTGGGAACCTGACGCTGCTGCGGGCCCACGTGACAGGCCCTGTGGAGGACAACGAGAAGTGCTACCCGCCCCCCAGTGTGCAGTCATGCCCACATGGCCTGGGCAGCACCGACAACGTCAATAAGCTGCTGCTGCTGGATTATGCCGCCAACCGCCTACTGGCCTGCGGCAGCGCCTCCCAGGGCATCTGCCAGTTCCTGCGGCTGGACGACCTCTTCAAGCTGGGCGAGCCGCACCACCGCAAGGAGCACTACCTGTCGAGCGTGCGTGAGGCTGGTAGCATGGCAGGTGTGCTCATCGCTGGGCCACTGGGTCAGGGCCAGGCCAAGCTCTTTGTGGGCACACCCATCGATGGCAAGTCCGAGTACTTCCCCACACTGTCCAGCCGCCGGCTCATGGCCAACGAGGAGGATGCTGACATGTTCGGCTTCGTGTACCAGGATGAGTTTGTGTCCTCACAGCTGAAGATCCCATCAGACACGCTGTCCAAGTTCCCAGCCTTCGACATCTACTATGTGTACAGCTTCCGCAGCGAGCAGTTCGTCTACTACCTCACCCTGCAGCTGGATACGCAGCTGACCTCGCCCGACGCTGCAGGCGAGCACTTCTTCACCTCCAAGATCGTGCGGCTGTGCGTGGATGACCCCAAGTTCTACTCCTACGTGGAGTTCCCCATCGGCTGCGAGCAGGCCGGTGTGGAGTACCGCCTGGTGCAGGACGCCTACCTCAGCCGGCCCGGCCAGACCCTGGCCCGCCAGCTGGGCCTGGCCAAGGATGAGGATGTGCTGTTCACCGTGTTCGCCCAGGGCCAGAAGAACCGTGTGAAGCCGCCCAAAGAGTCGGCGCTGTGCTTGTTCACCCTCAGGGCCATCAAGGAGAAGATCAAGGAGCGCATCCAGTCCTGCTACCGTGGCGAGGGCAAGCTCTCTCTGCCCTGGCTGCTCAACAAGGAGCTAGGCTGTATCAACTCGCCCCTGCAGATCGATGATGACTTCTGCGGACAGGACTTCAACCAGCCGCTGGGGGGCACAGTCACCATTGAGGGCACACCTCTGTTTGTGGACAAGGATGATGGCCTGACCGCTGTAGCTGCCTACGACTACCGGGGCCGCACCGTGGTGTTTGCCGGCACGAGGAGCGGCCGCATCCGCAAGGTCAGGCCCCAGTGGGGAGGTAGGAGGGGTGAACAGGACGTGGTTGTCCAAGAGGGCAGCCCTATCCTGCGTGACCTGGTCCTCAGCCCTAACCACCAGTACCTCTATGCCATGACGGAGAAGCAGGTGACACAGGTGCCGGTGGAGAGTTGCGTGCAGTACACATCGTGCGAGCTATGCCTGGGGTCCAGGGACCCCCACTGTGGCTGGTGTGTCCTGCACAGCATCTGCTCACGGCAGGATGCGTGTGAGCGGGCAGATGAGCCCCAGCGCTTCGCCTCTGACCTGCTGCAGTGCGTCCAGCTGACTGTGCAGCCGCACAATGTGTCGGTCACCATGTCCCAGGTGCCGGTGAGTCTTGTGCTGCAGGCCTGGAACGTTCCTGACCTCTCAGCTGGCGTCAACTGCTCCTTCGAGGACTTCACAGAATCCGAGGGCGTCCTAGAGGATGGCCGCATCCACTGCCGCTCGCCCTCTGCTCGGGAGGTGGCACCCATCACTCGGGGCCAGGGGGACCAGCGGGTGGTGAAGTTATACCTGAAGTCCAAGGAGACTGGGAAGAAGTTTGCATCTGTGGACTTTGTCTTCTACAATTGCAGTGTCCACCAGTCCTGCTTGTCCTGTGTCAATGGCTCCTTCCCCTGTCACTGGTGCAAATACCGCCACGTGTGCACGCACAACGCCGCTGATTGCGCCTTTCTGGAGGGCCGTGTCAACGTGTCTGAGGACTGCCCCCAGATCCTACCCTCCACCCAGATCTATGTGCCAGTGGGCGTGGTGAAGCCCATCACCCTGGCTGCCCGGAACCTGCCGCAGCCACAGTCAGGCCAGCGTGGGTATGAGTGCCTTTTCCACATCCCAGGCAGCCCTGCCCGTGTCACTGCCCTGCGCTTCAACAGCTCCAGCCTGCAGTGCCAGAACTCCTCGTACTCCTACGAGGGCAACGACATCAGTGACCTGCCCGTGAACCTGTCGGTCGTGTGGAACGGCAACTTTGTCATCGACAACCCCCAGAACATCCAGGCCCACCTCTACAAGTGCCCTGCGCAGCGGGAGAGCTGTGGCCTCTGCCTCAAGGCCGACCCGCGCTTTGAGTGCGGCTGGTGCGTGGCTGAGCGCCGCTGCTCCCTACGCCACCACTGCCCATATGATGCACCTGCCGCCTGGATGCATGCCCGCCACGGCAGCAGCCGCTGCACGGACCCCAAGATCCTCAAGCTGTCCCCGGAGACAGGCCCCCGGCAGGGAGGGACGCGGCTCACCATCACCGGCGAGAACTTGGGCCTGCGGTTCGAGGACGTGCGACTGGGCGTACGGGTGGGCAAGGTGCTCTGCAGCCCCGTAGAGAGCGAATACATCAGCGCCGAGCAGATCGTCTGCGAGATTGGGGACGCCAGCTCGGTGCGGGCCCATGACGCCCTGGTGGAGGTGTGTGTGCGGGACTGCTCGCCCCACTACCGGGCCCTGTCTCCCAAGCGCTTCACTTTCGTGACACCAACCTTCTACCGCGTGAGCCCCTCCCGCGGGCCTCTGTCCGGGGGCACTTGGATTGGCATCGAGGGGAGTCACCTGAATGCGGGCAGTGACGTGGCCGTGTCCATCGGTGGCCGGCCCTGCTCCTTCTCCTGGTACGGGAGGAACTCCCGGGAGATCCGATGCCTGACACCCCCTGGGCAGAGCCCAGGGAGTGCCCCCATCTTCATTAACATCAACCGTGCCCAGCTCGCCAACCCTGATGTGAAATACAATTACACGGAGGACCCCACCATCCTGAAGATCGACCCAGAGTGGAGCATCAACAGTGGTGGGACCCTCCTCACTGTCACGGGTACCAATCTGGCCACTGTCCGTGAGCCCCGAATCCGAGCCAAGTATGGAGGCGTCGAGCGGGAAAACAGCTGCATGGTGTACAATGACACCACTATGGTGTGCCGGGCGCCATCTGTGGACAACCCCACGCGCACGCCGCCGGAGCTGGGGGAGCGGCCAGACGAGCTGGGCTTCATCATGGACAACGTGCGCGCCCTGCTGGTGCTCAACTCCTCCTCCTTCCTCTACTACCCTGACCCTGTGCTGGAGCCCCTCAGCCCTACTGGGCTCCTGGAGCTGAAGCCCAGCTCCCCACTCATCCTCAAGGGCCGGAACCTCCTGCCACCTGCACCTGGCAACTCCCGGCTCAACTATACAGTGCTCATCGGCTCCACGCCGTGCATCCTCACTGTGTCAGAGACGCAGCTGCTGTGTGAGTCACCCAACCTCACTGGGCAGCACAAGGTCACGGTGCGGGCAGGCGGCTTCGAGTTCTCGCCGGGCATGCTGCAGGTATACTCAGACAGCCTGCTGACGCTGCCTGCCATTGTGGGCATCGGTGGGGGCGGGGGCCTGCTGCTGCTGGTCATCGTGGCCGTGCTTATCGCCTACAAGCGAAAGTCCCGTGACGCTGACCGCACCCTCAAGCGGCTGCAGCTCCAGATGGACAACCTGGAGTCCCGTGTGGCCCTCGAGTGCAAGGAAGCCTTTGCAGAGCTGCAGACAGACATCCATGAGCTGACCAACGACCTGGACGGTGCGGGTATCCCATTTCTTGACTATCGCACCTATGCCATGCGGGTGCTCTTCCCCGGGATCGAGGACCACCCTGTGCTCAAGGAGATGGAGGTGCAGGCCAACGTGGAGAAGTCCTTGACGCTGTTTGGGCAGCTGCTGACCAAGAAGCATTTCCTGCTGACCTTCATCCGCACACTGGAAGCCCAGCGCAGCTTCTCCATGCGAGACCGTGGCAACGTGGCCTCCCTCATCATGACAGCCCTGCAGGGGGAGATGGAGTACGCCACGGGTGTGCTCAAGCAGCTGCTGTCTGACCTCATTGAGAAGAACCTGGAGAGCAAGAACCACCCCAAGCTGCTGCTGCGCCGGACTGAATCGGTGGCTGAGAAGATGCTGACCAACTGGTTCACCTTCCTCCTGTATAAGTTCCTCAAGGAGTGCGCAGGGGAGCCCCTCTTCATGCTGTACTGCGCCATCAAGCAGCAGATGGAGAAGGGCCCCATCGATGCCATCACGGGTGAGGCCCGCTACTCCCTGAGTGAGGACAAGCTCATCCGACAGCAGATTGACTACAAGACGCTGACCCTGAACTGCGTGAACCCCGAGAATGAGAATGCACCCGAGGTGCCAGTGAAGGGGCTGAACTGCGACACAGTGACACAGGTCAAGGAGAAGCTGCTGGATGCCGTGTATAAGGGAGTACCCTACTCCCAGCGGCCCAAGGCTGGGGACATGGACCTCGAGTGGCGCCAGGGCCGCATGGCGCGCATCATCCTGCAGGATGAGGATGTCACCACCAAGATTGACAACGACTGGAAGAGACTGAACACTCTGGCCCACTACCAGGTGACAGATGGGTCATCAGTGGCACTGGTGCCCAAGCAGACGTCCGCCTACAACATTTCCAACTCCTCCACCTTCACCAAGTCCCTCAGCAGATACGAGAGCATGCTACGTACAGCCAGCAGCCCTGACAGCCTGCGCTCGCGCACCCCCATGATCACACCCGACCTGGAGAGTGGCACCAAGCTGTGGCACCTAGTGAAGAACCATGACCACCTGGACCAGCGCGAAGGTGACCGAGGTAGCAAAATGGTCTCAGAAATCTACTTGACCCGGCTGCTGGCCACCAAGGGCACACTGCAGAAGTTCGTGGACGACCTGTTTGAGACCATCTTCAGCACAGCACACCGGGGCTCGGCCCTGCCGCTGGCCATCAAGTACATGTTTGACTTCTTAGACGAACAGGCTGACAAGCACCAGATCCATGATGCCGACGTGCGCCATACCTGGAAGAGCAACTGCCTGCCCCTGCGCTTCTGGGTGAACGTGATCAAGAACCCGCAGTTCGTGTTCGACATCCACAAGAACAGCATCACGGACGCCTGCCTGTCAGTTGTGGCCCAGACCTTCATGGACTCCTGCTCCACGTCGGAACACAAGCTGGGCAAGGACTCGCCCTCCAACAAGCTGCTCTATGCCAAGGACATCCCCAACTACAAGAGCTGGGTGGAGAGATACTATGCTGACATCGCCAAGATGCCTGCCATCAGTGACCAGGACATGAGTGCCTACCTGGCCGAGCAGTCCCGGCTGCACCTGAGCCAGTTCAACAGCATGAGCGCCCTGCACGAGATCTACTCCTACATCACCAAGTACAAGGATGAGATCCTGGGAGCACTGGAGAAGGATGAGCAGGCACGGCGGCAGCGGCTGCGCAGCAAGCTGGAGCAGGTGGTGGACACGATGGCCCTGAGCAGCTGA

Related Sequences

XP_004872410.1 Protein

Plxna1 PREDICTED: plexin-A1-like isoform X4 [Heterocephalus glaber]

Length: 1910 aa      View alignments
>XP_004872410.1
MPSPAGPELRGTRRWPAMPLPPLSLCVFPMLLLLLLGGVHAAMGSPRAGGGPHPAFRTFVASDWGLTHLVVHEQTGEVYVGAVNRIYKLSGNLTLLRAHVTGPVEDNEKCYPPPSVQSCPHGLGSTDNVNKLLLLDYAANRLLACGSASQGICQFLRLDDLFKLGEPHHRKEHYLSSVREAGSMAGVLIAGPLGQGQAKLFVGTPIDGKSEYFPTLSSRRLMANEEDADMFGFVYQDEFVSSQLKIPSDTLSKFPAFDIYYVYSFRSEQFVYYLTLQLDTQLTSPDAAGEHFFTSKIVRLCVDDPKFYSYVEFPIGCEQAGVEYRLVQDAYLSRPGQTLARQLGLAKDEDVLFTVFAQGQKNRVKPPKESALCLFTLRAIKEKIKERIQSCYRGEGKLSLPWLLNKELGCINSPLQIDDDFCGQDFNQPLGGTVTIEGTPLFVDKDDGLTAVAAYDYRGRTVVFAGTRSGRIRKVRPQWGGRRGEQDVVVQEGSPILRDLVLSPNHQYLYAMTEKQVTQVPVESCVQYTSCELCLGSRDPHCGWCVLHSICSRQDACERADEPQRFASDLLQCVQLTVQPHNVSVTMSQVPVSLVLQAWNVPDLSAGVNCSFEDFTESEGVLEDGRIHCRSPSAREVAPITRGQGDQRVVKLYLKSKETGKKFASVDFVFYNCSVHQSCLSCVNGSFPCHWCKYRHVCTHNAADCAFLEGRVNVSEDCPQILPSTQIYVPVGVVKPITLAARNLPQPQSGQRGYECLFHIPGSPARVTALRFNSSSLQCQNSSYSYEGNDISDLPVNLSVVWNGNFVIDNPQNIQAHLYKCPAQRESCGLCLKADPRFECGWCVAERRCSLRHHCPYDAPAAWMHARHGSSRCTDPKILKLSPETGPRQGGTRLTITGENLGLRFEDVRLGVRVGKVLCSPVESEYISAEQIVCEIGDASSVRAHDALVEVCVRDCSPHYRALSPKRFTFVTPTFYRVSPSRGPLSGGTWIGIEGSHLNAGSDVAVSIGGRPCSFSWYGRNSREIRCLTPPGQSPGSAPIFININRAQLANPDVKYNYTEDPTILKIDPEWSINSGGTLLTVTGTNLATVREPRIRAKYGGVERENSCMVYNDTTMVCRAPSVDNPTRTPPELGERPDELGFIMDNVRALLVLNSSSFLYYPDPVLEPLSPTGLLELKPSSPLILKGRNLLPPAPGNSRLNYTVLIGSTPCILTVSETQLLCESPNLTGQHKVTVRAGGFEFSPGMLQVYSDSLLTLPAIVGIGGGGGLLLLVIVAVLIAYKRKSRDADRTLKRLQLQMDNLESRVALECKEAFAELQTDIHELTNDLDGAGIPFLDYRTYAMRVLFPGIEDHPVLKEMEVQANVEKSLTLFGQLLTKKHFLLTFIRTLEAQRSFSMRDRGNVASLIMTALQGEMEYATGVLKQLLSDLIEKNLESKNHPKLLLRRTESVAEKMLTNWFTFLLYKFLKECAGEPLFMLYCAIKQQMEKGPIDAITGEARYSLSEDKLIRQQIDYKTLTLNCVNPENENAPEVPVKGLNCDTVTQVKEKLLDAVYKGVPYSQRPKAGDMDLEWRQGRMARIILQDEDVTTKIDNDWKRLNTLAHYQVTDGSSVALVPKQTSAYNISNSSTFTKSLSRYESMLRTASSPDSLRSRTPMITPDLESGTKLWHLVKNHDHLDQREGDRGSKMVSEIYLTRLLATKGTLQKFVDDLFETIFSTAHRGSALPLAIKYMFDFLDEQADKHQIHDADVRHTWKSNCLPLRFWVNVIKNPQFVFDIHKNSITDACLSVVAQTFMDSCSTSEHKLGKDSPSNKLLYAKDIPNYKSWVERYYADIAKMPAISDQDMSAYLAEQSRLHLSQFNSMSALHEIYSYITKYKDEILGALEKDEQARRQRLRSKLEQVVDTMALSS