Sequence details NCBI ID: XM_004872303.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Col5a2
Gene Name collagen, type V, alpha 2
Entrez Gene ID 101706649

Database interlinks

Part of NW_004624899.1 (Scaffold)

For more information consult the page for NW_004624899.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

COL5A2 ENSCPOG00000006858 (Guinea pig)

Gene Details

collagen, type V, alpha 2

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000006182, Guinea pig)

Protein Percentage 94.73%
CDS Percentage 90.22%
Ka/Ks Ratio 0.11695 (Ka = 0.0351, Ks = 0.2998)

COL5A2 ENSG00000204262 (Human)

Gene Details

collagen, type V, alpha 2

External Links

Gene Match (Ensembl Protein ID: ENSP00000364000, Human)

Protein Percentage 95.13%
CDS Percentage 89.66%
Ka/Ks Ratio 0.07194 (Ka = 0.0275, Ks = 0.3828)

Col5a2 ENSMUSG00000026042 (Mouse)

Gene Details

collagen, type V, alpha 2

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000083620, Mouse)

Protein Percentage 94.79%
CDS Percentage 88.07%
Ka/Ks Ratio 0.06194 (Ka = 0.0303, Ks = 0.4895)

Col5a2 ENSRNOG00000003736 (Rat)

Gene Details

collagen, type V, alpha 2 precursor

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000005073, Rat)

Protein Percentage 91.67%
CDS Percentage 85.53%
Ka/Ks Ratio 0.10179 (Ka = 0.0564, Ks = 0.5541)

Genome Location

Sequence Coding sequence

Length: 4500 bp    Location: 1035796..1174433   Strand: +
Raw sequence   
>XM_004872303.1
ATGATGGCAAACTGGGTAGAAGCAAGACCTCTCCTCATTCTTACTGTTTTATTAGGGCAATCTGTCTCAATAAAAGCCCAGGACGAAGGCGAGGATGATGAGTATACTGAAGAAATAGCCTGCACTCAGAATGGCCAGATGTACTTAAACAGGGACATTTGGAAACCTAGTGCATGCCAGATCTGTGTCTGTGATAATGGAGCCATTCTTTGTGACAAGATACAGTGTCAGGAAGTGCTGAACTGTGCTGACCCCGTGACCCCTCCCGGAGAGTGCTGCCCTGTCTGTCCGCAAACACCTGGAAGTGGAAATACCAATTTTGGTAGAGGAAGAAAGGGACAAAAAGGAGAACCAGGATTAGTACCTGTCGTAACGGGCATTCGCGGTCGTCCAGGGCCAGCCGGTCCTCCAGGGTCACAGGGACCAAGAGGAGATCGCGGCCCCAAAGGAAGACCGGGTCCTCGTGGTCCTCAGGGAATTGATGGAGAACCAGGTATTCCTGGCCAGCCTGGTTCTCCGGGACCTCCTGGACATCCTTCTCACCCAGGACCCGATGGCATGAGCAGGCCATTTTCAGCTCAGATGGCCGGGTTGGATGAGAAATCTGGACTTGGGAGTCAAGTAGGATTCATGCCTGGCTCTGTGGGTCCTGTAGGCCCAAGGGGACCTCAAGGTTTACAAGGGCAGCAAGGTGGCGTAGGACCAGCAGGACCTCCTGGTGAACCTGGTGAACCCGGACAAATGGGTCCAATTGGTGCTCGTGGACCCGAGGGCCCCCCTGGGAAGCCAGGTGAAGATGGTGAAGCTGGTAGGAATGGAAACTCCGGTGAAGTGGGATTTTCAGGATCACCTGGAGCTCGAGGTTTCCCTGGGGCTCCTGGTCTTCCAGGCCTGAAGGGTCACAGGGGACACAAAGGGCTTGATGGACCAAAAGGTGAAATTGGAGCACCTGGCGCCAAGGGTGAAGCTGGCCCTACTGGTCCAATGGGTGCTATGGGTCCACTGGGTCCAAGAGGAATGCCAGGAGAAAGAGGGAGACTTGGGCCACAGGGTGCTCCTGGACAGCGAGGTGCACATGGTATGCCTGGAAAGCCTGGACCAATGGGTCCTCTTGGGATTTCTGGCTCTCCTGGTTTTCCAGGAAATCCTGGAATGAAAGGAGAAGCAGGTCCTACGGGGGCTCGAGGTCCGGAAGGTCCTCAGGGCCAGCGAGGTGAAACTGGGCCGCCAGGTCCAGCTGGCTCTCAAGGGCTTCCTGGTGCTATGGGAACTGATGGTACACCTGGTGCCAAAGGTCCCACAGGCTCGGCGGGTACTTCTGGTCCTCCTGGCTTGTTAGGGCCCCCGGGATCTCCCGGCCCTCAGGGTAGCACTGGACCTCAGGGAATTCGAGGACAACCGGGTGATCCAGGAGTTCCAGGTTTCAAAGGAGAAGCTGGCCCCAAGGGGGAACCAGGGCCACATGGTGTGCAGGGTCCAATTGGCCCCCCTGGTGAAGAAGGCAAAAGAGGTCCTCGAGGTGACCCAGGGACAGTTGGTCCTCCGGGCCCACTGGGAGAAAGGGGTGCTCCTGGCAATCGTGGTTTTCCAGGTTCTGACGGTTTACCTGGACCAAAGGGTGCCCAAGGAGAGCGTGGCCCTGTTGGTTCTTCAGGACCTAAGGGAGGCCAGGGAGACCCAGGACGTCCAGGTGAACCTGGCCTTCCTGGTGCTCGGGGTCTGACAGGAAATCCAGGTGTTCAAGGCCCTGAAGGAAAACTGGGACCTTTGGGTGCTCCAGGGGAAGATGGCCGCCCGGGTCCTCCGGGCTCCGTAGGCATCAGAGGGCAGCCTGGGAGCATGGGTCTTCCAGGCCCCAAAGGGAGCAGTGGTGATCCTGGAAAACCCGGAGAAGCAGGAAATGCTGGTGTTCCTGGGCAGAGGGGAGCTCCTGGAAAAGATGGAGAAGTTGGTCCCTCTGGTCCTGTCGGGCCCCCGGGTCTCGCTGGGGAAAGAGGAGAACAGGGACCTCCGGGGCCCACTGGCTTTCAGGGGCTCCCTGGGCCTCCAGGACCTCCTGGGGAAGGTGGAAAGCCAGGAGATCAAGGTGTTCCTGGAGACCCTGGAGCTGTTGGCCCCTTAGGACCTCGAGGAGAAAGAGGAAATCCTGGAGAGAGAGGAGAACCGGGAATAACGGGGCTCCCGGGTGAGAAGGGCATGGCTGGAGGACATGGGCCCGATGGCCCAAAGGGCAGTCCTGGTCCAACTGGGACAGTGGGAGACACAGGGCCCCCAGGTCTCCAAGGCATGCCAGGAGAGAGAGGAATTGCCGGAACTCCGGGTCCCAAGGGTGACAGAGGCGGCATAGGAGAGAAAGGTGCTGAGGGTACAGCTGGAAATGATGGAGCAAGAGGTCTTCCAGGTCCCTTGGGTCCTCCTGGTCCTGCAGGTCCTACTGGAGAAAAGGGTGAACCTGGTCCTCGAGGTTTAGTTGGCCCCCCTGGCTCCCGTGGCAATCCTGGTTCTCGTGGTGAAAATGGCCCAACTGGGGCTGTTGGTTTTGCTGGACCCCAGGGTCCGGATGGGCAGCCTGGAGTAAAGGGTGAGCCTGGAGAGCCAGGTCAGAAGGGGGATGCTGGGTCTCCTGGACCACAAGGGCTAGCAGGATCCCCTGGTCCCCATGGTCCTATGGGTGTTCCTGGATTAAAAGGTGGTCGAGGAACCCAGGGTCCACCTGGTGCTACTGGATTTCCTGGTTCTGCTGGTAGAGTTGGACCCCCAGGCCCTGCTGGAGCTCCAGGACCTGCTGGGCCCATTGGGGAGCCCGGGAAGGAGGGACCTCCAGGTCTTCGTGGGGACCCTGGCTCTCATGGGCGAGTGGGAGATCGAGGACCGGCTGGCCCCCCTGGTGGCCCAGGAGACAAAGGAGACCCAGGAGAAGATGGGCAGCCTGGGCCAGATGGTCCCCCCGGTCCAGCTGGAACTACTGGGCAGAGAGGGGTCGTCGGCATGCCTGGACAGCGAGGTGAGCGAGGCATGCCTGGCCTACCGGGCCAAGCGGGCACACCAGGAAAAGTAGGACCAACTGGTGCAACAGGAGACAAAGGTCCCCCTGGACCTGTGGGCCCCCCAGGCTCCAATGGTCCTGTAGGGGAACCTGGACCAGAAGGTCCCGCTGGGAATGATGGTACTCCAGGCCGGGATGGTGCTGTTGGAGAACGAGGTGATCGTGGAGATCCTGGGCCTGCAGGTCTGCCGGGCTCTTCGGGTGCCCCCGGGACCCCTGGCCCTGTGGGTGCACCAGGAGATGCAGGACAAAGAGGAGATCCGGGTTCTCGAGGTCCTATAGGGCCACCTGGTCGAGCTGGAAAACGTGGTTTACCTGGCCCTCAAGGACCTCGTGGGGACAAAGGTGACAATGGAGACAGGGGTGACCGAGGTCAGAAGGGCCACCGAGGCTTCACCGGTCTCCAGGGGCTTCCTGGGCCTCCTGGTCCAAATGGTGAACAAGGCAGTCCTGGAATCCCTGGTCCATTTGGTCCAAGAGGTCCTCCAGGCCCAGTTGGCCCATCAGGGAAAGAAGGAAACCCTGGTCCGCATGGGCCAGTTGGACCTCCTGGTGTCCGGGGCAGTGTAGGAGAGGCAGGACCAGAGGGTCCTCCTGGAGAGCCTGGTCCACCTGGCCCTCCAGGTCCCCCTGGCCACCTCACAGCTGCCCTTGGTGATATCATGGGCCACTACGATGAGAGCATGGCAGACCCACTTCCAGAGTTTACTGAAGATCAGGCTGCTCCTGATGACAAAAACAAGACTGACCCAGGGGTCCACGTTACCCTGAAGTCACTCAGCAGTCAGATCGAAACCATGCGCAGCCCTGATGGCTCCAAGAAGCACCCGGCCCGGACTTGCGATGACTTGAAGCTTTGCCATTCCGCAAAGCAGAGCGGTGAATACTGGATTGATCCTAATCAAGGATCAGCCGAAGATGCAATCAAAGTTTACTGCAATATGGAAACGGGAGAAACATGTATTTCAGCAAATCCATCCACTATTCCACTTAAAACTTGGTGGGCCAGCAAATCTCCTGACAATAAGCCTGTCTGGTATGGCCTTGACATGAATAGAGGATCTCAGTTCACTTATGGAGACTATCAGTCACCTAACACTGCCATCACACAGATGACCTTCTTGCGCCTTTTGTCAAAAGAAGCATCTCAGAACATTACTTACATCTGTAAAAACAGCGTGGGATACATGGATGATGAGATCAAGGACCTCAAGAAAGCTGTGGTTCTTAAAGGCGCAAATGACTTGGATATCAAGGGAGATGGAAACATTAGATTCAGATATACAGTTCTTCAAGACACTTGCTCTAAGCGAAATGGAAACGTGGGCAAGACCGTCTTCGAATACAGAACCCAGAACGTGGCACGCTTGCCCATCATAGATATCGCCCCTGTGGATATTGGCAGCACAGACCAGGAATTCGGCGTTGAAGTTGGGCCAGTTTGCTTTATGTGA

Related Sequences

XP_004872360.1 Protein

Col5a2 PREDICTED: collagen alpha-2(V) chain [Heterocephalus glaber]

Length: 1499 aa      View alignments
>XP_004872360.1
MMANWVEARPLLILTVLLGQSVSIKAQDEGEDDEYTEEIACTQNGQMYLNRDIWKPSACQICVCDNGAILCDKIQCQEVLNCADPVTPPGECCPVCPQTPGSGNTNFGRGRKGQKGEPGLVPVVTGIRGRPGPAGPPGSQGPRGDRGPKGRPGPRGPQGIDGEPGIPGQPGSPGPPGHPSHPGPDGMSRPFSAQMAGLDEKSGLGSQVGFMPGSVGPVGPRGPQGLQGQQGGVGPAGPPGEPGEPGQMGPIGARGPEGPPGKPGEDGEAGRNGNSGEVGFSGSPGARGFPGAPGLPGLKGHRGHKGLDGPKGEIGAPGAKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGQRGAHGMPGKPGPMGPLGISGSPGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPAGSQGLPGAMGTDGTPGAKGPTGSAGTSGPPGLLGPPGSPGPQGSTGPQGIRGQPGDPGVPGFKGEAGPKGEPGPHGVQGPIGPPGEEGKRGPRGDPGTVGPPGPLGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGGQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPPGSVGIRGQPGSMGLPGPKGSSGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGLAGERGEQGPPGPTGFQGLPGPPGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNPGERGEPGITGLPGEKGMAGGHGPDGPKGSPGPTGTVGDTGPPGLQGMPGERGIAGTPGPKGDRGGIGEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGEPGPRGLVGPPGSRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPMGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPAGAPGPAGPIGEPGKEGPPGLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGVVGMPGQRGERGMPGLPGQAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGDPGPAGLPGSSGAPGTPGPVGAPGDAGQRGDPGSRGPIGPPGRAGKRGLPGPQGPRGDKGDNGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSPGIPGPFGPRGPPGPVGPSGKEGNPGPHGPVGPPGVRGSVGEAGPEGPPGEPGPPGPPGPPGHLTAALGDIMGHYDESMADPLPEFTEDQAAPDDKNKTDPGVHVTLKSLSSQIETMRSPDGSKKHPARTCDDLKLCHSAKQSGEYWIDPNQGSAEDAIKVYCNMETGETCISANPSTIPLKTWWASKSPDNKPVWYGLDMNRGSQFTYGDYQSPNTAITQMTFLRLLSKEASQNITYICKNSVGYMDDEIKDLKKAVVLKGANDLDIKGDGNIRFRYTVLQDTCSKRNGNVGKTVFEYRTQNVARLPIIDIAPVDIGSTDQEFGVEVGPVCFM