Sequence details NCBI ID: XM_004871266.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Hcn3
Gene Name hyperpolarization activated cyclic nucleotide-gated potassium channel 3, transcript variant X1
Entrez Gene ID 101700183

Database interlinks

Part of NW_004624885.1 (Scaffold)

For more information consult the page for NW_004624885.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

HCN3 ENSCPOG00000027026 (Guinea pig)

Gene Details

Uncharacterized protein

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000019453, Guinea pig)

Protein Percentage 94.87%
CDS Percentage 91.92%
Ka/Ks Ratio 0.06931 (Ka = 0.0241, Ks = 0.3473)

HCN3 ENSG00000143630 (Human)

Gene Details

hyperpolarization activated cyclic nucleotide-gated potassium channel 3

External Links

Gene Match (Ensembl Protein ID: ENSP00000357342, Human)

Protein Percentage 94.32%
CDS Percentage 89.84%
Ka/Ks Ratio 0.05228 (Ka = 0.0269, Ks = 0.5146)

Hcn3 ENSMUSG00000028051 (Mouse)

Gene Details

hyperpolarization-activated, cyclic nucleotide-gated K+ 3

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000029686, Mouse)

Protein Percentage 93.84%
CDS Percentage 87.68%
Ka/Ks Ratio 0.05173 (Ka = 0.0337, Ks = 0.651)

Hcn3 ENSRNOG00000020444 (Rat)

Gene Details

hyperpolarization-activated cyclic nucleotide-gated potassium channel 3 (Hcn3), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000027785, Rat)

Protein Percentage 93.21%
CDS Percentage 87.61%
Ka/Ks Ratio 0.05808 (Ka = 0.0376, Ks = 0.6481)

Genome Location

Sequence Coding sequence

Length: 2367 bp    Location: 2281560..2271588   Strand: -
Raw sequence   
>XM_004871266.1
ATGGAGGCGGAGCAGCGACCGGCCGCGGGGGTCGGCGAGGGGGCGCCCCCTGGGCTGGAGGCGGTGCCTCCCGCGGCTCCCGCGCCGACCGCCGCGGCCTCAGCTCCCACCGCCGGGCCCGCGCCCGAGCCGAAGAGGAGGCCGCTCGGGACCCTGCTGCAGCCCACCGTCAACAAGTTCTCTCTTCGGGTGTTCGGCAGCCACAAGGCGGTGGAGATCGAGCAGGAGCGCGTGAAGTCGGCGGGGGCCTGGATCATCCACCCCTACAGCGACTTCCGGTTTTACTGGGACCTGATCATGCTGCTGTTGATGGTGGGGAATCTCATTGTTCTGCCTGTGGGAATCACCTTCTTCAAAGAAGAGAATTCTCCCCCCTGGATTGTCTTCAATGTCCTCTCTGACACTTTCTTCTTGCTGGATCTGGTGCTCAACTTCCGAACGGGGATCGTGGTGGAGGAGGGTGCTGAGATCCTGCTGGCACCTCGGGCCATCCGCACTCGCTACCTGCGTACCTGGTTCCTGGTGGACTTCATCTCCTCCATCCCTGTGGATTACATCTTCCTGGTGGTGGAGCTGGAGCCCCGGCTGGACACTGAGGTCTACAAAACAGCTCGGGCCCTGCGCATTGTCCGCTTCACCAAGATCCTCAGCTTGCTGCGGCTGCTCCGCCTCTCCCGCCTCATCCGATACATACACCAGTGGGAGGAGATCTTCCACATGACCTATGACCTGGCCAGCGCTGTGGTCCGAATCTTCAACCTCATTGGGATGATGCTGCTGCTCTGCCACTGGGACGGCTGCCTGCAGTTCCTGGTCCCCATGCTGCAGGACTTCCCTCCTGACTGCTGGGTCTACATGAACCGCATGGTGAACCACTCGTGGGGCCGCCAGTACTCCCACGCCCTGTTCAAGGCCATGAGCCACATGCTGTGCATTGGCTATGGGCAGCAGGCACCTGTGGGCATGCCCGATGTCTGGCTCACCATGCTCAGCATGATCGTGGGCGCCACCTGCTATGCCATGTTCATCGGCCACGCCACTGCCCTCATCCAGTCCCTGGACTCTTCCCGGCGTCAGTACCAGGAGAAGTACAAGCAGGTGGAGCAGTACATGTCCTTCCACAAGCTGCCAGCTGACACCCGGCAGCGCATCCACGAGTACTATGAGCACCGCTACCAGGGCAAGATGTTCAATGAGGAGAGCATCCTGGGGGAGCTGAGCGAGCCGCTGCGGGAGGAGATCATTAACTTCACCTGCAGGGGCCTGGTGGCCCACATGCCGCTGTTTGCCCACGCCGACCCCAGCTTTGTCACTGCAGTTCTCACCAAGCTACGATTTGAGGTCTTCCAGCCAGGGGACCTCGTGGTGCGTGAAGGCTCCGTGGGGAGGAAGATGTACTTCATCCAGCATGGGCTGCTCAGTGTGCTGGCGAGAGGTGTCCGGGACACTCGCCTGACTGATGGATCCTACTTTGGGGAGATCTGCCTGCTGACTCGGGGTCGGCGCACGGCCAGCGTGCGGGCTGACACCTACTGCCGCCTCTACTCCCTCAGCGTGGACCACTTCAACGCCGTGCTCGAGGAGTTCCCCATGATGCGCCGGGCCTTTGAGACGGTGGCCATGGACCGGCTGCGCCGCATCGGCAAGAAGAATTCCATACTGCAGCGAAAACGCTCAGAGCCGAGTCCGAGTCCGAGTCCGAGTCCGAGTCCAGGCAGTGGTGGCGGCACCATGGAGCAGCACCTGGTCCAACACGACAGGGACATGGCCCGGGGCGTCCGGGGCCTGGGCCCGGGCCCGGGAGCGCGGCTCGCTGGGAGGCCCGTGCTGTGGGAGCCGCTGGTGCACGCACCTCTGCAGGCAGCTGCTGTGACCTCCAACGTGGCCATCGCCCTGACTCACCACCGGGGCCCTCTGCCCCTCTCCCCCGACTCCCCAGCTGCCCTCCTGGCTCGGTCCGCTCGGCGCGCAGCAGGCTCCCCAGCCTCCCCGCTGGTGCCCATCCGAGCTGGCCCCCTGCTGGCACAGGGGCCCTGGGCATCCACCTCCCGCCTGCCCGCCCCCCCAGCCCGAACGCTCCATGCCAGCCTCTCCCGGGCAGGGCGCTCCCAGGTGTCCCTGCTGGGCCCTCCCCCGGGCGGAGGTGGGCAGAGGTTAGGACCTCAGGGCCGCCCACTCTCAGCTTCCCAACCCTCTCTGCCTCAGCGGGCAACAGGCGATGGCTCTCCTCGGCGGAAGGGCTCCGGAAGCGAGCGCCGGCCCTCCTCGGGGCTCCTGCCCAAGCCTCCAGGGACAGCCCAGCCACCCAGGCCACCAGTGCCTGAGCCAGCCACCCCGCGGGGCCCCCAGCTCTCCGCCAATATGTGA

Related Sequences

XP_004871323.1 Protein

Hcn3 PREDICTED: potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3 isoform X1 [Heterocephalus glaber]

Length: 788 aa      View alignments
>XP_004871323.1
MEAEQRPAAGVGEGAPPGLEAVPPAAPAPTAAASAPTAGPAPEPKRRPLGTLLQPTVNKFSLRVFGSHKAVEIEQERVKSAGAWIIHPYSDFRFYWDLIMLLLMVGNLIVLPVGITFFKEENSPPWIVFNVLSDTFFLLDLVLNFRTGIVVEEGAEILLAPRAIRTRYLRTWFLVDFISSIPVDYIFLVVELEPRLDTEVYKTARALRIVRFTKILSLLRLLRLSRLIRYIHQWEEIFHMTYDLASAVVRIFNLIGMMLLLCHWDGCLQFLVPMLQDFPPDCWVYMNRMVNHSWGRQYSHALFKAMSHMLCIGYGQQAPVGMPDVWLTMLSMIVGATCYAMFIGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPADTRQRIHEYYEHRYQGKMFNEESILGELSEPLREEIINFTCRGLVAHMPLFAHADPSFVTAVLTKLRFEVFQPGDLVVREGSVGRKMYFIQHGLLSVLARGVRDTRLTDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDHFNAVLEEFPMMRRAFETVAMDRLRRIGKKNSILQRKRSEPSPSPSPSPSPGSGGGTMEQHLVQHDRDMARGVRGLGPGPGARLAGRPVLWEPLVHAPLQAAAVTSNVAIALTHHRGPLPLSPDSPAALLARSARRAAGSPASPLVPIRAGPLLAQGPWASTSRLPAPPARTLHASLSRAGRSQVSLLGPPPGGGGQRLGPQGRPLSASQPSLPQRATGDGSPRRKGSGSERRPSSGLLPKPPGTAQPPRPPVPEPATPRGPQLSANM