Sequence details NCBI ID: XM_004870805.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Trpc6
Gene Name transient receptor potential cation channel, subfamily C, member 6
Entrez Gene ID 101722559

Database interlinks

Part of NW_004624878.1 (Scaffold)

For more information consult the page for NW_004624878.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

TRPC6 ENSCPOG00000005560 (Guinea pig)

Gene Details

transient receptor potential cation channel, subfamily C, member 6

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000005008, Guinea pig)

Protein Percentage 98.32%
CDS Percentage 94.55%
Ka/Ks Ratio 0.04091 (Ka = 0.0085, Ks = 0.2068)

TRPC6 ENSG00000137672 (Human)

Gene Details

transient receptor potential cation channel, subfamily C, member 6

External Links

Gene Match (Ensembl Protein ID: ENSP00000340913, Human)

Protein Percentage 96.13%
CDS Percentage 91.91%
Ka/Ks Ratio 0.06742 (Ka = 0.0214, Ks = 0.3178)

Trpc6 ENSMUSG00000031997 (Mouse)

Gene Details

transient receptor potential cation channel, subfamily C, member 6

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000057965, Mouse)

Protein Percentage 95.38%
CDS Percentage 88.17%
Ka/Ks Ratio 0.04355 (Ka = 0.0242, Ks = 0.5568)

Trpc6 ENSRNOG00000006324 (Rat)

Gene Details

transient receptor potential cation channel, subfamily C, member 6 (Trpc6), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000008905, Rat)

Protein Percentage 95.91%
CDS Percentage 88.64%
Ka/Ks Ratio 0.03806 (Ka = 0.0206, Ks = 0.5422)

Genome Location

Sequence Coding sequence

Length: 2796 bp    Location: 1321026..1468904   Strand: +
Raw sequence   
>XM_004870805.1
ATGCACCAGAGCACCGCGTTCGAGCCCCGAAGGGGAGGCTCTCCCCGGGCTGCCGCCGGAGCCGGCGCTCGGCGTAACGAAAGCCAGGATTATCTCCTCATGGACTCGGAGCTCATGGACGACGGCTGCCCCCAGCTCCCGCTGCCGCCCTACGGCTACTACCCCAGCTTCCGGGGCACTGACAACAGACTAACTCATCGGCGGCAGACAGTTCTTCGTGAGAAAGGGAGAAGGTTAGCTAATCGAGGACCAGCATACATGTTTAATGATCACTCAACAAGCCTATCTATTGAGGAGGAACGCTTTTTAGATGCAGCTGAATACGGCAACATCCCAGTGGTGCGGAAAATGTTAGAAGAGTGCCTCTCCCTCAATGTGAACTGTGTGGATTACATGGGCCAGAATGCCCTGCAATTGGCAGTGGCCAATGAGCACCTGGAAATTACAGAGCTTCTTCTCAAGAAAGAAAACCTCTCTCGGGTTGGAGATGCTTTGCTTCTAGCTATCAGTAAAGGTTATGTCCGGATTGTGGAAGCAATTCTTAGTCACCCAGCTTTTGCTGAAGGTAAAAGGTTAGCAACAAGTCCTAGCCAGTCTGAACTACAGCAAGATGATTTTTATGCCTATGATGAGGATGGGACCAGGTTCTCTCACGACGTGACTCCAATCATTCTGGCTGCCCATTGCCAAGAATATGAAATTGTTCACACTCTCCTGCGGAAAGGTGCACGGATTGAACGGCCTCATGATTATTTCTGCAAGTGCAATGAATGTAATCAGAAACAAAAGCATGACTCCTTTAGCCACTCCAGATCTAGGATCAATGCCTACAAGGGCCTGGCAAGTCCAGCTTACCTGTCATTGTCTAGTGAAGATCCAGTCATGACAGCTTTAGAACTTAGCAATGAGCTGGCAGTGCTGGCCAACATTGAGAAAGAGTTCAAGAATGACTACAAAAAGCTGTCAATGCAGTGCAAAGACTTTGTTGTTGGACTCCTTGATCTCTGCAGAAATACAGAAGAAGTCGAGGCCATTCTGAATGGGGATGTTGAAACATGCCAGCCCGGTGATCAGGGTCGTCCAAATCTCAGCCGTTTAAAACTTGCCATTAAATATGAAGTTAAAAAATTTGTAGCTCATCCAAACTGCCAGCAACAGCTTCTCTCCATATGGTATGAGAATCTTTCAGGTTTACGGCAGCAGACGATGGCAGTCAAGTTTCTTGTGGTCCTTGGTGTGGCCATTGGACTGCCCTTCCTGGCTTTGATTTACTGGTGTGCTCCGTGCAGCAAGATGGGGAAGATAATGCGTGGACCATTTATGAAGTTTGTAGCACATGCAGCCTCCTTCACCATTTTTCTGGGACTTCTAGTCATGAATGCAGCTGACAGATTTGAAGGCACTAAACTGCTTCCTAATGAAACCAGCACAGATAATGCAAAACAGCTGTTCAGGATGAAAACATCCTGCTTCTCATGGATGGAGATGCTCATTATATCCTGGGTAATAGGCATGATATGGGCTGAATGTAAAGAAATTTGGACTCAAGGTCCTAAAGAATACCTATTTGAGCTGTGGAATATGCTTGATTTTGGCATGTTAGCAATCTTTGCAGCATCATTCATTGCAAGATTCATGGCGTTTTGGCATGCATCCAAAGCTCAGAGCATTATCGATGCAAATGACACTCTGAAAGACTTGACAAAAGTTACATTGGGAGACAATGTGAAATACTACAATTTGGCCAGGATAAAATGGGACCCCTCTGATCCTCAAATTATCTCTGAAGGTCTTTATGCAATTGCTGTAGTTTTAAGTTTCTCCAGAATAGCTTATATTTTACCAGCAAATGAAAGCTTTGGACCTCTGCAGATATCACTTGGAAGAACAGTAAAAGATATCTTCAAGTTCATGGTCATATTCATCATGGTGTTTGTGGCCTTTATGATTGGGATGTTCAACCTCTACTCCTACTACATTGGTGCAAAACAAAATGAAGCCTTCACAACAGTTGAAGAGAGCTTTAAAACACTGTTCTGGGCCATATTTGGACTTTCTGAAGTGAAATCAGTGGTCATCAACTATAATCATAAATTTATTGAAAATATCGGCTATGTTCTTTATGGAGTCTATAACGTTACAATGGTCATTGTTTTGTTAAATATGTTAATTGCAATGATCAACAGTTCATTCCAGGAAATTGAGGATGATGCTGATGTGGAATGGAAATTTGCAAGGGCCAAACTTTGGTTTTCCTACTTCGAGGAGGGGAGAACACTTCCTGTTCCCTTCAACCTGATGCCAAGCCCAAAGTCACTGTTGTATCTCTTACTGAAATTTAAAAAGTGGATTTCTGAGCTGTTCCAGGGTCATAAAAAAGGTTTCCAAGAGGATGCAGAGATGAATAAGAGAAATGAAGAAAAGAAATTTGGAATTTTGGGAAGTCACGAAGACCTTTCAAAGTTATCACTTGACAAAAACCAGCTTGGGCAAAACAAACAATCAAGCATAAGAAGCTCAGAAGATTTCCATTTAAATAGTTTCAGTAATCCTCCAAGACAATATCAGAAAATAATGAAAAGGCTCATTAAAAGATATGTACTGCAAGCCCAGATAGATAAAGAGAGTGACGAGGTTAACGAAGGGGAACTGAAGGAAATTAAGCAGGACATCTCCAGTCTCCGCTACGAACTCCTAGAAGAAAAATCTCAGAATACAGAAGACCTAGCAGAGCTTATTAGAAAACTTGGAGAGAAATTATCCTCAGAACCAAAGCAAGAAGAAAACAATAGATAA

Related Sequences

XP_004870862.1 Protein

Trpc6 PREDICTED: short transient receptor potential channel 6 [Heterocephalus glaber]

Length: 931 aa      View alignments
>XP_004870862.1
MHQSTAFEPRRGGSPRAAAGAGARRNESQDYLLMDSELMDDGCPQLPLPPYGYYPSFRGTDNRLTHRRQTVLREKGRRLANRGPAYMFNDHSTSLSIEEERFLDAAEYGNIPVVRKMLEECLSLNVNCVDYMGQNALQLAVANEHLEITELLLKKENLSRVGDALLLAISKGYVRIVEAILSHPAFAEGKRLATSPSQSELQQDDFYAYDEDGTRFSHDVTPIILAAHCQEYEIVHTLLRKGARIERPHDYFCKCNECNQKQKHDSFSHSRSRINAYKGLASPAYLSLSSEDPVMTALELSNELAVLANIEKEFKNDYKKLSMQCKDFVVGLLDLCRNTEEVEAILNGDVETCQPGDQGRPNLSRLKLAIKYEVKKFVAHPNCQQQLLSIWYENLSGLRQQTMAVKFLVVLGVAIGLPFLALIYWCAPCSKMGKIMRGPFMKFVAHAASFTIFLGLLVMNAADRFEGTKLLPNETSTDNAKQLFRMKTSCFSWMEMLIISWVIGMIWAECKEIWTQGPKEYLFELWNMLDFGMLAIFAASFIARFMAFWHASKAQSIIDANDTLKDLTKVTLGDNVKYYNLARIKWDPSDPQIISEGLYAIAVVLSFSRIAYILPANESFGPLQISLGRTVKDIFKFMVIFIMVFVAFMIGMFNLYSYYIGAKQNEAFTTVEESFKTLFWAIFGLSEVKSVVINYNHKFIENIGYVLYGVYNVTMVIVLLNMLIAMINSSFQEIEDDADVEWKFARAKLWFSYFEEGRTLPVPFNLMPSPKSLLYLLLKFKKWISELFQGHKKGFQEDAEMNKRNEEKKFGILGSHEDLSKLSLDKNQLGQNKQSSIRSSEDFHLNSFSNPPRQYQKIMKRLIKRYVLQAQIDKESDEVNEGELKEIKQDISSLRYELLEEKSQNTEDLAELIRKLGEKLSSEPKQEENNR