Sequence details NCBI ID: XM_004870632.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Lig3
Gene Name ligase III, DNA, ATP-dependent, transcript variant X8
Entrez Gene ID 101701011

Database interlinks

Part of NW_004624875.1 (Scaffold)

For more information consult the page for NW_004624875.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

LIG3 ENSCPOG00000013032 (Guinea pig)

Gene Details

ligase III, DNA, ATP-dependent

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000011732, Guinea pig)

Protein Percentage 93.44%
CDS Percentage 92.98%
Ka/Ks Ratio 0.16877 (Ka = 0.0328, Ks = 0.1946)

LIG3 ENSG00000005156 (Human)

Gene Details

ligase III, DNA, ATP-dependent

External Links

Gene Match (Ensembl Protein ID: ENSP00000367787, Human)

Protein Percentage 90.78%
CDS Percentage 90.06%
Ka/Ks Ratio 0.16731 (Ka = 0.0494, Ks = 0.2953)

Lig3 ENSMUSG00000020697 (Mouse)

Gene Details

ligase III, DNA, ATP-dependent

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000133805, Mouse)

Protein Percentage 88.64%
CDS Percentage 87.29%
Ka/Ks Ratio 0.15199 (Ka = 0.064, Ks = 0.4211)

Lig3 ENSRNOG00000021815 (Rat)

Gene Details

ligase III, DNA, ATP-dependent (Lig3), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000052836, Rat)

Protein Percentage 88.75%
CDS Percentage 86.66%
Ka/Ks Ratio 0.14128 (Ka = 0.0655, Ks = 0.4635)

Genome Location

Sequence Coding sequence

Length: 3051 bp    Location: 2872159..2897365   Strand: +
Raw sequence   
>XM_004870632.1
ATGACTTTGACTTTCAAGATCCTCTTCTCACGAAACCTCCAAGCACTTGGACGAAAAGAGCTGTGTTCATTCCGAGAACAGTCTCATTGGTCTGGCATAAGACAGCTCAGTAGTTGGTCAAGAACAGATCTGCTTCATGGGCACTTCCTCCTCCAGAGAAGAAAGCCTATTCTGCCTTTGCAGGGAGGCCATCTAAGACCACAAGCCACCTGCTTCATTTTCTTGCCAGGGTCGCATGTGGGACTCTGCAGTGGCCCATGTGAGATGGCTGAGCAACGATTCTGTGTGGACTATGCTAAGCGCGGCACAGCTGGCTGCAAAAAATGCAAAGAAAAGATTGTGAAGGGCATATGCCGAATTGGCAAAGTGGTACCCAACCCATTCTCAGAATCTGGGGGTGATATGAAAGAATGGTACCATATTAAATGTATGTTTGAGAAACTGGAGCGAGCTCGGGCCACCACAAAAAAAATTGAAGACCTCACTGAGCTGGAAGGCTGGGAAGAACTGGAAGATAGCGAGAAGGAACAGATAACTCAACATATTGCAGATCTATCTTCTAAGGCAGCAAGTACACCAAAGAAAAAAGCTGTTGTTCAGGCTAAGTTGACAGCCGCTGGCCAGGTGACTTCCCCAGTGAAAGGCTCCTCATTTGTCACCAGTACCAATCCCCGGAAATTTTCTGGTTTTTCAGCAGCCAAGCCCAACAATTCTGAGCAAGCTCCCTCAAGCCCTGCGCCTAAGACAAGTCTCTCTTCAAGCAAATGTGACCCCAAGCACAAGGATTGTCTGCTACGGGAGTTTCGGAAGTTGTGTGCCATGGTGGCTGATAATCCTAGCTATAACTCAAAGACCCAGATCATCCAGGACTTCTTGAGGAAAGGCTCAGCAGGAGATGGTTTCCACGGCGATGTATATCTAACAGTGAAGTTGCTGCTACCAGGTGTCATTAAGAGTGTTTACAACTTGAATGATAAGCAGATTGTGAAGCTTTTCAGCCGCATTTTTAACTGCAATGCAGATGATATGGCACGAGACCTAGAACAGGGTGACGTGTCAGAGACGATCAGAGTCTTCTTTGAGCAGAGCAAGTCTTTCCCTCCAGCTGCCAAGAGCCTCCTTACTATCCAGGAAGTAGATGAATTTCTTCTGCAACTCTCCAAGCTCACCAAGGAGGATGAGCAGCAGCAGGCCCTGCAGGACATTGCCTCTAGGTGTACAGCCAATGACCTTAAGTGCATCATCAGGTTGATCAAACATGATCTGAAGATGAACTCAGGTGCAAAACATGTTTTAGATGCCCTTGACCCCAATGCCTATGAAGCTTTCAAAGCCTCACGCAATCTGCAGGATGTGGTGGAGCGGATCCTTCAAAATGAGCAAGAGGTAAAGAAGGAGCCAGGCCGGAAACGGGCTCTGAGCGTCCAGGCCTCACTGATGACCCCCGTGCAGCCTATGCTGGCAGAGGCCTGCAAGTCCATCGAGTATGCAATGAAGAAGTGTCCCAATGGCATGTTCTCTGAGATCAAATATGACGGTGAGCGAGTCCAGGTGCATAAGAATGGGGACCACTTCAGCTACTTCAGCCGCAGTCTCAAGCCTGTCCTGCCTCACAAGGTGGCCCACTTTAAGGACTACATCCCCCAGGCTTTTCCTGGGGGTCATAGCATGATCTTGGACTCTGAGGTACTCCTGATTGACAACAAAACAGGCAAACCACTGCCCTTTGGGACTCTGGGTGTGCACAAGAAAGCTGCTTTCCAAGATGCTAATGTCTGCCTGTTTGTTTTTGATTGTGTCTACTTCAATGATGTCAGCTTGATGGACAGGCCCCTTTGTGAGCGGCGGAAGTTTCTTCATGACAACATGGTTGAAATTCCCAACCGGATCATGTTCTCAGAAATGAAGCAAGTTACAAAAGCTTCGGACTTGGCTGATATGATAAACCAAGTGATCCGGGAGGGCTTGGAAGGGCTGGTGCTGAAGGATGTGAAGGGTACGTATGAGCCTGGGAAGCGGCACTGGCTGAAAGTGAAGAAAGACTATTTGAATGAGGGGGCCATGGCCGACACAGCTGACCTGGTGGTTCTTGGGGCCTTCTATGGACAAGGCAGCAAAGGTGGCATGATGTCAATCTTCCTTATGGGCTGCTATGATCCAGGCAGCCAGAAGTGGTGCACAGTCACCAAGTGTGCAGGAGGCCATGATGATGCAACACTCACCCGCCTGCAGAAGGAACTGGACATGGTGAAGATCAGCAAGGACCCCAGCAAAATACCCAGCTGGCTGAAGATCAACAAGATATACTATCCTGACTTCATCGTCCCAGACCCAAAGAAAGCTGCTGTGTGGGAGATCACAGGAGCAGAATTCTCCAAATCTGAGGCACACACAGCTGATGGGATCTCCATTCGATTCCCTCGCTGCACCCGAATCCGGGATGACAAGGACTGGAAATCTGCCACCAATCTCCCCCAACTCAAGGAACTGTACCAGCTGTCCAAGGAGAAGGCAGACTTCACTATAGTGGCTGGAGATGAGGGGGGCTCCACTACAGGAGGCAGCAGTGGCGAGAATGAGGGCACCTCAGGGACTGCTGTTTCTCACAAGGCACCCAGAGCCTCCCCCAAACCTTCTGCCAGTGCCAGGAAGGCTGAAGGGAAGCTGAGTAACCCTAACAGCAAAGACAGCAACAAGCTGAATGCAAAGCCTTCCCCTGTGAAACTGGGAGAGAAACTGGCCTTGAAGTCTTCCCCAGTGAAAGTAGGGGAGAAGAGGAAAGCTGCTGATGACAGCCCATGCCATGCAAAGGTGAAGGTGCTGCTGGACATCTTTACTGGGGTGCGGCTCTACTTGCCACCCTCCACACCAGACTTCGGTCATCTCAGACGCTACTTTGTGGCATTCGACGGGGACCTGGTGCAGGAATTTGACGTGGCCTCAGCCACCCACGTGCTCGGTAACAGGGACAAGAACCCTGAGGCCCAGCTGGTCTCCCCAGAGTGGATTTGGGCATGTATCCGTAAACAGAGGCTAGTAGCTCCCTGCTAG

Related Sequences

XP_004870689.1 Protein

Lig3 PREDICTED: DNA ligase 3 isoform X8 [Heterocephalus glaber]

Length: 1016 aa      View alignments
>XP_004870689.1
MTLTFKILFSRNLQALGRKELCSFREQSHWSGIRQLSSWSRTDLLHGHFLLQRRKPILPLQGGHLRPQATCFIFLPGSHVGLCSGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGICRIGKVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDSEKEQITQHIADLSSKAASTPKKKAVVQAKLTAAGQVTSPVKGSSFVTSTNPRKFSGFSAAKPNNSEQAPSSPAPKTSLSSSKCDPKHKDCLLREFRKLCAMVADNPSYNSKTQIIQDFLRKGSAGDGFHGDVYLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFNCNADDMARDLEQGDVSETIRVFFEQSKSFPPAAKSLLTIQEVDEFLLQLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDLKMNSGAKHVLDALDPNAYEAFKASRNLQDVVERILQNEQEVKKEPGRKRALSVQASLMTPVQPMLAEACKSIEYAMKKCPNGMFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDYIPQAFPGGHSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCVYFNDVSLMDRPLCERRKFLHDNMVEIPNRIMFSEMKQVTKASDLADMINQVIREGLEGLVLKDVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPGSQKWCTVTKCAGGHDDATLTRLQKELDMVKISKDPSKIPSWLKINKIYYPDFIVPDPKKAAVWEITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKEKADFTIVAGDEGGSTTGGSSGENEGTSGTAVSHKAPRASPKPSASARKAEGKLSNPNSKDSNKLNAKPSPVKLGEKLALKSSPVKVGEKRKAADDSPCHAKVKVLLDIFTGVRLYLPPSTPDFGHLRRYFVAFDGDLVQEFDVASATHVLGNRDKNPEAQLVSPEWIWACIRKQRLVAPC