Sequence details NCBI ID: XM_004870352.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Smg8
Gene Name smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)
Entrez Gene ID 101718333

Database interlinks

Part of NW_004624871.1 (Scaffold)

For more information consult the page for NW_004624871.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SMG8 ENSCPOG00000002768 (Guinea pig)

Gene Details

SMG8 nonsense mediated mRNA decay factor

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000002513, Guinea pig)

Protein Percentage 97.87%
CDS Percentage 94.43%
Ka/Ks Ratio 0.05576 (Ka = 0.0111, Ks = 0.1994)

SMG8 ENSG00000167447 (Human)

Gene Details

SMG8 nonsense mediated mRNA decay factor

External Links

Gene Match (Ensembl Protein ID: ENSP00000438748, Human)

Protein Percentage 96.77%
CDS Percentage 92.46%
Ka/Ks Ratio 0.05401 (Ka = 0.0153, Ks = 0.2841)

Smg8 ENSMUSG00000020495 (Mouse)

Gene Details

smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000020801, Mouse)

Protein Percentage 95.96%
CDS Percentage 88.92%
Ka/Ks Ratio 0.04108 (Ka = 0.0197, Ks = 0.4802)

Smg8 ENSRNOG00000005769 (Rat)

Gene Details

Protein Smg8

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000008107, Rat)

Protein Percentage 95.35%
CDS Percentage 88.45%
Ka/Ks Ratio 0.04728 (Ka = 0.023, Ks = 0.4854)

Genome Location

Sequence Coding sequence

Length: 2973 bp    Location: 1094710..1100633   Strand: +
Raw sequence   
>XM_004870352.1
ATGGCGGGTCCCGTCCGCTTGCGAGAGCTTTTAATGGGCGCCTCAGCCTGGATGGGCTCTGAAAGTCCCGGAGCGTCCCCTACAGAAGGCGGAGGGAATGCGGGTGGCGCACCGGAGCCCCCGTGGCGAGAGGATGAGATTTGCGTGGTGGGAATCTTCGGCAAGACGGCTCTGCGCCTGAATTCCGAGAAGTTCTCCCTTGTCAACACGGTGTGCGACCGACAGATCTTTCCCCTCTTTCGTCACCAAGATCCGGAGGATCCAGGTCCTGGAACCAAAACCGAAGCTGGCGCTGTCAGTGAGGCCGGTGGATCCGGGGACCCAGGGGCTGCCGCCGGGGATCCAGTTCGGGGAGGTGTAGCTGGCACTGAAGGAAACCGAACTGAGCCAGGTTCCCAGGACTTCAGCCTTCTGCAGGCCTATTACAATCAGGAAAGCAAAGTTCTTTATCTTCTTCTCACTTCCATTTGTGATAATTCACAGCTTTTGCGGGCTTGTCAGGCTCTTCAGAGCGGGGAAGCTGGAGGAGGCCTCTCTTTACCACATGCAGAAGCGCACGAGTTCTGGAAGCATCAGGAGAAGTTGCAGTGCCTCAGTCTCCTTTACCTTTTCTCCGTTTGTCACATCTTGCTCCTGGTCCATCCCACTTGTTCCTTTGACATCACTTATGATCGAGTGTTCAGAGCCCTGGATGGGCTGAGACAGAAAGTACTGCCCCTTCTCAAAACAGCCATTAAGGATTGTCCAGTTGGCAAAGACTGGAAGCTAAACTGCCGACCTTGCCCACCTAGACTCCTTTTCCTCTTCCAACTCAATGGAGCCCTTAAGGTGGAACCGCCTCGGAGCCAGGACACTGCTCATCCAGACAAGCCCAAGAAACATTCTCCCAAAAGAAGACTGCAGCATGCCTTGGAGGATCAGATCTATAGAATCTTCCGTAAGAGTCGAGTCTTGACTAATCAGAGTATTAATTGCCTCTTTACTGTACCTGCCAACCAGGCTTTTGTGTACATAGTCCCTGGAAGCCAGGAGGAGGACCCAGTAGGCATGTTGTTAGACCAACTTAGGAGTCACTGTACTGTGAAGGATCCTGAATCTTTGCTGGTGCCTGCACCCCTTTCTGGGCCCAGGCGATATCAGGTGATGAGGCAGCACAGCCGACAACAACTTTCCTTTCACATTGATAGCAGCAGTTCCAGTTCTTCAGGCCAACTAGTGGATTTCACTCTTCGGGAATTCCTGTGGCAGCATGTGGAACTGGTCCTAAGCAAGAAAGGTTTTGATGACAGCGTGGGCAGGAACCCACAGCCTTCCCATTTTGAACTTCCCACTTATCAGAAGTGGATCTCAGCAGCTGCAAAACTATACGAAGTGGCTATTGATGGGAAAGAGGAGGATGTGGGGTCACCCACTGGAGAGCTAACTTCTAAGATTTTCAGTAGTATTAAAGTCTTGGAAGGGTTTTTGGATATTGACACAAAATTCTCAGAAAACCGGTGCCAAAAAGCTTTACCCATGGCCCATAGTGCCTATCAGTCAAATTTGCCTCATAATTACACAATGACTGTCCATAAGAATCAGCTTGCACAGGCTCTTCGAGTGTACAGTCAGCATGCCAGAGGTCCAGCCTTTCACAAATACGCTATGCAGTTACACGAGGACTGCTACAAATTTTGGAGCAACGGCCATCAGCTCTGTGAGGAGAGAAGTTTAACTGATCAACACTGTGTACATAAATTTCACTCATTACCTAAATCAGGAGAAAAACCAGAAGCTGATAGAAATCCCCCTGTGCTCTATCACAACAGCCGAGCTCGATCCACTGGTGCCTGTAACTGTGGACGGAAGCAAGCACCCCGAGATGATCCCTTTGACATCAAGGCAGCTAACTACGACTTTTATCAGCTTCTGGAAGAAAAATGTTGTGGAAAATTGGATCATATCAATTTCCCAGTATTTGAACCAAGTACTCCAGATCCTGCTCCTGCCAAAAATGAATCCTCTCCTGCCCCTCCAGATTCGGACGCTGATAAACTTAAAGAAAAAGAACCTCAAACCCAAGGAGAGAGCACAAGCCTGAGTTTAGCTTTGAGTTTGGGCCAGTCTACAGATAGCTTAGGTACCTATCCGGCTGATCCACAGGCTGGAGGAGACAATGCAGAAGTTCATGGTCAAGAAGTAAAACCTGAGAAGAGACCAAATCTGGTTGATCGACAGGCATCCACAGTTGAGTATCTGCCAGGCATGCTACATTCCAATTGCCCAAAAGGTCTTCTACCCAAATTCTCCAGCTGGTCTTTGGTGAAACTAGGCCCTGCTAAGTCTTACAACTTTCATACAGGTCTAGACCAACAGGGCTTCATTCCAGGAACAAACTATCTTATGCCTTGGGACGTTGTCATCAGGACAAGAGCTGAAGATGAAGGAGATTTAGACACAAATTCTTGGCCTGCTCCCAATAAAGCCATTCCTGGAAAGAGAAGTGCAGTTGTCATGGGAAGAGGAAGACGACGAGATGATATAGCTCGGGCTTTTGTGGGCTTTGAGTATGAAGACTCTCGAGGTCGGAGATTCATGTGCTCAGGACCTGACAAAGTAATGAAAGTGATGGGAAGTGGGCCAAAGGAATCAGCTTTAAAGGCCCTGAACAGTGATATGCCCTTATACATTCTGTCCTCGTCTCAGGGTAGAGGACTAAAACCACATTATGCTCAACTTATGAGGCTTTTTGTTGTGGTTCCTGATGCTCCTTTGCAGATAATACTAATGCCCCAGGTTCAACCAGGCCCACCACCATGTCCAGTATTTTACCCAGAAAAACAAGAAATCACTCTCCCACCTGATGGCCTTTGGGTTTTGAGATTTCCTTATGCGTATGTGACTGAGAGAGGACCTTGTTTCCCTCCTAAGGAAAATGTGCAGCTAATGAGCTATAAGGTGCTCCGTGGGGTTCTTAAAGCAGTGACACAATAA

Related Sequences

XP_004870409.1 Protein

Smg8 PREDICTED: protein SMG8 [Heterocephalus glaber]

Length: 990 aa      View alignments
>XP_004870409.1
MAGPVRLRELLMGASAWMGSESPGASPTEGGGNAGGAPEPPWREDEICVVGIFGKTALRLNSEKFSLVNTVCDRQIFPLFRHQDPEDPGPGTKTEAGAVSEAGGSGDPGAAAGDPVRGGVAGTEGNRTEPGSQDFSLLQAYYNQESKVLYLLLTSICDNSQLLRACQALQSGEAGGGLSLPHAEAHEFWKHQEKLQCLSLLYLFSVCHILLLVHPTCSFDITYDRVFRALDGLRQKVLPLLKTAIKDCPVGKDWKLNCRPCPPRLLFLFQLNGALKVEPPRSQDTAHPDKPKKHSPKRRLQHALEDQIYRIFRKSRVLTNQSINCLFTVPANQAFVYIVPGSQEEDPVGMLLDQLRSHCTVKDPESLLVPAPLSGPRRYQVMRQHSRQQLSFHIDSSSSSSSGQLVDFTLREFLWQHVELVLSKKGFDDSVGRNPQPSHFELPTYQKWISAAAKLYEVAIDGKEEDVGSPTGELTSKIFSSIKVLEGFLDIDTKFSENRCQKALPMAHSAYQSNLPHNYTMTVHKNQLAQALRVYSQHARGPAFHKYAMQLHEDCYKFWSNGHQLCEERSLTDQHCVHKFHSLPKSGEKPEADRNPPVLYHNSRARSTGACNCGRKQAPRDDPFDIKAANYDFYQLLEEKCCGKLDHINFPVFEPSTPDPAPAKNESSPAPPDSDADKLKEKEPQTQGESTSLSLALSLGQSTDSLGTYPADPQAGGDNAEVHGQEVKPEKRPNLVDRQASTVEYLPGMLHSNCPKGLLPKFSSWSLVKLGPAKSYNFHTGLDQQGFIPGTNYLMPWDVVIRTRAEDEGDLDTNSWPAPNKAIPGKRSAVVMGRGRRRDDIARAFVGFEYEDSRGRRFMCSGPDKVMKVMGSGPKESALKALNSDMPLYILSSSQGRGLKPHYAQLMRLFVVVPDAPLQIILMPQVQPGPPPCPVFYPEKQEITLPPDGLWVLRFPYAYVTERGPCFPPKENVQLMSYKVLRGVLKAVTQ