Sequence details NCBI ID: XM_004869936.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Lpin1
Gene Name lipin 1, transcript variant X2
Entrez Gene ID 101721483

Database interlinks

Part of NW_004624865.1 (Scaffold)

For more information consult the page for NW_004624865.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

LPIN1 ENSCPOG00000013546 (Guinea pig)

Gene Details

lipin 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000012195, Guinea pig)

Protein Percentage 89.66%
CDS Percentage 87.16%
Ka/Ks Ratio 0.06827 (Ka = 0.0501, Ks = 0.7346)

LPIN1 ENSG00000134324 (Human)

Gene Details

lipin 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000397908, Human)

Protein Percentage 86.79%
CDS Percentage 80.99%
Ka/Ks Ratio 0.06534 (Ka = 0.0722, Ks = 1.1056)

Lpin1 ENSMUSG00000020593 (Mouse)

Gene Details

lipin 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000070583, Mouse)

Protein Percentage 86.35%
CDS Percentage 81.55%
Ka/Ks Ratio 0.07411 (Ka = 0.0772, Ks = 1.0419)

Lpin1 ENSRNOG00000004377 (Rat)

Gene Details

lipin 1 (Lpin1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000005863, Rat)

Protein Percentage 86.35%
CDS Percentage 81.51%
Ka/Ks Ratio 0.07042 (Ka = 0.0749, Ks = 1.064)

Genome Location

Sequence Coding sequence

Length: 2799 bp    Location: 4251594..4221036   Strand: -
Raw sequence   
>XM_004869936.1
ATGGTTCTGGTGTTTCTGTGTCCCTCCCAGGCTCAGACCATGAACTACGTGGGGCAGCTGGCTGGCCAGGTGTTTGTGACAGTCAAGGAGCTCTACAAGGGACTGAACCCCGCCACCCTGTCCGGGTGCATCGACATCATTGTCATCCGCCAGCCCAATGGGACCCTCCAGTGCTCCCCGTTCCATGTCCGATTCGGGAAGATGGGTGTCCTGCGTTCCCGGGAGAAAGTGGTTGACATAGAAATCAATGGGGAATCCGTGGACTTGCACATGAAATTGGGGGACAACGGAGAAGCGTTTTTTGTGCAAGAGGCGGATAACGATCAGGAAGTGATCCCCATGTATCTGGCCACGTCCCCCATCCTGTCGGAGGGTGCCTCACGCATGGAGTGCCAGCTGAAGAGGAACTCGGTGGACAGAATCAGGGGCCTGGACCCCAGTGCCCCCGCCCCAGTCCTGCCCCCCAGTGAGGCCCTGTCCAGCAGCTTGTTAGTGAAGAAGAGGAGGAAGCGGAGGCGGAAGTCCCAGCTGGACAGCCTGAAAAGAGATGATGCCACCAACACGTCCGAGGACGAGGACATGTTTCCAATGGAGATGAGCTCTGACGAGGACTCGGGGCTGCCCGACAACAGCAGAGCGCTTCCTGACGATGCACCACCATTCCAAGATGAAAACCCTAAGGAAAACCCCCCCTCAGTCTCACTGTACCCGCAGTCAGCTTCGTACCCCAGTTCAGACAGAGAGTGGTCCCCCTGCCCCAGCCCAGTGGACTGCACCAGGAGCTACCCTCACCTTGAGGATGCCGCCGAGGGAGGCCTCTCTAGCTCCTGCCCGCCGCCGTCTTCCTGTCTTCATGCTTCGGAAAGTCCCTCAGGCTCCCGGCCTGCCACCCCGAAGAGCGACTCGGAGCTGGTGAGCAAGCCCAGCGACCGCGCGGTCCCCAAGAGCAACCTGGAGATGCTCTGGCTGTGGGGAGAGCTGCCGCAGGCCGCCAAGTCATCCTCTCCGCACAAGATGAAGGAGCCCAGCCCCCTGAGCAGCAGGAAGATCTGTGACGAAACCCACTTCCAGGCCATCCACAGCGAGTCCTCGGATACCTGCAGTGACCCGTCACCAGTGCTGGACCAGAGCCAGCCGCAGGCGGAGATGCAGCTGGTGGCTGAGGAGGACCTCGAGGGCCTGGGAGCAGCCGCTCCACCTGTGCTGGTGACCGAGGAGCCCAAGCCCCCCGCTGCCAGCGGGGCTCAGATGGCGAGCAAGACCGACTCTCCCCAGAGGAAAGATAAGCGGAGCAGACATCTGGGCGCCGATGGGGTCTACCTGGACGAACTCACAGACATGGACCCTGAAGTGGCTGCCTTGTACTTTCCCAGAAATGGAGACCCCTCGGGGCTCCCGAAGCACACCAGTGACCTGGGACCCCGCTGGGCCAACCCGTCCCCGCAGTCGGTGGGCAGCTCGGGTGCGGACAGCGGCATGGAGAGCACCACGGACGGCCTGCGGGACCCGCCGTCCATTGCCATCTCCCTGTGCGGGGGTCTCAGCGGCCACCGGGACGTCACCAAAGATGCATTTTTAGAGCAAGCTGTGTCCTATCAACAATTTGTGGACAACCCTGGGCTCATCGATGACCCCAATCTTGTGGTGAAGATTGGGAATAAGTATTATAACTGGACTACCGCAGCCCCTCTGCTCCTGGCCATGCAAGCCTTCCAGAAACCTCTGCCCAAGGCCACGGTGGAGTCTATCATGAGGGATAAGATGCCTAAGAAGGGAGGAAGATGGTGGTTTTCGTGGCGGGGAAGAAACACCACGATCAAAGAGGAGAGTAAGCCGGAGCAGTGCCTGGCCGGAAAAGGTCACAGTACCGGGGAACAGCCGCCTCAGCTCGGCATGGCCACCAGAGTGAAGCACGAGTCGTCCTCCAGTGATGAGGAGCACGCAGCTGCCAAGCTGGCCCCTGCCAGCCACCTCCCTCTGCTGTCCAGCGTCAGCTACAAGAAGACCCTGCGGCTCACGTCGGAGCAGCTGAAAAGTTTAAAGTTGAAGAACGGCCCCAACGACGTGGTCTTTAGTGTGACCACGCAGTACCAGGGCACCTGCCGCTGTGAGGGCACCATCTACCTGTGGGACTGGGACGACAAGGTCATCATTTCCGACATCGATGGGACCATCACCAGATCAGACACCCTTGGCCACATTTTGCCCACACTCGGGAAGGACTGGACCCACCAGGGCATCGCCAAGCTCTACCACAAAGTGAGCCAGAACGGGTACAAGTTTCTCTACTGCTCCGCCCGTGCCATCGGCATGGCTGACATGACGCGCGGCTACCTGCATTGGGTGAACGAGCGAGGCACGGTGCTGCCCCAGGGCCCGCTGCTCCTCAGCCCCAGCAGTCTCTTCTCTGCGCTGCACAGAGAAGTGATTGAGAAGAAGCCGGAAAAGTTTAAAGTCCAGTGTTTGACCGACATCAAGAACCTGTTTTTCCCAAACACGGAACCCTTTTATGCTGCTTTTGGGAACCGCCCGGCTGACGTGTACTCCTACAAGCAAGTGGGGGTCTCTCTGAACAGGATCTTCACGGTCAACCCCAAGGGAGAGCTGGTGCAGGAGCACGCCAAGACCAACATCTCCTCGTACGGGCGGCTCTGCGAGGTGGTGGACCACGTCTTCCCGATGCTGAAGCGGAGCCACTCTTCCGACTTCCCGTGCTCGGACACGTTCAGCAACTTCACCTTCTGGAGGGAGCCGCCGCCCCCCTTTGAAAACCAGGGCGTCCATTCAGCCTCCTCGTGA

Related Sequences

XP_004869993.1 Protein

Lpin1 PREDICTED: phosphatidate phosphatase LPIN1 isoform X2 [Heterocephalus glaber]

Length: 932 aa      View alignments
>XP_004869993.1
MVLVFLCPSQAQTMNYVGQLAGQVFVTVKELYKGLNPATLSGCIDIIVIRQPNGTLQCSPFHVRFGKMGVLRSREKVVDIEINGESVDLHMKLGDNGEAFFVQEADNDQEVIPMYLATSPILSEGASRMECQLKRNSVDRIRGLDPSAPAPVLPPSEALSSSLLVKKRRKRRRKSQLDSLKRDDATNTSEDEDMFPMEMSSDEDSGLPDNSRALPDDAPPFQDENPKENPPSVSLYPQSASYPSSDREWSPCPSPVDCTRSYPHLEDAAEGGLSSSCPPPSSCLHASESPSGSRPATPKSDSELVSKPSDRAVPKSNLEMLWLWGELPQAAKSSSPHKMKEPSPLSSRKICDETHFQAIHSESSDTCSDPSPVLDQSQPQAEMQLVAEEDLEGLGAAAPPVLVTEEPKPPAASGAQMASKTDSPQRKDKRSRHLGADGVYLDELTDMDPEVAALYFPRNGDPSGLPKHTSDLGPRWANPSPQSVGSSGADSGMESTTDGLRDPPSIAISLCGGLSGHRDVTKDAFLEQAVSYQQFVDNPGLIDDPNLVVKIGNKYYNWTTAAPLLLAMQAFQKPLPKATVESIMRDKMPKKGGRWWFSWRGRNTTIKEESKPEQCLAGKGHSTGEQPPQLGMATRVKHESSSSDEEHAAAKLAPASHLPLLSSVSYKKTLRLTSEQLKSLKLKNGPNDVVFSVTTQYQGTCRCEGTIYLWDWDDKVIISDIDGTITRSDTLGHILPTLGKDWTHQGIAKLYHKVSQNGYKFLYCSARAIGMADMTRGYLHWVNERGTVLPQGPLLLSPSSLFSALHREVIEKKPEKFKVQCLTDIKNLFFPNTEPFYAAFGNRPADVYSYKQVGVSLNRIFTVNPKGELVQEHAKTNISSYGRLCEVVDHVFPMLKRSHSSDFPCSDTFSNFTFWREPPPPFENQGVHSASS