Sequence details NCBI ID: XM_004869014.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Pnldc1
Gene Name poly(A)-specific ribonuclease (PARN)-like domain containing 1
Entrez Gene ID 101709845

Database interlinks

Part of NW_004624855.1 (Scaffold)

For more information consult the page for NW_004624855.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PNLDC1 ENSCPOG00000019565 (Guinea pig)

Gene Details

poly(A)-specific ribonuclease (PARN)-like domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000015543, Guinea pig)

Protein Percentage 88.48%
CDS Percentage 88.42%
Ka/Ks Ratio 0.23051 (Ka = 0.0723, Ks = 0.3138)

Pnldc1 ENSMUSG00000073460 (Mouse)

Gene Details

poly(A)-specific ribonuclease (PARN)-like domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000129377, Mouse)

Protein Percentage 87.01%
CDS Percentage 86.38%
Ka/Ks Ratio 0.15449 (Ka = 0.0712, Ks = 0.461)

Pnldc1 ENSRNOG00000023140 (Rat)

Gene Details

poly(A)-specific ribonuclease (PARN)-like domain containing 1 (Pnldc1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000057157, Rat)

Protein Percentage 83.87%
CDS Percentage 83.58%
Ka/Ks Ratio 0.14448 (Ka = 0.0901, Ks = 0.6239)

Genome Location

Sequence Coding sequence

Length: 1596 bp    Location: 3111674..3089775   Strand: -
Raw sequence   
>XM_004869014.1
ATGGACTTGGGCGCTGACGAGTTTGAGCAGAGCCTCCCGCTGCTGCAGAAGCTCCTCCGGGAGGCGGACTTCGTGGGTCTGGACATAGAGTTCACTGGACTTCGTTCTAACCTGTCTGGGCTCCAGCAGATCAGTCTTTTTGATTTGCCATCTGACTGGTATCTAAAGACCCGACAGAGTATTCAGCAATTTACAATCTGTCAGATTGGATTGTCTGTATTCTCCAGCATTGAAGGAGAGTCAAACATGTATATAGCCCATTCTTGTAACTTCTTTCTCTTCCCTACAACGTTTGGGATTTTGGACACAGAATTCTCTTTCCAGGCATCTAGTGTTCAGTTTTTGAATCAATATGGCTTCAACTATAACAAGTTTCTCAAAAAAGGAATTCCATATATGAATGAAGAGCAGGAGAAGAAAATTAAGCATAGTATCCTGACAGGGAACTGGAAAGTTCGCAGCTCTCTGGATAAAGATCAAATCAAGGTGGTAATTAATGAGGTGACGCGGTGGCTGGACCTGGCTGAGGAAGGTGACCAGATGACTCTGCCTGGTATTGCTGGGTTCCAGGCCTTTGAGGTGCAGCTGGTGCTGAGGCAGGCCCTGCCCAACATCTGGACAGTGTTGAGAGACCGGGGGGTGATAGTGAAGAAGGTGAGCCAGCAGCATCGCTGGTACCTTGAGCACGCCTCTGGTGATCGAGATAGCTGTTGGAAAGAGCAGATTCTTCTCTCTGCAAGGGGTTTTTCTGTCTTTTTCCAGATGTTGGTGCAAGCCCAGAAGCCCTTAGTGGGGCATAACATGATGATGGATCTACTGCATCTCCATGAGAAGTTCTTCAGACCCCTCCCAGAAAGCTATGATCAGTTTAAGCAGAATATCCACAATCTATTTCCTGTTCTTATTGACACCAAGAATGTTACAAAGGATATCTGGAAGGAACTGCATTTCCCTCGGGTTTCCAACCTCTTGGAAGTATATGAAGTGCTGAACAGTAACTTGAATCCCACCAAGGATTCTGCACCAGTGATTGTTCATGGAAACAAATGTGAAAAATATGCCAAGAAAAAGTGCCCCCATGAAGCGGGATATGATGCCTTCCTGTGTGGGTCAGTTCTTTTGAAAGTGGCACACCTCCTCCTGCAGAGAGTGCACGGCCATGTTCCCACGTCTGAGCCCTCCTTCCCGCAGTACCTTGATGTGCTGGCTCCTTACGTGAACCAAGTGAATCTTATCCGAGCGGGGGTCCCTAAAATTAACTTCTCGGGCCCGGATTTTCCCAGTATCCGGCCTCCCATCCTCATCCTCACTGTCAGGAAGTGGCCTGGGGTGAGTGAGCAGCAAGTCTACGGCGAGTTCCAGAACCTCTGCAAGTTCGACGTCAGACGGCTCACTCAAAGCCAGTTCCTGCTCCTGACCAATAAGTTTAAGGATGTCCGCAGTGTCCTGAAGGAGTACAGGTGTCACCCGACCCTGCAGGTCTCCCTGTACCGGTACTGGAGACACTCCCCCAACGTCAACTGCATGCTACAAGTCTGCAGTGTAGTTGCTGCCTGGGCCTTGCTTGGATTTCTTCTGGGAAGATCCAGCCCCTGA

Related Sequences

XP_004869071.1 Protein

Pnldc1 PREDICTED: poly(A)-specific ribonuclease PARN-like domain-containing protein 1 [Heterocephalus glaber]

Length: 531 aa      View alignments
>XP_004869071.1
MDLGADEFEQSLPLLQKLLREADFVGLDIEFTGLRSNLSGLQQISLFDLPSDWYLKTRQSIQQFTICQIGLSVFSSIEGESNMYIAHSCNFFLFPTTFGILDTEFSFQASSVQFLNQYGFNYNKFLKKGIPYMNEEQEKKIKHSILTGNWKVRSSLDKDQIKVVINEVTRWLDLAEEGDQMTLPGIAGFQAFEVQLVLRQALPNIWTVLRDRGVIVKKVSQQHRWYLEHASGDRDSCWKEQILLSARGFSVFFQMLVQAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHNLFPVLIDTKNVTKDIWKELHFPRVSNLLEVYEVLNSNLNPTKDSAPVIVHGNKCEKYAKKKCPHEAGYDAFLCGSVLLKVAHLLLQRVHGHVPTSEPSFPQYLDVLAPYVNQVNLIRAGVPKINFSGPDFPSIRPPILILTVRKWPGVSEQQVYGEFQNLCKFDVRRLTQSQFLLLTNKFKDVRSVLKEYRCHPTLQVSLYRYWRHSPNVNCMLQVCSVVAAWALLGFLLGRSSP