Sequence details NCBI ID: XM_004869009.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Slc22a1
Gene Name solute carrier family 22 (organic cation transporter), member 1, transcript variant X1
Entrez Gene ID 101706844

Database interlinks

Part of NW_004624855.1 (Scaffold)

For more information consult the page for NW_004624855.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SLC22A1 ENSCPOG00000023582 (Guinea pig)

Gene Details

solute carrier family 22 (organic cation transporter), member 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000015578, Guinea pig)

Protein Percentage 82.13%
CDS Percentage 86.58%
Ka/Ks Ratio 0.31003 (Ka = 0.1019, Ks = 0.3285)

SLC22A1 ENSG00000175003 (Human)

Gene Details

solute carrier family 22 (organic cation transporter), member 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000355930, Human)

Protein Percentage 77.98%
CDS Percentage 80.81%
Ka/Ks Ratio 0.19946 (Ka = 0.1356, Ks = 0.6799)

Slc22a1 ENSMUSG00000023829 (Mouse)

Gene Details

solute carrier family 22 (organic cation transporter), member 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000024596, Mouse)

Protein Percentage 80.87%
CDS Percentage 80.45%
Ka/Ks Ratio 0.15076 (Ka = 0.1186, Ks = 0.7868)

Slc22a1 ENSRNOG00000016337 (Rat)

Gene Details

solute carrier family 22 (organic cation transporter), member 1 (Slc22a1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000022254, Rat)

Protein Percentage 81.23%
CDS Percentage 80.32%
Ka/Ks Ratio 0.14337 (Ka = 0.1169, Ks = 0.8156)

Genome Location

Sequence Coding sequence

Length: 1665 bp    Location: 2735750..2707353   Strand: -
Raw sequence   
>XM_004869009.1
ATGCCCACTGTGGATGATGTTCTGGAGCAGGTTGGGGAATTTGGCTGGTTCCAGAAGACAATTTTTCTGAGCCTGTCCCTGGTCTCGATTGCCTTAGCCCCCATCTACTTGGGCATTGTCTTTCTGGGCTTCACCCCGGACCACTGGTGCTGGAACCCAGGGGTGGCTGAGCTGAGCCAGCGATGTGGCTGGAGCCTGGCCGAGGAGCTCAACTATACAGTGCCAGGCCTGGCGGCTGAGAACAAGGCCTTTCTCCACCAGTGCATGCAGTATGAGGTGGACTGGAACCAGAGCACCCTCAGCTGCATAGATCCTCTGTCCAGCCTGCCTTACAATAGGAGCCGCCTGCCACTGGTCCCCTGTCAGCACGGCTGGGTGTATGACATACCTGGCTCCTCCATCGTCACTGAGTTTAACTTGGTGTGTGCAGACGCCTGGAAAGTGGACCTCTTTCAGTCATGCGTGAACTTGGGCTTCTTCCTCGGCTCCCTGGGCATTGGCTACATTGCAGACAGGTTCGGCCGTAAGCTGTGTCTCCTGGGGACAGCCCTGGTCACTGCTGTGTCAGGTGTACTGACAGCAGTGGCTCCAGACTACATATCCATGGTTCTCTTCCGCCTGGTGCAGGGAATGGTCAGCAAGGGCGTCTGGATGTCGGGCTACACCCTGATCACAGAATTTGTTGGCTCAGGCTACAGAAGGATGGTGTCGATCTTGTACCAGGTGGCCTTCACAGTGGGGCTGGTGGGGCTTGCTGGGGTGGCATATGCCATTCCACACTGGCGCTGGCTCCAGCTGGCTGTGTCCCTGCCAACCTTCCTGTTCCTGCTCTACTACTGGTGTGTGCCGGAGTCGCCCCGATGGCTGTTATCGCAAAGGAGAAACACTCAAGCGGTAAAGATCATGGACTACATTGCCCAGAAGAACGGAAAACTGCCTCCTGCTGATTTAAAGATGCTCTCTGTCGAGGAGGATGTGACGGAAAAGCTGAGCCCTTCGTTTGTGGACCTGTTCCGCTCGCCGGCCCTGCGGAAGTACAGCTTGGTCCTGATGTACCTGTGGTTCTCCTGCGCTGTGCTCTACCAGGGCCTCATCTTGCATGTTGGGGCCACTGGCGAGAACCACTACCTGGATTTCTTTTACTCCTCACTGGTCGAATTCCCTGCGGCCTTCATCATGCTTGTGACCATTGACCGAGTGGGCCGAATCTATCCGTTGGCTGTGTCTAGTCTGGTGGCAGGAGCGGCCTGTTTAATCATGATTTTTATTCCACATGATCTGCGCTGGCTACAAATCTTGGTGGCTTGTGTTGGCCGGATGGGAACCACCATCATGTTGCAAATGATCTGCCTGGTGAACACCGAGCTGTATCCCACCTTTATCAGGGGCCTTGGGATGATGATGTGTTCTTCTCTCTGTGACTTGGGTGGGATCATCACACCCTTCATAGTCTACAGGCTGATGGAAGTTTGGCAAGCCTTGCCCCTCATTTTGTTTGGGGTGCTGAGCCTGACTGCTGGAGGAATGACGCTGCTTCTTCCAGAGACCAAGGGGGTCTCTCTGCCTGAGACCATTGAGGATGCTGAGAATCTCCAGAGGAAAGCGAAGCCCAAAGAAAACACAATTTACCTCCAGGCCCAAACATCTGAATGCGAAGGCACCTGA

Related Sequences

XP_004869066.1 Protein

Slc22a1 PREDICTED: solute carrier family 22 member 1 isoform X1 [Heterocephalus glaber]

Length: 554 aa      View alignments
>XP_004869066.1
MPTVDDVLEQVGEFGWFQKTIFLSLSLVSIALAPIYLGIVFLGFTPDHWCWNPGVAELSQRCGWSLAEELNYTVPGLAAENKAFLHQCMQYEVDWNQSTLSCIDPLSSLPYNRSRLPLVPCQHGWVYDIPGSSIVTEFNLVCADAWKVDLFQSCVNLGFFLGSLGIGYIADRFGRKLCLLGTALVTAVSGVLTAVAPDYISMVLFRLVQGMVSKGVWMSGYTLITEFVGSGYRRMVSILYQVAFTVGLVGLAGVAYAIPHWRWLQLAVSLPTFLFLLYYWCVPESPRWLLSQRRNTQAVKIMDYIAQKNGKLPPADLKMLSVEEDVTEKLSPSFVDLFRSPALRKYSLVLMYLWFSCAVLYQGLILHVGATGENHYLDFFYSSLVEFPAAFIMLVTIDRVGRIYPLAVSSLVAGAACLIMIFIPHDLRWLQILVACVGRMGTTIMLQMICLVNTELYPTFIRGLGMMMCSSLCDLGGIITPFIVYRLMEVWQALPLILFGVLSLTAGGMTLLLPETKGVSLPETIEDAENLQRKAKPKENTIYLQAQTSECEGT