Sequence details NCBI ID: XM_004866759.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol unclassified transcription discrepancy
Gene Name mRNA
Entrez Gene ID 101710916

Database interlinks

Part of NW_004624832.1 (Scaffold)

For more information consult the page for NW_004624832.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CLDND2 ENSCPOG00000000322 (Guinea pig)

Gene Details

claudin domain containing 2

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000000280, Guinea pig)

Protein Percentage 58.04%
CDS Percentage 74.36%
Ka/Ks Ratio 0.60292 (Ka = 0.2968, Ks = 0.4923)

CLDND2 ENSG00000160318 (Human)

Gene Details

claudin domain containing 2

External Links

Gene Match (Ensembl Protein ID: ENSP00000291715, Human)

Protein Percentage 66.47%
CDS Percentage 78.44%
Ka/Ks Ratio 0.19337 (Ka = 0.1815, Ks = 0.9388)

Cldnd2 ENSMUSG00000038973 (Mouse)

Gene Details

claudin domain containing 2

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000037980, Mouse)

Protein Percentage 61.08%
CDS Percentage 71.06%
Ka/Ks Ratio 0.23504 (Ka = 0.2622, Ks = 1.1154)

Cldnd2 ENSRNOG00000037333 (Rat)

Gene Details

claudin domain containing 2 (Cldnd2), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000053327, Rat)

Protein Percentage 62.28%
CDS Percentage 72.06%
Ka/Ks Ratio 0.22689 (Ka = 0.2514, Ks = 1.108)

Genome Location

Sequence Coding sequence

Length: 783 bp    Location: 3502303..3505660   Strand: +
Raw sequence   
>XM_004866759.1
ATGGTGTGGGTGGGAGGGGCACTGGACCGCAGAGGGGACTTTGCCCTGGAGGAGGGAGGTCCCTGGAAAGACAGGTTCCTCAGCTCTGCGGCTGGGGGAGGTCTCCAAGTCCCCTGTAGGAGGACTGGGGAATGGGGGGGGGTCACGTGTCCCCAGGCGGGGTTGCTAAGGGACCCGGATTGTGGAGGGAACTGGATTGTGGAGGGACCTGGGGTGGGCTCTGAGGGGGTCGGGTGTCAGCCTGTCCTACCTCTGTGGCCCGGCAGCAGCCTGCCTGGCATGGGAGTGAAGCGGAACCTGCAGGGCTGGGGCACTTTGCTCAGCCTCTTGGCCAACATCTTCACCATCCTGTCCACTGCAACCAACTACTGGATTCGCCAGCAGAAGGGGCACAGTGGCCTGTGGCTGGAGTGCACCCAGGGCCTGTGCTCCAACATCCCCTGCCAGACCACGATCTCATTGGCCGGGGCGTGCATGGTGCTGGCGGGTGGCGTCTGGGTGGTGGCCACGAAGGTGGCGTTGTGGATTCTGTGTCAGGGCGGACTATCGCTGCGGGGCCGGACTACAAGCACGCTGCTCTTCATCAGCGGGCTGCTGCTGCTGACGGCGCTGACCAGCTACACAGCGGGGAGTGAGAGGAAGGATGACGCCTTCTTCTCCTGGTCCTATTTTTCAGGGTGGCTGGCTTTACCTTTCTCTGTTCTCGCGGGCTGCTGCTTCCGGCTGGCGGACCTGATCCTGCAGAGCACCGAGGCCATCGGCGACTTCCCCGTGTGCCTGTGA

Related Sequences

XP_004866816.1 Protein

unclassified transcription discrepancy PREDICTED: LOW QUALITY PROTEIN: claudin domain-containing protein 2 [Heterocephalus glaber]

Length: 260 aa      View alignments
>XP_004866816.1
MVWVGGALDRRGDFALEEGGPWKDRFLSSAAGGGLQVPCRRTGEWGGVTCPQAGLLRDPDCGGNWIVEGPGVGSEGVGCQPVLPLWPGSSLPGMGVKRNLQGWGTLLSLLANIFTILSTATNYWIRQQKGHSGLWLECTQGLCSNIPCQTTISLAGACMVLAGGVWVVATKVALWILCQGGLSLRGRTTSTLLFISGLLLLTALTSYTAGSERKDDAFFSWSYFSGWLALPFSVLAGCCFRLADLILQSTEAIGDFPVCL