Sequence details NCBI ID: XM_004866097.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Pir
Gene Name pirin (iron-binding nuclear protein), transcript variant X4
Entrez Gene ID 101696483

Database interlinks

Part of NW_004624829.1 (Scaffold)

For more information consult the page for NW_004624829.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PIR ENSCPOG00000004034 (Guinea pig)

Gene Details

pirin (iron-binding nuclear protein)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000003639, Guinea pig)

Protein Percentage 95.52%
CDS Percentage 93.68%
Ka/Ks Ratio 0.11027 (Ka = 0.0228, Ks = 0.207)

PIR ENSG00000087842 (Human)

Gene Details

pirin (iron-binding nuclear protein)

External Links

Gene Match (Ensembl Protein ID: ENSP00000369786, Human)

Protein Percentage 96.21%
CDS Percentage 92.41%
Ka/Ks Ratio 0.0767 (Ka = 0.021, Ks = 0.2741)

Pir ENSMUSG00000031379 (Mouse)

Gene Details

pirin

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000033749, Mouse)

Protein Percentage 93.79%
CDS Percentage 88.97%
Ka/Ks Ratio 0.07632 (Ka = 0.034, Ks = 0.446)

Pir ENSRNOG00000003674 (Rat)

Gene Details

pirin (iron-binding nuclear protein) (Pir), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000004884, Rat)

Protein Percentage 94.14%
CDS Percentage 88.39%
Ka/Ks Ratio 0.06492 (Ka = 0.0324, Ks = 0.4987)

Genome Location

Sequence Coding sequence

Length: 873 bp    Location: 286302..181935   Strand: -
Raw sequence   
>XM_004866097.1
ATGGGCTCCTCGAAGAAGGTTACTCTCTTGGTGCTCAGCCGGGAGCAGTCTGAAGGGGTTGGAGCTCGGGTCCGCAGAAGCATCGGCAGACCCGAGTTAAAAAATCTGGATCCATTTTTACTGTTTGATGAGTTCAAAGGAGGTAGACCTGGAGGATTTCCTGATCACCCACATCGAGGTTTTGAAACAGTATCATACCTTCTGGAAGGGGGCAGCATGGCTCACGAGGACTTCTGTGGACACCGTGGTAAAATGAACCCAGGAGATCTGCAGTGGATGACTGCAGGCCGGGGCATTCTGCATGCAGAGATGCCATGCTCAGAGGAGCCAGCCCATGGCCTACAACTGTGGGTTAATTTGAAAAGTTCGGAGAAGATGGTGGAGCCTCGGTACCAGGAATTGAAAAGTGAAGAAATCCCTAAACCTAGTAAGGATGGTGTGACAGTTGCTGTCATTTCTGGAGAAGCTCTGGGAATAAAGTCCAAGATTTACACTCGCACACCAACCTTATATTTGGACTTCAAGTTGGACCAAGGAGCAAAGCATTCCCAGCCTATTCCTGAAGGATGGACAAGCTTCATTTATACCATATCTGGAGATGTGTACATCGGTCCTGATGATGAGCAACAGAAAATAGAACCTCATCACACAGCAGTGCTTGGAGAAGGTGACAGTGTCCAGGTGGAGAACAAGGATCCTGTGAGAAGCCATTTTGTCCTAATTGCTGGGGAGCCAATAAGAGAACCAGTTGTCCAACATGGTCCATTTGTGATGAACACCAATGAAGAAATTTCTCAGGCCATTCTTGATTTCAGAAATGCGAAAAATGGGTTTGAAAGGGCCAAAACCTGGAAATCAAAGATTGGAAACTAG

Related Sequences

XP_004866154.1 Protein

Pir PREDICTED: pirin isoform X4 [Heterocephalus glaber]

Length: 290 aa      View alignments
>XP_004866154.1
MGSSKKVTLLVLSREQSEGVGARVRRSIGRPELKNLDPFLLFDEFKGGRPGGFPDHPHRGFETVSYLLEGGSMAHEDFCGHRGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWVNLKSSEKMVEPRYQELKSEEIPKPSKDGVTVAVISGEALGIKSKIYTRTPTLYLDFKLDQGAKHSQPIPEGWTSFIYTISGDVYIGPDDEQQKIEPHHTAVLGEGDSVQVENKDPVRSHFVLIAGEPIREPVVQHGPFVMNTNEEISQAILDFRNAKNGFERAKTWKSKIGN