Sequence details NCBI ID: XM_004864167.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Pabpn1
Gene Name poly(A) binding protein, nuclear 1, transcript variant X1
Entrez Gene ID 101714601

Database interlinks

Part of NW_004624820.1 (Scaffold)

For more information consult the page for NW_004624820.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

ENSCPOG00000025574 (Guinea pig)

Gene Details

Uncharacterized protein

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000017334, Guinea pig)

Protein Percentage 100.0%
CDS Percentage 96.41%
Ka/Ks Ratio 0.001 (Ka = 0.0001, Ks = 0.1261)

Pabpn1 ENSMUSG00000022194 (Mouse)

Gene Details

poly(A) binding protein, nuclear 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000022808, Mouse)

Protein Percentage 97.35%
CDS Percentage 92.49%
Ka/Ks Ratio 0.05481 (Ka = 0.0147, Ks = 0.2688)

Pabpn1 ENSRNOG00000042195 (Rat)

Gene Details

poly(A) binding protein, nuclear 1 (Pabpn1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000021096, Rat)

Protein Percentage 97.68%
CDS Percentage 92.16%
Ka/Ks Ratio 0.03754 (Ka = 0.0114, Ks = 0.3027)

Genome Location

Sequence Coding sequence

Length: 921 bp    Location: 9232018..9227868   Strand: -
Raw sequence   
>XM_004864167.1
ATGGCGGCGGCGGCGGCGGCGGCAGCAGCAGCAGGGGCTGCGGGTGGTCGGGGCTCCGGGCCGGGGCGGAGGCGCCATCTTGTGCCCGGGGCCGGTGGGGAGGCCGGGGAGGGGGCCCCGGGGGGCGCAGGGGACTACGGGAACGGCGTGGAGTCTGAGGAACTGGAGCCTGGGGAGCTGCTGTTGGAGCCCGAGCCGGAACCCGAGCCCGAAGAGGAGCCGCCCCGGCCCCGCGCCCCCCCGGGAGCTCCTGGCCCTGGGCCTGGCTCGGGAGCCGCCGGTAGCCAAGAGGAGGAGGAAGAGCCGGGGCTTGTGGAGAGTGACCCGGGGGACGGCGCCATTGAGGACCCGGAGCTGGAAGCAATCAAAGCTCGAGTCAGGGAGATGGAGGAAGAAGCTGAGAAGCTAAAAGAGCTGCAGAACGAGGTAGAGAAGCAGATGAATATGAGTCCACCTCCAGGCAATGCTGGTCCAGTGATCATGTCTATCGAAGAGAGAATGGAGGCTGATGCTCGTTCCATCTATGTTGGCAATGTGGACTATGGTGCAACAGCAGAAGAGCTAGAAGCTCACTTTCATGGCTGTGGTTCAGTTAACCGTGTCACCATACTTTGTGACAAATTTAGTGGCCATCCCAAAGGGTTTGCCTATATAGAGTTCTCAGACAAAGAGTCAGTGAGGACTTCCCTGGCCTTAGACGAGTCCCTATTTAGAGGAAGACAAATCAAGGTGATCCCAAAACGAACCAATAGACCAGGCATCAGCACAACAGACCGAGGTTTCCCGCGTGCCCGCTATCGTGCCCGGACCACCAACTATAACAGTTCCCGCTCTCGATTCTACAGTGGTTTTAACAGCAGGCCCCGAGGTCGTGTCTACAGGGGCCGGGCTAGAGCGACATCATGGTATTCCCCTTACTAA

Related Sequences

XP_004864224.1 Protein

Pabpn1 PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Heterocephalus glaber]

Length: 306 aa      
>XP_004864224.1
MAAAAAAAAAAGAAGGRGSGPGRRRHLVPGAGGEAGEGAPGGAGDYGNGVESEELEPGELLLEPEPEPEPEEEPPRPRAPPGAPGPGPGSGAAGSQEEEEEPGLVESDPGDGAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEERMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTNYNSSRSRFYSGFNSRPRGRVYRGRARATSWYSPY