Sequence details NCBI ID: XM_004863220.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Serpinh1
Gene Name serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1), transcript variant X2
Entrez Gene ID 101700507

Database interlinks

Part of NW_004624817.1 (Scaffold)

For more information consult the page for NW_004624817.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SERPINH1 ENSCPOG00000022994 (Guinea pig)

Gene Details

serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000018271, Guinea pig)

Protein Percentage 97.37%
CDS Percentage 93.7%
Ka/Ks Ratio 0.0382 (Ka = 0.0117, Ks = 0.305)

SERPINH1 ENSG00000149257 (Human)

Gene Details

serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)

External Links

Gene Match (Ensembl Protein ID: ENSP00000434412, Human)

Protein Percentage 95.69%
CDS Percentage 90.35%
Ka/Ks Ratio 0.02633 (Ka = 0.0194, Ks = 0.7357)

Serpinh1 ENSMUSG00000070436 (Mouse)

Gene Details

serine (or cysteine) peptidase inhibitor, clade H, member 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000126390, Mouse)

Protein Percentage 95.44%
CDS Percentage 89.05%
Ka/Ks Ratio 0.02503 (Ka = 0.0204, Ks = 0.8151)

Serpinh1 ENSRNOG00000016831 (Rat)

Gene Details

serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1) (Serpinh1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000022983, Rat)

Protein Percentage 94.96%
CDS Percentage 88.65%
Ka/Ks Ratio 0.02705 (Ka = 0.0219, Ks = 0.8096)

Genome Location

Sequence Coding sequence

Length: 1257 bp    Location: 1570429..1561471   Strand: -
Raw sequence   
>XM_004863220.1
ATGCGCTGCCTCCTGCTACTTGGTACCTTCAGCCTCCTGGCGGTGGCCCTGGCAGCTGAGGTGAAGAAACCTGCAGCAGCGGCAGCTCCTGGCACTGCAGAGAAGCTGAGCTCCAAGGCAGCCACACTGGCCGAGCGCAGTGCCGGCCTGGCCTTCAGCCTGTACCAGGCCATGGCCAAGGACCAGGCAGTAGAAAATATCTTGCTGTCGCCCGTGGTGGTGGCCTCATCCCTGGGGTTGGTGTCACTGGGCGGCAAGGCAGCCACTGCATCACAGGCCAAAGCGGTGCTGAGCGCTGAGCAGCTGCGTGACGAGGAGGTGCATGCAGGCCTGGGTGAGCTGCTGCGGTCGCTCAGCAACTCCACGGCACGCAACGTGACCTGGAAACTAGGCAGCCGCCTGTATGGCCCCAGCTCAGTGAGCTTTGCTGACGACTTTGTGCGCAGCAGCAAGCAGCACTACAACTGTGAGCACTCCAAGATCAACTTCCGAGACAAGCGCACTGCACTGCAGTCCATCAATGAGTGGGCCGCGCAGACCACCGACGGCAAGCTGCCCGAGGTCACCAAGGATGTGGAGCGCACTGATGGTGCCCTGCTTGTCAACGCCATGTTCTTTAAGCCACACTGGGATGAGAAGTTCCACCACAAGATGGTGGACAACCGAGGCTTCATGGTGACTCGTTCCTATACTGTGGGAGTTACGATGATGCATCGGACAGGCCTCTACAACTACTATGACGATGAGAAGGAGAAGGTGCAGATCCTGGAGATGCCCCTGGCCCACAAGCTCTCCAGCCTCATCATCCTCATGCCCCACCACGTGGAGCCACTCGAGCGTCTTGAGAAGCTGCTGACAAAGGAGCAGCTGAAGGCCTGGACGGGGAAGCTGCAGAAGAAGGCTGTCGCCATCTCCCTGCCCAAGGGAGTGGTGGAGGTGACCCACGACCTGCAGAAACACCTGGCTGGGCTGGGCCTGACTGAGGCCATCGACAAGAACAAGGCAGACTTGTCCCGCATGTCAGGCAAGAAGGACCTGTACCTGGCCAGCGTGTTCCATGCCACTGCCTTCGAGTGGGACACAGAGGGCAACCCCTTTGACCAGGACATCTATGGGCGGGAGGAGCTGCGCAGCCCGAAGTTGTTCTACGCCGATCACCCTTTCATCTTCCTGGTTCGAGACACCCAGAGCGGCTCCCTGCTGTTCATTGGGCGCCTGGTACGGCCCAAGGGCGACAAGATGCGAGATGAGTTGTAA

Related Sequences

XP_004863277.1 Protein

Serpinh1 PREDICTED: serpin H1 isoform X2 [Heterocephalus glaber]

Length: 418 aa      View alignments
>XP_004863277.1
MRCLLLLGTFSLLAVALAAEVKKPAAAAAPGTAEKLSSKAATLAERSAGLAFSLYQAMAKDQAVENILLSPVVVASSLGLVSLGGKAATASQAKAVLSAEQLRDEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFADDFVRSSKQHYNCEHSKINFRDKRTALQSINEWAAQTTDGKLPEVTKDVERTDGALLVNAMFFKPHWDEKFHHKMVDNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKVQILEMPLAHKLSSLIILMPHHVEPLERLEKLLTKEQLKAWTGKLQKKAVAISLPKGVVEVTHDLQKHLAGLGLTEAIDKNKADLSRMSGKKDLYLASVFHATAFEWDTEGNPFDQDIYGREELRSPKLFYADHPFIFLVRDTQSGSLLFIGRLVRPKGDKMRDEL