Sequence details NCBI ID: XM_004862479.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Sim1
Gene Name single-minded homolog 1 (Drosophila)
Entrez Gene ID 101711620

Database interlinks

Part of NW_004624810.1 (Scaffold)

For more information consult the page for NW_004624810.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SIM1 ENSCPOG00000013987 (Guinea pig)

Gene Details

single-minded homolog 1 (Drosophila)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000012604, Guinea pig)

Protein Percentage 96.61%
CDS Percentage 93.86%
Ka/Ks Ratio 0.07024 (Ka = 0.0161, Ks = 0.2299)

SIM1 ENSG00000112246 (Human)

Gene Details

single-minded homolog 1 (Drosophila)

External Links

Gene Match (Ensembl Protein ID: ENSP00000358210, Human)

Protein Percentage 97.65%
CDS Percentage 91.95%
Ka/Ks Ratio 0.02961 (Ka = 0.0112, Ks = 0.3779)

Sim1 ENSMUSG00000019913 (Mouse)

Gene Details

single-minded homolog 1 (Drosophila)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000020071, Mouse)

Protein Percentage 96.34%
CDS Percentage 88.1%
Ka/Ks Ratio 0.03164 (Ka = 0.0192, Ks = 0.6073)

Sim1 ENSRNOG00000037600 (Rat)

Gene Details

single-minded homolog 1 (Drosophila) (Sim1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000053843, Rat)

Protein Percentage 96.08%
CDS Percentage 87.45%
Ka/Ks Ratio 0.03218 (Ka = 0.021, Ks = 0.6534)

Genome Location

Sequence Coding sequence

Length: 2301 bp    Location: 4479598..4558434   Strand: +
Raw sequence   
>XM_004862479.1
ATGAAAGAAAAGTCCAAAAATGCTGCTCGGACTAGGAGGGAGAAGGAAAACAGTGAATTTTATGAACTGGCTAAATTATTGCCTTTGCCCTCCGCTATCACCTCGCAGCTGGACAAAGCATCCATCATCAGACTCACCACCAGTTATCTCAAAATGAGAGTGGTGTTTCCAGAAGGGCTAGGGGAGGCGTGGGGCCACTCAAGTCGCACAAGTCCCCTGGACAACGTTGGCCGTGAACTGGGCTCCCATCTTCTTCAGACGTTGGATGGCTTCATCTTTGTGGTGGCCCCAGATGGGAAGATCATGTACATCTCAGAGACAGCCTCAGTTCACCTGGGTCTTTCTCAGGTAGAGCTGACTGGAAATAGCATTTATGAATACATTCACCCAGCAGACCACGATGAGATGACGGCAGTGCTCACTGCACACCAGCCCTACCACTCTCACTTCGTGCAGGAGTATGAGATCGAGCGCTCCTTCTTCCTGAGGATGAAGTGCGTCTTGGCTAAGCGGAACGCTGGACTCACTTGCGGTGGCTACAAGGTCATTCACTGCAGCGGCTACCTGAAGATCCGCCAGTACAGCCTGGACATGTCTCCCTTCGACGGCTGCTACCAGAACGTGGGCCTGGTGGCCGTGGGCCACTCGCTGCCTCCTAGCGCGGTCACCGAGATCAAGCTGCACAGCAACATGTTCATGTTCCGCGCTAGCCTCGACATGAAGCTCATCTTCCTAGACTCTAGGGTGGCGGAGCTGACGGGTTACGAACCTCAGGACCTGATCGAGAAGACCCTGTACCACCACGTGCACGGCTGCGACACCTTCCACCTGCGCTGCGCGCACCACCTGCTGCTGGTGAAGGGGCAGGTGACCACCAAGTACTACAGGTTCCTGGCGAAACATGGCGGCTGGGTTTGGGTGCAGAGCTACGCGACCATCGTGCACAACAGCCGCTCGTCCCGGCCGCACTGCATCGTCAGCGTCAACTACGTCCTCACAGACACAGAGTACAAGGGGCTGCAGCTCTCCCTGGATCAGATCTCAGCATCCAAACCAGCCTTCTCCTATGCTAGCAGCTCCACCCCCACTCTAACTGATAACAGGAAGGGGTCCAAGTCAAGGCTGTCCAGTTCAAAGTCAAAATCCAGGACTTCCCCTTACCCTCAGTATTCGGGATTTCACACGGAAAGATCGGAATCAGATCATGACAGCCAGTGGGGCGGAAGTCCCCTGACCGACACGGCCTCTCCGCAGCTCCTGGACCCAGCCGAGCGCCCAGGCTTGCAGCACGATGCGTCCTGCGCCTACAGGCAGTTCTCGGACCGCAGCTCGCTCTGTTACGGCTTCGCGCTCGACCACTCCCGGCTGGTGGAGGACCGGCACTTCCACAGCCAGGCCTGTGAGGGAGGCCGCTGCGAGGCGGGCAGGTACTTCCTGGGAGCGCCGCAGGCCGGGAGGGAGCCCTGGTGGGGCTCTCGCGCAGCCTTGCCGCTGACCAAGGCCTCCCCGGAGAGCAGGGAAGCCTACGAGAACAGCATGCCACACATCGCCTCGGTGCACAGGACCCACGGGAGAAGTCATTGGGATGAAGATAGTGTGGTCAGCTCTCCAGACCCAGGGTCGGCCAGTGAATCAGGTGACCGATATCGCACTGAACAGTATCAGAGTAGCCCACATGAACCTAGCAAAATTGAAACTCTGATAAGAGCTACCCAGCAAATGATTAAAGAAGAAGAAAACAGATTGCAGTTAAGGAAAGGCCCCCCAGACCAACTGGCTTCCATTAATGGAGCAGGGAAAAAACACTCCCTCTGTTTTGCAAACTATTCCCAGCCCCCACCTACAGGGGAAGTCTGCCACAGCTCTGCTCTGGCCAACACTTCACCATGTGACCACATCCAGCAGAGAGAGGGAAAGATGCTGAGTCCTCATGACAATGACTATGACAATAGTCCCACTGCACTGTCTCGGATAAGTAGTCCCAATTCTGATCGCATTTCAAAATCCAGTTTGATTCTGGCTAAAGATTATCTACATTCGGATATGTCTCCTCATCAAACAGCAGGAGACCATGCTGCTGTTTCTCCAAACTGCTTTGGCTCTCACCGGCAGTATTTTGATAAGCATGCTTACACATTAACTGGATATGCCCTCGAGCACTTATATGACAGTGAAACCATTAGAAACTATTCCTTGGGCTGTAATGGCTCACACTTTGATGTAACTTCCCATCTGAGGATGCAGCCAGACCCAGCACAAGGACATAAGGGAACATCTGTTATAATAACCAATGGAAGCTGA

Related Sequences

XP_004862536.1 Protein

Sim1 PREDICTED: single-minded homolog 1 [Heterocephalus glaber]

Length: 766 aa      View alignments
>XP_004862536.1
MKEKSKNAARTRREKENSEFYELAKLLPLPSAITSQLDKASIIRLTTSYLKMRVVFPEGLGEAWGHSSRTSPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVELTGNSIYEYIHPADHDEMTAVLTAHQPYHSHFVQEYEIERSFFLRMKCVLAKRNAGLTCGGYKVIHCSGYLKIRQYSLDMSPFDGCYQNVGLVAVGHSLPPSAVTEIKLHSNMFMFRASLDMKLIFLDSRVAELTGYEPQDLIEKTLYHHVHGCDTFHLRCAHHLLLVKGQVTTKYYRFLAKHGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLTDTEYKGLQLSLDQISASKPAFSYASSSTPTLTDNRKGSKSRLSSSKSKSRTSPYPQYSGFHTERSESDHDSQWGGSPLTDTASPQLLDPAERPGLQHDASCAYRQFSDRSSLCYGFALDHSRLVEDRHFHSQACEGGRCEAGRYFLGAPQAGREPWWGSRAALPLTKASPESREAYENSMPHIASVHRTHGRSHWDEDSVVSSPDPGSASESGDRYRTEQYQSSPHEPSKIETLIRATQQMIKEEENRLQLRKGPPDQLASINGAGKKHSLCFANYSQPPPTGEVCHSSALANTSPCDHIQQREGKMLSPHDNDYDNSPTALSRISSPNSDRISKSSLILAKDYLHSDMSPHQTAGDHAAVSPNCFGSHRQYFDKHAYTLTGYALEHLYDSETIRNYSLGCNGSHFDVTSHLRMQPDPAQGHKGTSVIITNGS