Sequence details NCBI ID: XM_004861484.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Col4a6
Gene Name collagen, type IV, alpha 6
Entrez Gene ID 101710396

Database interlinks

Part of NW_004624803.1 (Scaffold)

For more information consult the page for NW_004624803.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

COL4A6 ENSCPOG00000015073 (Guinea pig)

Gene Details

collagen, type IV, alpha 6

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000013587, Guinea pig)

Protein Percentage 87.43%
CDS Percentage 90.28%
Ka/Ks Ratio 0.42052 (Ka = 0.0752, Ks = 0.1788)

COL4A6 ENSG00000197565 (Human)

Gene Details

collagen, type IV, alpha 6

External Links

Gene Match (Ensembl Protein ID: ENSP00000361290, Human)

Protein Percentage 80.17%
CDS Percentage 84.39%
Ka/Ks Ratio 0.43559 (Ka = 0.1338, Ks = 0.3073)

Col4a6 ENSMUSG00000031273 (Mouse)

Gene Details

collagen, type IV, alpha 6

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000098765, Mouse)

Protein Percentage 78.24%
CDS Percentage 82.46%
Ka/Ks Ratio 0.40451 (Ka = 0.15, Ks = 0.3709)

Col4a6 ENSRNOG00000018856 (Rat)

Gene Details

collagen, type IV, alpha 6

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000047702, Rat)

Protein Percentage 74.64%
CDS Percentage 79.95%
Ka/Ks Ratio 0.46316 (Ka = 0.1902, Ks = 0.4107)

Genome Location

Sequence Coding sequence

Length: 4980 bp    Location: 8240020..8334725   Strand: +
Raw sequence   
>XM_004861484.1
ATGGCTGACCACTTGGGAGGCTGTGGCAACTTTCTAGAGGAGAGAAGAAGAAAACCTGAAGGAAGACCCGGACCAGTTGGAATTCAAGGTCCCACTGGTCCTGAAGGATTTGTTGGACCTACTGGTTTATCAGGGTTGAAAGGAGAAAAGGGTTCCCCAGGCCCTCTGGGTCCATATGGACCAAAAGGAGATAAGGGTCCCATAGGAGTTCCTGGCTTTCTTGGCATCAATGGGATTCCGGGCCAACCTGGACACCCAGGCCCAAGAGGTCCACCTGGCCTGGATGGTTGTAACGGAACTAAAGGAGCTGTTGGATTTCCAGGCCCTGATGGCTATCCTGGGATTCGTGGACTGCCTGGGCTTCCTGGTCGGAAAGGTTCAAAAGGTGAACCCATTCTTTCTCAAGTCAGTTTCACAGGAATGAAGGGGAATCCTGGGTTGCCTGGACTGGATGGAATCATGGGCCCACAAGGACCACCTGGAACTCCTGGAGATGCAGGACCCATGGGGCTACTAGGATTGCAAGGTCCTTCAGGCCCCCCTGGTTTCCCTGGTCCTGATGGAAATATGGGGTTAGGTTTCCAAGGAGAAAAAGGAGTCAAGGGCGATGTTGGCCTCCCTGGCCCCGCAGGACCACTACCATCTACTGGGGAACTAGAATTCATGGGTGTCCCCAAAGGGAAGAAGGGATGCAAGGGTGAACCAGGACCTCCGGGTCTCCCAGGAATGATCGGCCCTTCAGGCTTCCAGAAATTTGGATCTACTGAAGAAAAAGGTGAAAAAGGAATCCTTGGCTTGCCAGGACCTAGGGGTCCCATGGGTTCAGAAGGAGTGCCAGGCTCTTCAGGGACAAAGGGCAAGAAGGGGTCTCCAGGTATTCCTGGGCTTAATGGATTCCCAGGAATTAAGGGTGAAAAAGGTGGTATTGGCCTGCCAGGGCCAGATGTTTTCACGAGTGCAGATGGTGCTATGATCTCAGGTTATCCTGGAGACCCCGGTGTGCCAGGCACCCCAGGTTTTAAAGGAGATGAAGGCATCCAGGGCCAACGTGGCCCTTCTGGCATCCCTGGCCTTCCAGCCTTACCAGGTGTGCCAGGTGCCATAGGGCCTCAGGGATTTCCAGGTCTGAAGGGGGACCTAGGAAAGTCAGGCCACACCACAATTGGAGGAGCTGGCCTTCCTGGCAGAATTGGTTTCCCAGGCCTACCAGGTCTACCAGGCCCACCTGGTCCACCATCTAAGATTGGAACTCTACATGGCACAGGGCCAGGATTTCCTGGTCTCCGAGGAGAACAAGGTCTAAAAGGAAACCCAGGCCGCAAAGGAGTAAAAGGGGACTCGGGTTTTTGTGCTTGTGATGGTGGTGTCCCCAGCCCTGGACCACCTGGGAAACCAGGCCTGCCTGGGCCACAAGGTCTGATGGGCTTTCCAGGCCTTAAAGGAACCAGAGGAGATGCAGGCTCTGAGGGTGCACAGGGCCCAGCAGGGGCTCCAGGTTCATTTGGACAACAAGGTCTTACAGGTGCCAAAGGAAAGAAAGGTGAACCAACTATCAGTACAGGATCAGGGATTACAGGGGAGAAGGGTGATCCTGGCCCCCAGGGGTTCCCTGGTATAACAGGAGCCCCAGGCAAGGATGGAGTACCAGGTTTACCAGGTCTGCCAGGTATTCAAGGTGATGGTGAACAGGGCTTCCCAGGTGAAAAAGGACTACCAGGACTTCCTGGTGAAAAAGGCCATCCTGGTCCAACTGGTCCCCCAGGAATTGGGCTTCCAGGACTTCCTGGACCTCATGGGCCCCCTGGAGATAAAGGAATAGATGGGTTACCAGGGCAACAAGGCCTCCATGGATCTCCAGGAATCACCTTGCCTTGTATTATTCCTGGGTCATATGGTCCATCAGGATTACCAGGAGCTCCTGGATTCCCAGGACCTAAAGGGGTCCGTGGACTCCCTGGGACTCCAGGCCAGCCTGGATCTCATGGAAACAAAGGAGAGCCTGGAAGTCCAGGATTACTTCATCTCACTAAATTACCAGGATTTTCTGGACCTCATGGGGAGAAGGGCTTGCCTGGGTTTCCTGGGCTTCCTGGAAAAGATGGCTTGCCTGGGAAGGTTGGCAGTCCAGGTTTACCAGGTTTCAAGGGAGCCCCCGGTGACATCTTTGATGCTGAAAATGGTGCTTCGGGGGCTCACGGCCTACAGGGATTGCCAGGGGACAGAGGATTTCCTGGAGACTCTGGCCCTCAAGGACCCATGGGTTTACACGGGCAGCCTGGCTTGCTAGGCCCCAAGGGTGACTGGGGCAGCCCTGGAGCATCAGGACAAGTGGGACAGCCAGGCCCTCCAGGGTCTACTGGCCCGCATGGCATCAAAGGCAAATCTGGGCTCCCAGGAGTACCAGGCCTTCCAGGCATTTCAGGATATCCTGGAAAAAAAGGTCCAAAAGGCAACAAAGGCCTCCCTGGATCAACTAGAAAAAGAGGTCTACCTGGGATGAAAGGCCTTCCTGGATCACCTGGGCTAACTGGCTTCCTGGGGGGTCCAGGCTTGCCAGGGGTTACTGGGTTGCCAGGCCTCCCAGGTCCAAAGGGTGAGAAGGGGTCCATTGGACTAGTAGGTTTTCCAGGAATACAAGGTCTCCCTGGTTTTCCTGGTGCAAGTGGATTAAAGGGAATTCCTGGGTCAGCTGGAAAAGTGGGAACATCTGGATGGGCTGGAAGTACAGGTGAAAAGGGAGACAGAGGTGATCCAGGCCCAGTTGGAGTACCCAGTCCAAGACCTCCAATGCTGAGCCTATGGTTCAAAGGAGACAAAGGCTCTCAGGGATCGGCTGGATCCGATGGATTTCCAGGGCCCAGAGGTGACAAAGGAGAGGCTGGGCGCCCAGGATCACCAGGCCTGCCTGGAGCTCCTGGCTTCCCCAGCACCATCAAAGGACTTAGTGGGATGCCAGGTCTCCCTGGCTCCACGGGGCTTCAGGGCTTACCTGGCCTGAAGGGCTCCTCAGGAATCACAGGATTTCCAGGAATGCCAGGAGAAAGTGGTTCACAGGGTCTCACTGGGGCTCCTGGACTCCCAGGGCCATCTGGTCTCCCAGGCTCAAAAGGCGATCAGGGCCAGATGTTTGAAATTTCTGGTAGTCCAGGACCCAAGGGACAGCCTGGTGAACTGGGTATTAAAGGTGTGAAAGGAAAAGATGGACTGGTTGGTGATGTTGGTTTCCCAGGAAACAAAGGTGAAGATGGGAAAGCTGGTATTTCTGGAGATGTTGGCCTTTCTGGCTCCCCAGGACTTCCAGGGACTGGAGGTATCAGAGGAGACCCAGGATTTCCAGGTTCCTCTGGTCATTCAGGGGCCCCTGGGCCCCTGGGGCCCTCAGGGTTAATCGGACCCAAAGGATTCTCTGGACCTCCCGGTTTAAATGGACTGAATGGCCTTCCAGGCACCAAGGGTAACCGCGGCACCCCAGGAGCCAGTATCACAGGTGTGCCTGGGCCTGCTGGCCTGCCTGGTCCCAAAGGGGAAAAGGGAACACCAGGAACTGTCATTGGAGATCCAGGGAATCCAGGTCCAAGAGGACAAAAAGGTGGCCGAGGTTTCCCAGGTTTACAAGGCCCTGCTGGCCCCCCTGGTGCCCAAGGCATCTCCTTGTCTTCCGTCATAGCAGGACAGCCTGGCCAGCCTGGGCAATCAGGCCTAGATGGAGAACGAGGCCGCCCAGGCCACCAAGGGCCCCCAGGTCCCCCTGGGCCATCCTCAGATCAAGGCGACCTTGGAGACCCTGGATTCCCTGGAATTCCTGGCCTTCCAGGGCCCAAGGGAGACCAAGGCATTCTAGGTTTCTCTGGCCTCCCTGGAGAGCTAGGACTGAAAGGCATGAAAGGTGAACCTGGCTTCATGGGGACTCCAGGCAAGGTTGGGCCACCTGGAGACCCAGGATTACCTGGGATGAAGGGGAAGGCAGGACCACAAGGCTCTCCAGGCCTTCAAGGCGCTCCTGGGAAAACACCAGTTGTGGAAGCTATCCAGGTTCCTCCTGGTCCCCTGGGTCAACCAGGCATCAGTGGCATTCCTGGTGTTACAGGGGACCCTGGGACCCAAGGTCCTGTTGGTCTACGAGGTACCAAAGGTTTACCTGGAATCCCTGGCAAGGATGGCCTCAGCGGGCTTCCAGGCCCACCTGGGACTCTTGGGGATCCTGGTCTCCCTGGACTGCAAGGCCCCCCAGGATTTGAAGGAGCTCCAGGGAAGCCAGGCCCCTCCGGGAGCCCTGGGAGGCCTGGGCACAGCGTGAGAGTGGGCTACACATTGGTGAAGCACAGCCAGTCCGAACAGGTGCCCCTGTGCCCCATCGGGATGAGCCAGCTGTGGGTGGGTTACAGCTTGCTGTTCGTGGAGGGCCAGGAGAAAGCCCACAACCAAGACCTAGGGTTTGCTGGCTCCTGTCTGCCCCGCTTCAGCACCATGCCTTTCATTTACTGCAACATCAATGAAGTGTGCCACTATGCCCGACGCAATGATAAGTCCTACTGGCTTTCCACTACTGCCCCCATTCCCATGATGCCCGTCAGCCAGGCCCAGATTCCCCAGTATATCAGCCGCTGCTCTGTGTGTGAGGCACCATCGCCAGCCATTGCCATACACAGCCAGGATGTCACCATCCCACAGTGCCCTCTGGGCTGGAAAAGCCTCTGGATTGGGTACTCCTTCCTCATGCACACTGCCACTGGGGCCGAGGGTGGAGGCCAGTCTTTGGTTTCTCCAGGCTCCTGCCTTGAGGATTTCCAGGCCACTCCTTTCATCGAGTGCAGTGGTGCCCAAGGCACCTGCCACTACTTTGCTAACAAGTACAGTTTCTGGTTGACGACAGTAGAGGAAAGGCAACAGTTTAGGGAAGAACCTGTGTCAGAAACGCTGAAAGCTGGACAGCACCATACCCGGGTTAGCCGCTGCCAGGTGTGTATGAAAAACCTGTAG

Related Sequences

XP_004861541.1 Protein

Col4a6 PREDICTED: collagen alpha-6(IV) chain [Heterocephalus glaber]

Length: 1659 aa      View alignments
>XP_004861541.1
MADHLGGCGNFLEERRRKPEGRPGPVGIQGPTGPEGFVGPTGLSGLKGEKGSPGPLGPYGPKGDKGPIGVPGFLGINGIPGQPGHPGPRGPPGLDGCNGTKGAVGFPGPDGYPGIRGLPGLPGRKGSKGEPILSQVSFTGMKGNPGLPGLDGIMGPQGPPGTPGDAGPMGLLGLQGPSGPPGFPGPDGNMGLGFQGEKGVKGDVGLPGPAGPLPSTGELEFMGVPKGKKGCKGEPGPPGLPGMIGPSGFQKFGSTEEKGEKGILGLPGPRGPMGSEGVPGSSGTKGKKGSPGIPGLNGFPGIKGEKGGIGLPGPDVFTSADGAMISGYPGDPGVPGTPGFKGDEGIQGQRGPSGIPGLPALPGVPGAIGPQGFPGLKGDLGKSGHTTIGGAGLPGRIGFPGLPGLPGPPGPPSKIGTLHGTGPGFPGLRGEQGLKGNPGRKGVKGDSGFCACDGGVPSPGPPGKPGLPGPQGLMGFPGLKGTRGDAGSEGAQGPAGAPGSFGQQGLTGAKGKKGEPTISTGSGITGEKGDPGPQGFPGITGAPGKDGVPGLPGLPGIQGDGEQGFPGEKGLPGLPGEKGHPGPTGPPGIGLPGLPGPHGPPGDKGIDGLPGQQGLHGSPGITLPCIIPGSYGPSGLPGAPGFPGPKGVRGLPGTPGQPGSHGNKGEPGSPGLLHLTKLPGFSGPHGEKGLPGFPGLPGKDGLPGKVGSPGLPGFKGAPGDIFDAENGASGAHGLQGLPGDRGFPGDSGPQGPMGLHGQPGLLGPKGDWGSPGASGQVGQPGPPGSTGPHGIKGKSGLPGVPGLPGISGYPGKKGPKGNKGLPGSTRKRGLPGMKGLPGSPGLTGFLGGPGLPGVTGLPGLPGPKGEKGSIGLVGFPGIQGLPGFPGASGLKGIPGSAGKVGTSGWAGSTGEKGDRGDPGPVGVPSPRPPMLSLWFKGDKGSQGSAGSDGFPGPRGDKGEAGRPGSPGLPGAPGFPSTIKGLSGMPGLPGSTGLQGLPGLKGSSGITGFPGMPGESGSQGLTGAPGLPGPSGLPGSKGDQGQMFEISGSPGPKGQPGELGIKGVKGKDGLVGDVGFPGNKGEDGKAGISGDVGLSGSPGLPGTGGIRGDPGFPGSSGHSGAPGPLGPSGLIGPKGFSGPPGLNGLNGLPGTKGNRGTPGASITGVPGPAGLPGPKGEKGTPGTVIGDPGNPGPRGQKGGRGFPGLQGPAGPPGAQGISLSSVIAGQPGQPGQSGLDGERGRPGHQGPPGPPGPSSDQGDLGDPGFPGIPGLPGPKGDQGILGFSGLPGELGLKGMKGEPGFMGTPGKVGPPGDPGLPGMKGKAGPQGSPGLQGAPGKTPVVEAIQVPPGPLGQPGISGIPGVTGDPGTQGPVGLRGTKGLPGIPGKDGLSGLPGPPGTLGDPGLPGLQGPPGFEGAPGKPGPSGSPGRPGHSVRVGYTLVKHSQSEQVPLCPIGMSQLWVGYSLLFVEGQEKAHNQDLGFAGSCLPRFSTMPFIYCNINEVCHYARRNDKSYWLSTTAPIPMMPVSQAQIPQYISRCSVCEAPSPAIAIHSQDVTIPQCPLGWKSLWIGYSFLMHTATGAEGGGQSLVSPGSCLEDFQATPFIECSGAQGTCHYFANKYSFWLTTVEERQQFREEPVSETLKAGQHHTRVSRCQVCMKNL