Sequence details NCBI ID: XM_004861377.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Bloc1s1
Gene Name biogenesis of lysosomal organelles complex-1, subunit 1, transcript variant X2
Entrez Gene ID 101700725

Database interlinks

Part of NW_004624802.1 (Scaffold)

For more information consult the page for NW_004624802.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

ENSCPOG00000001818 (Guinea pig)

Gene Details

Uncharacterized protein

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000001646, Guinea pig)

Protein Percentage 100.0%
CDS Percentage 94.93%
Ka/Ks Ratio 0.001 (Ka = 0.0002, Ks = 0.2324)

RP11-644F5.10 ENSG00000258311 (Human)

Gene Details

Uncharacterized protein

External Links

Gene Match (Ensembl Protein ID: ENSP00000447650, Human)

Protein Percentage 95.74%
CDS Percentage 91.49%
Ka/Ks Ratio 0.07776 (Ka = 0.0298, Ks = 0.3837)

Bloc1s1 ENSMUSG00000090247 (Mouse)

Gene Details

biogenesis of lysosome-related organelles complex-1, subunit 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000026405, Mouse)

Protein Percentage 99.2%
CDS Percentage 91.47%
Ka/Ks Ratio 0.00651 (Ka = 0.0035, Ks = 0.536)

Bloc1s1 ENSRNOG00000007784 (Rat)

Gene Details

biogenesis of lysosomal organelles complex-1, subunit 1 (Bloc1s1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000010380, Rat)

Protein Percentage 100.0%
CDS Percentage 91.73%
Ka/Ks Ratio 0.001 (Ka = 0.0006, Ks = 0.6289)

Genome Location

Sequence Coding sequence

Length: 378 bp    Location: 12304338..12300397   Strand: -
Raw sequence   
>XM_004861377.1
ATGCTGTCTCGCCTGCTCAAAGAACACCAGGCCAAGCAGAACGAACGCAAGGAGCTTCAGGAAAAGAGGAGGCGAGAAGCTATCACTGCTGCGACCTGCCTGACAGAAGCTTTGGTGGACCACCTCAATGTGGGTGTGGCCCAGGCTTACATGAACCAAAGAAAGCTGGACCATGAAGTGAAGACCCTGCAGGTCCAGGCTGCCCAGTTTGCCAAACAGACAGGCCAGTGGATCGGGATGGTGGAGAACTTCAACCAGGCGCTCAAGGAAATCGGGGATGTGGAGAATTGGGCTCGGAGCATTGAGCTGGACATGCGAACCATTGCCACCGCCCTGGAGTACGTCTACAAAGGGCAGCTGCAATCTGCCCCCTCCTAG

Related Sequences

XP_004861434.1 Protein

Bloc1s1 PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 isoform X2 [Heterocephalus glaber]

Length: 125 aa      View alignments
>XP_004861434.1
MLSRLLKEHQAKQNERKELQEKRRREAITAATCLTEALVDHLNVGVAQAYMNQRKLDHEVKTLQVQAAQFAKQTGQWIGMVENFNQALKEIGDVENWARSIELDMRTIATALEYVYKGQLQSAPS