Details from NCBI annotation

Gene Symbol Shmt2
Gene Name serine hydroxymethyltransferase 2 (mitochondrial), transcript variant X4
Entrez Gene ID 101721429

Database interlinks

Part of NW_004624802.1 (Scaffold)

For more information consult the page for NW_004624802.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SHMT2 ENSCPOG00000012840 (Guinea pig)

Gene Details

serine hydroxymethyltransferase 2 (mitochondrial)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000011559, Guinea pig)

Protein Percentage 96.03%
CDS Percentage 92.99%
Ka/Ks Ratio 0.08286 (Ka = 0.0194, Ks = 0.2336)

SHMT2 ENSG00000182199 (Human)

Gene Details

serine hydroxymethyltransferase 2 (mitochondrial)

External Links

Gene Match (Ensembl Protein ID: ENSP00000333667, Human)

Protein Percentage 95.04%
CDS Percentage 91.73%
Ka/Ks Ratio 0.0971 (Ka = 0.0278, Ks = 0.2862)

Shmt2 ENSMUSG00000025403 (Mouse)

Gene Details

serine hydroxymethyltransferase 2 (mitochondrial)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000026470, Mouse)

Protein Percentage 93.65%
CDS Percentage 87.43%
Ka/Ks Ratio 0.06147 (Ka = 0.0345, Ks = 0.5616)

Shmt2 ENSRNOG00000008106 (Rat)

Gene Details

serine hydroxymethyltransferase 2 (mitochondrial) (Shmt2), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000011082, Rat)

Protein Percentage 93.65%
CDS Percentage 87.7%
Ka/Ks Ratio 0.06688 (Ka = 0.0349, Ks = 0.5223)

Genome Location

Sequence Coding sequence

Length: 1515 bp    Location: 10718367..10713276   Strand: -
>XM_004861248.1
ATGCTACCCTTGTCTTTGTTCTGTGCAGTGCGGCCCCTGCAGAGATGTGGTCAGCTGGTTGAGATGGCTGCTCGGGCTCAGCACAGCAAGGCAGCCCAGACTCAGACCGGGGAAGCAACTCAGGGCTGGACAGGCCAGGAGAGTCTCTCGGACAGTGACCCAGAGATGTGGGAGCTGCTGCAGAAGGAGAAGGACAGGCAGTGCCGTGGCCTGGAGCTCATTGCCTCAGAGAACTTCTGCAGCCGAGCTGCGCTGGAGGCCCTGGGGTCCTGTCTGAACAACAAGTACTCGGAGGGTTATCCTGGCAAGAGATATTACGGGGGAGCAGAGGTAGTGGATAAAATCGAGCTGCTGTGCCAGCGTCGAGCCTTGGAAGCCTTTGACCTGGATCCTACACAGTGGGGAGTCAATGTCCAGCCCTATTCAGGCTCCCCAGCCAATCTGGCCACCTACACAGCCCTTCTGCAGCCTCATGACCGGATCATGGGGCTGGACCTGCCCGATGGGGGCCATCTCACCCATGGCTACATGTCTGATGTCAAGCGGATCTCTGCCACATCCATCTTCTTCGAGTCTATGCCCTATAAGCTCAATCCCCAAACTGGCCTCATTGACTATGACCAGCTGGCACTGACTGCTCGACTTTTCCGACCACGGCTCATTATTGCTGGTACCAGTGCTTATGCTCGCCTCATTGACTACGCCCGCATGAGAGAGGTGTGTGATGAGGTCAAGGCACACCTGCTGGCAGACATGGCCCACATCAGTGGCTTGGTGGCTGCCAAGGTGATTCCCTCACCCTTCAAGTATTCGGACATTGTCACCACTACCACTCACAAGACTCTTCGAGGGGCCAGGTCAGGACTCATCTTCTACAGGAAGGGGGTACGGGCTGTGGACCCTAAGACTGGCCGGGAGATCCCTTACACATTTGAGGATCGAATCAACTTCGCCGTGTTCCCATCCCTGCAAGGGGGCCCTCACAACCATGCCATTGCTGCAGTAGCTGTGGCCCTCAAGCAGGCCTCTACCCCCATGTTCCGGGAGTACTCCCTGCAGGTTTTGAAGAATGCTCGGGCCATGGCTGATGCCCTCCTAGATCGAGGCTACTCATTGGTGTCTGGTGGCACTGACAACCACCTGGTGCTCGTAGACCTACGGCCCAAGGGCTTGGATGGAGCTCGGGCTGAGCGAGTCCTGGAGCTCGTGTCCATCACTGCCAACAAGAACACCTGTCCTGGAGACCGAAGTGCCATCACCCCTGGGGGTCTGCGACTTGGGGCCCCAGCCTTGACTTCTCGACAGTTCCGTGAGGATGACTTCCGGAGAGTTGTAGACTTTATTGATGAAGGGGTCAACATTGGATTGGAGGTGAATAGCAAGACTGCCAAGCTCCAGGATTTCAAATCCTTCCTGCTCAAGGACCCAGAAACAATCCAGCATCTGGCCAACCTCAGGCAACGGGTAGAGCAGTTTGCCAGGGCCTTCCCTATGCCTGGTTTTGATGAACGCTGA

Related Sequences

XP_004861305.1 Protein

Shmt2 PREDICTED: serine hydroxymethyltransferase, mitochondrial isoform X4 [Heterocephalus glaber]

Length: 504 aa      View alignments
>XP_004861305.1
MLPLSLFCAVRPLQRCGQLVEMAARAQHSKAAQTQTGEATQGWTGQESLSDSDPEMWELLQKEKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDKIELLCQRRALEAFDLDPTQWGVNVQPYSGSPANLATYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPQTGLIDYDQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKYSDIVTTTTHKTLRGARSGLIFYRKGVRAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQASTPMFREYSLQVLKNARAMADALLDRGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVNSKTAKLQDFKSFLLKDPETIQHLANLRQRVEQFARAFPMPGFDER