Sequence details NCBI ID: XM_004857120.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Myo1c
Gene Name myosin IC, transcript variant X3
Entrez Gene ID 101718154

Database interlinks

Part of NW_004624786.1 (Scaffold)

For more information consult the page for NW_004624786.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

MYO1C ENSCPOG00000019415 (Guinea pig)

Gene Details

myosin IC

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000016478, Guinea pig)

Protein Percentage 97.65%
CDS Percentage 93.98%
Ka/Ks Ratio 0.0479 (Ka = 0.0116, Ks = 0.2416)

MYO1C ENSG00000197879 (Human)

Gene Details

myosin IC

External Links

Gene Match (Ensembl Protein ID: ENSP00000352834, Human)

Protein Percentage 96.61%
CDS Percentage 90.12%
Ka/Ks Ratio 0.02733 (Ka = 0.0157, Ks = 0.5753)

Myo1c ENSMUSG00000017774 (Mouse)

Gene Details

myosin IC

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000104069, Mouse)

Protein Percentage 95.4%
CDS Percentage 88.03%
Ka/Ks Ratio 0.03757 (Ka = 0.0243, Ks = 0.6465)

Myo1c ENSRNOG00000004072 (Rat)

Gene Details

myosin IC (Myo1c), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000028929, Rat)

Protein Percentage 95.69%
CDS Percentage 88.19%
Ka/Ks Ratio 0.03698 (Ka = 0.0232, Ks = 0.6283)

Genome Location

Sequence Coding sequence

Length: 3192 bp    Location: 4211732..4188143   Strand: -
Raw sequence   
>XM_004857120.1
ATGGCGCTGCAAGTGGAGCTGATACCCACCGGGGAGATCATCCGCGTGGTTCACCCCCACAGGCCATGCAAGCTTGCCCTGGGCAGTGACGGGGTACGGGTGACCATGGAGAGCGCCCTGACCGCTCGCGACCGGGTCGGGGTGCAGGACTTTGTGCTGCTGGAAAACTTCACCAGTGAAGCTGCCTTCATTGAAAACCTGCGGCGACGCTTCCGAGAGAACCTTATTTATACCTACATTGGCCCTGTCCTGGTCTCTGTCAACCCCTACCGAGACCTACAGATTTATAGCAGGCAGCATATGGAGCGCTACCGTGGTGTCAGCTTCTATGAAGTGCCACCCCACCTGTTTGCAGTGGCTGACACTGTGTACCGGGCACTGCGAACTGAGCGCCGGGACCAGGCAGTGATGATCTCTGGGGAGAGTGGAGCAGGCAAGACAGAGGCCACCAAGCGGCTGCTCCAGTTCTATGCAGAGACATGCCCGGCCCCTGAGCGAGGTGGCGCTGTGCGGGACCGGCTACTGCAGAGCAACCCTGTGCTAGAGGCCTTTGGAAATGCCAAGACCCTCCGGAATGATAACTCCAGCCGATTTGGGAAGTACATGGATGTGCAGTTTGACTTCAAGGGTGCCCCTGTGGGTGGCCACATCCTCAGTTACCTTTTGGAGAAGTCCCGAGTGGTACACCAGAATCATGGGGAGAGGAACTTCCACATCTTCTACCAGCTGCTGGAGGGAGGTGAGGAGGAGACGCTGCGCAGGCTAGGCTTGGAACGGAACCCCCAGAGCTACTTGTACCTGATAAAGGGCCAGTGTGCTAAAGTCTCCTCCATCAATGACAAGAATGACTGGAAGGTCGTGAGGAAGGCACTGAGAGTCATTGACTTCACAGAGGATGAAATAGAGGAACTGCTCAGCATTGTAGCCAGTGTCCTGCATCTGGGCAACATCCACTTTGCTGCTGATGAGGAAAGCAATGCCCAGGTCACCACAGAGAACCAGCTGAAGTATCTGACCAGGCTCCTTGGTGTGGAAGGCTCGACTTTGCGGGAAGCCCTGACACACAGGAAGATCATCGCCAAGGGAGAAGAGCTCTTGAGCCCACTGAACCTGGAACAGGCGGCATACGCGAGGGACGCTCTTGCTAAGGCCGTATACAGCCGCACTTTCACCTGGTTGGTTGAGAAGATCAACAGATCACTGGCTTCCAAGGACGCCGAGAGCCCCAGCTGGCGGAGCACCACAGTTCTTGGGCTCCTGGACATTTATGGCTTTGAGGTGTTTCAGCATAATAGCTTTGAGCAATTTTGCATTAACTACTGCAATGAGAAGCTACAGCAACTCTTCATCGAGCTGACACTCAAGTCAGAACAAGAGGAGTATGAGGCAGAGGGCATTGCGTGGGAGCCTGTCCAGTATTTCAACAACAAGATCATTTGCGACTTGGTGGAGGAGAAATTCAAGGGGATCATCTCCATCTTGGATGAGGAATGTCTGCGCCCTGGGGAGGCCACAGACCTGACCTTCCTGGAGAAGCTGGAAGACACCATCAAGCACCATCCACACTTCCTGACGCACAAACTGGCTGACCAGCGGACTAGGAAATCTCTAGGCCGTGGGGAGTTTCGGCTTCTGCACTATGCTGGGGAGGTGACCTACAATGTGATGGGCTTTCTGGATAAAAACAATGATCTTCTCTTCCGAAACCTGAAGGAGACCATGTGCAGCTCGAAGAATCCCATCATGAGCCAGTGCTTTGACCGGAGCGAGCTCAGTGACAAGAAGCGGCCAGAGACGGTTGCCACCCAATTCAAGATAAGCCTCCTGCAGCTGGTAGAGATCCTGAAATCTAAGGAGCCCGCCTACATCCGCTGCATCAAGCCTAATGATGCCAAACAGCCAGGCCGCTTTGATGAGGTGCTGATCCGGCACCAGGTGAAATACCTGGGGCTGATGGAGAACCTACGTGTGCGCAGAGCTGGCTTTGCCTATCGCCGAAAATATGAGGCTTTCCTACAGAGGTACAAGTCACTGTGCCCAGAGACATGGCCTACGTGGGCAGGACGCCCCCAAGATGGGGTGGCTGTACTGGTCAGGCACCTTGGCTACAAGCCAGAAGAGTACAAGATGGGCAGGACCAAGATCTTCATCCGCTTCCCTAAGACCCTGTTTGCCACAGAGGACGCCCTGGAGATCCGGCGGCAGAGCCTGGCCACGAAGATCCAGGCTGCCTGGAGGGGCTTTCACTGGCGGCAGAAATTCCTCCGGGTGAAGCGATCAGCCATCTGTATCCAGTCATGGTGGCGTGGAACACTGGGCAGGAGGAAGGCAGCCAAGAGGAAGTGGGCAGCCCAGACCATCCGGCGGTTCATCCATGGCTTCATCCTGCGCCACGCACCCCGTTGCCCTGAGAATGCCTTCTTCCTGGACCATGTGCGCACCTCTTTTTTGCTTAACCTTCGGCAGCAGCTGCCCCGGAATGTCCTGGATACCTCCTGGCCTACACCCCCACCTGCCCTGCATGAGACCTCAGAGCTTCTACGAGATCTGTGCATGAAGAACATGGTGTGGAAATACTGCCGGAGTATCAGCCCTGAATGGAAGCAGCAGCTGCAACAAAAGGCTGTGGCTAGCGAGATCTTCAAGGGCAAGAAGGATAATTACCCCCAGAGTGTCCCCAGGCTCTTCATCAGCACACGGCTTGGCACAGATGAGATCAGCCCCAAAGTGCTGCAGGCCCTAGGCTCTGAGCCCGTCCAGTATGCAGTGCCAGTGGTAAAATACGACCGAAAGGGCTATAAGCCTCGCTCCCGGCAGCTGCTACTCACACCCAGCGCTGTGGTCATCGTAGAGGATGCCAGAGTCAAGCAGAGGATTGATTACGGCAACCTGACTGGTATCTCTGTCAGCAGCCTGAGCGACAGCCTATTTGTGCTTCACGTGCAGCGTGAGGACAATAAGCAGAAGGGGGATGTGGTGCTGCAGAGTGACCATGTGATTGAGACACTGACCAAGACAGCTCTCAGTGCCAATTGTGTAAACAACATCAATATCAACCAGGGAAGCATCACATTTGCAGGGGGCCCTGGCAGAGATGGTGTCATTGACTTCACACCTGGCTCAGAGCTGCTCATCACCAAGGCCAAGAATGGGCACCTGGCAGTGGTGGCCCCACGGCTGAATTCTCGGTGA

Related Sequences

XP_004857177.1 Protein

Myo1c PREDICTED: unconventional myosin-Ic isoform X3 [Heterocephalus glaber]

Length: 1063 aa      View alignments
>XP_004857177.1
MALQVELIPTGEIIRVVHPHRPCKLALGSDGVRVTMESALTARDRVGVQDFVLLENFTSEAAFIENLRRRFRENLIYTYIGPVLVSVNPYRDLQIYSRQHMERYRGVSFYEVPPHLFAVADTVYRALRTERRDQAVMISGESGAGKTEATKRLLQFYAETCPAPERGGAVRDRLLQSNPVLEAFGNAKTLRNDNSSRFGKYMDVQFDFKGAPVGGHILSYLLEKSRVVHQNHGERNFHIFYQLLEGGEEETLRRLGLERNPQSYLYLIKGQCAKVSSINDKNDWKVVRKALRVIDFTEDEIEELLSIVASVLHLGNIHFAADEESNAQVTTENQLKYLTRLLGVEGSTLREALTHRKIIAKGEELLSPLNLEQAAYARDALAKAVYSRTFTWLVEKINRSLASKDAESPSWRSTTVLGLLDIYGFEVFQHNSFEQFCINYCNEKLQQLFIELTLKSEQEEYEAEGIAWEPVQYFNNKIICDLVEEKFKGIISILDEECLRPGEATDLTFLEKLEDTIKHHPHFLTHKLADQRTRKSLGRGEFRLLHYAGEVTYNVMGFLDKNNDLLFRNLKETMCSSKNPIMSQCFDRSELSDKKRPETVATQFKISLLQLVEILKSKEPAYIRCIKPNDAKQPGRFDEVLIRHQVKYLGLMENLRVRRAGFAYRRKYEAFLQRYKSLCPETWPTWAGRPQDGVAVLVRHLGYKPEEYKMGRTKIFIRFPKTLFATEDALEIRRQSLATKIQAAWRGFHWRQKFLRVKRSAICIQSWWRGTLGRRKAAKRKWAAQTIRRFIHGFILRHAPRCPENAFFLDHVRTSFLLNLRQQLPRNVLDTSWPTPPPALHETSELLRDLCMKNMVWKYCRSISPEWKQQLQQKAVASEIFKGKKDNYPQSVPRLFISTRLGTDEISPKVLQALGSEPVQYAVPVVKYDRKGYKPRSRQLLLTPSAVVIVEDARVKQRIDYGNLTGISVSSLSDSLFVLHVQREDNKQKGDVVLQSDHVIETLTKTALSANCVNNININQGSITFAGGPGRDGVIDFTPGSELLITKAKNGHLAVVAPRLNSR