Sequence details NCBI ID: XM_004854964.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Phf17
Gene Name PHD finger protein 17, transcript variant X4
Entrez Gene ID 101702228

Database interlinks

Part of NW_004624777.1 (Scaffold)

For more information consult the page for NW_004624777.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PHF17 ENSCPOG00000002256 (Guinea pig)

Gene Details

PHD finger protein 17

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000002047, Guinea pig)

Protein Percentage 96.56%
CDS Percentage 93.99%
Ka/Ks Ratio 0.06422 (Ka = 0.0154, Ks = 0.2397)

PHF17 ENSG00000077684 (Human)

Gene Details

PHD finger protein 17

External Links

Gene Match (Ensembl Protein ID: ENSP00000226319, Human)

Protein Percentage 97.27%
CDS Percentage 93.27%
Ka/Ks Ratio 0.04587 (Ka = 0.0125, Ks = 0.2732)

Phf17 ENSMUSG00000025764 (Mouse)

Gene Details

PHD finger protein 17

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000128152, Mouse)

Protein Percentage 92.19%
CDS Percentage 89.7%
Ka/Ks Ratio 0.10015 (Ka = 0.0392, Ks = 0.391)

Phf17 ENSRNOG00000014066 (Rat)

Gene Details

PHD finger protein 17 (Phf17), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000018872, Rat)

Protein Percentage 93.11%
CDS Percentage 89.96%
Ka/Ks Ratio 0.09373 (Ka = 0.0353, Ks = 0.377)

Genome Location

Sequence Coding sequence

Length: 2532 bp    Location: 9665721..9726266   Strand: +
Raw sequence   
>XM_004854964.1
ATGAAACGAGGTCGCCTTCCCAGCAGCAGTGAGGATTCTGACGACAATGGCAGCCTGTCTACTACGTGGTCCCAGAACTCTCGGTCCCAGCACAGGAGAAGCTCCTGCTCCAGACATGAAGATCGGAAGCCCTCGGAGGTGTTTAGGACAGACCTGATCACCGCCATGAAGTTGCATGACTCTTACCAGCTGAACCCAGATGAATACTACGTGTTGGCAGACCCCTGGAGACAGGAGTGGGAGAAGGGCGTCCAGGTGCCTGTGAGCCCAGGAACCATCCCACAGCCTGTGGCCAGGGTTGTGTCTGAAGAGAAGTCTCTCATGTTCATCAGGCCCAAGAAATACATCCTCTCATCGGGTTCTGAGCCTCCAGAGTTGGGCTATGTTGATATCCGGACACTGGCCGACAGCGTGTGTCGATACGACCTCAATGACATGGACGCCGCGTGGCTGGAGCTCACCAATGAAGAGTTTAAGGAGATGGGGATGCCTGAACTAGATGAGTACACTATGGAAAGGGTCCTGGAGGAATTTGAACAGCGATGCTATGATAACATGAATCATGCCATAGAGACCGAGGAGGGACTGGGGATCGAGTATGATGAAGATGTGGTCTGTGATGTCTGCCAATCACCCGACGGTGAGGACGGCAATGAGATGGTGTTCTGTGACAAATGTAACATCTGTGTGCACCAGGCCTGCTATGGAATCCTCAAGGTGCCAGAGGGCAGTTGGCTGTGCCGGACATGTGCCCTGGGGGTTCAGCCAAAATGCTTGCTGTGTCCCAAGAAGGGCGGAGCTATGAAGCCCACCCGCAGCGGAACCAAGTGGGTCCATGTCAGCTGTGCCCTGTGGATTCCTGAGGTGAGCATCGGCAGCCCAGAGAAGATGGAGCCCATCACAAAGGTGTCTCACATCCCCAGCAGTCGGTGGGCGCTAGTGTGTAGCCTCTGCAATGAGAAGTTTGGGGCCTCCATACAGTGCTCTGTGAAGAACTGCCGCACAGCCTTCCACGTGACATGTGCTTTTGACCAGGGCTTGGAGATGAAGACCATCTTGGCAGAGAATGATGAAGTCAAGTTCAAGTCCTACTGCCCCAAGCACAGCTCACATAGAAAACCTGAGGAGAGCCTCGCGGAGGGGACTTCGCAGGAGAACGGAGCCCCAGTGTGTTCCCCCCGGGACCCGCTGGAACCCTACGCCAACCTTGAGCAGAATCGGGAGGAGGCCCACCGGGTGAGTGTCCGCAAGCAGAAGCTGCAGCAGCTGGAGGATGAGTTCTACACCTTCGTCAACCTGCTTGATGTGGCCAGGGCCCTGCGGCTGCCCGAAGAAGTAGTGGATTTCCTGTACCAGTACTGGAAGTTGAAGAGGAAGGTCAACTTCAATAAGCCCCTGATCACCCCAAAGAAAGACGAAGAGGACAATCTAGCCAAGCGGGAGCAGGATGTCTTGTTTAGGAGGCTGCAGCTGTTCACGCACCTGCGGCAGGACCTGGAGAGGGTTCGGAACCTCACTTACATGGTGACCCGCAGGGAAAAGATTAAACGATCTGTGTGCAAAGTCCAGGAACAGATATTCAATCTTTACACTAAGCTCTTGGAGCAAGAAAGAGTTTCAGGTGTGCCTTCTTCTTCCTGCTCTTCCTCTTCACTGGAAAATATGCTTTTGTTTAATAGTCCTTCTGTGGGCCCTGATGCTCCCAAGATAGAGGACTTGAAGTGGCATTCTGCATTCTTCAGGAAACAAATGGGTACTTCCTTGGTTCATTCGCTGAAAAAGCCTCATAAGCGAGATCCATTGCAGAATAGCACTGGGAGCGAGGGCAAGACCCTGCTAAAGCAGCCAGACATGTGTGGCAGAAGGGAGGGGCTGGTGGTTCCAGAGAGCTTTCTGAGTTTTGAGAAGACTTTTGCAGAAGCACGTCTCATATCAGCACAACAGAAAAATGGTGTGGTGATCCCAGACCATGGGAAAAGAAGAGACAATCGTTTTCATTGTGATCTCATTAAAGGAGACTTAAAAGATAAACCTTTTAAACAGAGTCACAAGCCTCTCAGGTCCACAGACGTGTCTCAGAGGCATCTGGACAACACAAGAGCTGCCACCTCCCCTGGAGTGGGGCAGTCAGCACCCGGCGCCAGGAAGGAGATTGTGCCCAAGTGCAATGGCTCCTTAATCAAAGTAAACTATAATCAGACTGCAGTCAAAGTGCCTACAACACCTGCCAGCCCAGTGAAAAACTGGGGAGGATTCCGGATTCCAAAGAAGGGGGAGCGGCAGCAGCAGGGAGAGGTCCATGAGGGGGCCTGCCACCAGCACTCAGACTACCCATATTTGGGCTTAGGCCGAGTTCCAGCCAAGGAAAGGGCAAAAAGCAAATTAAAATCTGACAATGAGAATGACGGGTATGTCCCTGATGCAGAAATGAGTGACTCCGAGAGTGAGGCATCGGAAAAGAAGTGTATACACGCCAGCAGCAGTATCAGCAGGAGGACAGACATCATCAGGAGAAGCATCTTGGCCTCTTGA

Related Sequences

XP_004855021.1 Protein

Phf17 PREDICTED: protein Jade-1 isoform X4 [Heterocephalus glaber]

Length: 843 aa      View alignments
>XP_004855021.1
MKRGRLPSSSEDSDDNGSLSTTWSQNSRSQHRRSSCSRHEDRKPSEVFRTDLITAMKLHDSYQLNPDEYYVLADPWRQEWEKGVQVPVSPGTIPQPVARVVSEEKSLMFIRPKKYILSSGSEPPELGYVDIRTLADSVCRYDLNDMDAAWLELTNEEFKEMGMPELDEYTMERVLEEFEQRCYDNMNHAIETEEGLGIEYDEDVVCDVCQSPDGEDGNEMVFCDKCNICVHQACYGILKVPEGSWLCRTCALGVQPKCLLCPKKGGAMKPTRSGTKWVHVSCALWIPEVSIGSPEKMEPITKVSHIPSSRWALVCSLCNEKFGASIQCSVKNCRTAFHVTCAFDQGLEMKTILAENDEVKFKSYCPKHSSHRKPEESLAEGTSQENGAPVCSPRDPLEPYANLEQNREEAHRVSVRKQKLQQLEDEFYTFVNLLDVARALRLPEEVVDFLYQYWKLKRKVNFNKPLITPKKDEEDNLAKREQDVLFRRLQLFTHLRQDLERVRNLTYMVTRREKIKRSVCKVQEQIFNLYTKLLEQERVSGVPSSSCSSSSLENMLLFNSPSVGPDAPKIEDLKWHSAFFRKQMGTSLVHSLKKPHKRDPLQNSTGSEGKTLLKQPDMCGRREGLVVPESFLSFEKTFAEARLISAQQKNGVVIPDHGKRRDNRFHCDLIKGDLKDKPFKQSHKPLRSTDVSQRHLDNTRAATSPGVGQSAPGARKEIVPKCNGSLIKVNYNQTAVKVPTTPASPVKNWGGFRIPKKGERQQQGEVHEGACHQHSDYPYLGLGRVPAKERAKSKLKSDNENDGYVPDAEMSDSESEASEKKCIHASSSISRRTDIIRRSILAS