Sequence details NCBI ID: XM_004854507.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Tcof1
Gene Name Treacher Collins-Franceschetti syndrome 1
Entrez Gene ID 101707739

Database interlinks

Part of NW_004624774.1 (Scaffold)

For more information consult the page for NW_004624774.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

TCOF1 ENSCPOG00000002741 (Guinea pig)

Gene Details

Treacher Collins-Franceschetti syndrome 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000002489, Guinea pig)

Protein Percentage 73.33%
CDS Percentage 81.8%
Ka/Ks Ratio 0.55835 (Ka = 0.1819, Ks = 0.3258)

TCOF1 ENSG00000070814 (Human)

Gene Details

Treacher Collins-Franceschetti syndrome 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000421655, Human)

Protein Percentage 61.43%
CDS Percentage 71.38%
Ka/Ks Ratio 0.53684 (Ka = 0.3255, Ks = 0.6063)

Tcof1 ENSMUSG00000024613 (Mouse)

Gene Details

Treacher Collins Franceschetti syndrome 1, homolog

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000135639, Mouse)

Protein Percentage 59.6%
CDS Percentage 68.79%
Ka/Ks Ratio 0.46181 (Ka = 0.3586, Ks = 0.7766)

Tcof1 ENSRNOG00000026108 (Rat)

Gene Details

Treacher Collins-Franceschetti syndrome 1 (Tcof1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000045755, Rat)

Protein Percentage 58.68%
CDS Percentage 69.74%
Ka/Ks Ratio 0.47034 (Ka = 0.3419, Ks = 0.7269)

Genome Location

Sequence Coding sequence

Length: 4407 bp    Location: 9660289..9698734   Strand: +
Raw sequence   
>XM_004854507.1
ATGGCAGAGGCCAGGAAGCGGCGGGAACTGCTTCCCCTGATCTATCAGCATCTCCTGCACGCGGGCTACGTGCGCGCGGCGCGGGAAGTGAAGGAGCAGAGCGGCCAGAAAAGTTTCCTGGCTCAGCCTTTCACCCTTTTGGACATCTATACCCACTGGCAGCAAACCTCAGAAATTGGCCAGAAGCGGAAGGCAGAAGACGATGCAGCTCTGCAAGCCAAGAAGACCCGAGTGTCAGATCCCATCAGCAGCTCCGAGAGCTCCGAAGAGGAGGAGGAGGAGGAGGAAGAAGCGGAAGCCAAAGCTGCCAAAACTACCCCAAGACCAGCATCTACCAACTCCTCAGCTATGGGGATGGTTTTGCCATCAAGCATGAAAGAAAAGGCCAAGACCAGGAACACCAGCAAGACGGTGAACTCTGTGCCACACCTTGCCTCAGGGAAGGCAGTAGTCCACCTCCTTTCTGGGAAGTCACCTAAGAAGTCAGCAGAGCTCTCCGGAAGTACTGTCTTGGTCTCGGAAACTGAGGAGGAAGGCAGCATCCAGGCTCTTGAAGCTGCTGCCAAGCCTGGGACAGTGTCAGCAGGCCAGGCCGACAACTCCAACAAGGACACCTCCAGCTCCAGCGATGAAACAGATGTGGAGGTAAAGTCCTCAGTAGAAACGTCCCAAGTCAGGCCCTCACTTACCCTTGCGAAGGAGTCTTCAGCAAGTAAGGCAGCCCCAAGCCCTGGGAAAGTGGGGGGGGTGGCACGCCAGGCCAGAGGAGGTGCCCTCACCCCAGCTGGGAGTGCCGTGAAACCAGAGGAGGAGCCCCCCACAGGGGCACCCAGCCAAGTAAAGGCATCTGAGAAAATCCTTCAGGTTAGACTTGCCCCAGCCTCTGCCAAGGGGACCCCTGGCAAACAGGCCACATGTGCACTCCCTGGGAAAGGAGGGCCCTTAGCCACACAAGCCAAGGCAAGGAGGCCAGAGCAGGACTCAGAGAGCAGCAGTGAGGGAGAGTCTGACAGTGAGGTGGAGACACCACCTGTCATGACTGCACTTCAGGCAAAGCTCTCCGGAAAGACCCTGCAGGTCAGAGCTGCCTCAGCCCCTGCCAAAGAGTCCCCCAGGAAGGGACACCCTCCAGCAACCCCTGGGAAAACAGGACCTGCAGCCACCCAGGCCCAGGTGGGGAAGCAGGAGGAGGACTCGGACAGCAGCAGTGAGGAGTCAGACAGTGACGGGGAGACACCAGCAGCCCAGACCCTAGCAAAGCCCTCAGGGAAGATCCTCCAGGTCAGACCTGCCTCGGGTCCCACCAAAGGGCTGCTGGGGAAAGGGGCTGCCCCTAAACCCCCTCAGAAGTCAGGGCCTGTGGCCATTCAGGTCAAGGCTGAAAAGTCCAAGGACGACTCAGAGAGCAGCGAAGAGTCATCTGACAGTGAGGAGGAAGCACCTGCAGCCGTGACTCCAGCTCAGGCAAAACCAGAGCTGAAAATGCCTCAGACTAAGGCTTCCCCTAGTAAAAGCATCCTCCTCACCCCCACATCTGCCAAGGGTGCCCCAGTGCGAGTGGGCACCCCAGCCCCCTGGAAAGCAGGTACAGTGGCTTCTGCATCGTCCTCAGCGCTGCCTCGGGGCGCCCAGAGGCCAAAGGACAATTCTTCAAGCAGCGAGGAGGAGTCAGAGGGCAAGGAGGCCACTCCTGCGGCAGCAGTGGCGCAGGCAAAGTCTCTGGGGAAAGGCCTCCGAGGTCAAGCTGCCTCAGCACCCACCATGGGGCCCTCAGGGCAAGGGGCCACCCCAGTCCCTCCTGGGAAAACAAGGCCCACAGTTGCCCAGGTGAGAGCTGAGGCTCACGAAAGCTCTGAGAGCAGTGAGGAGGAATCTGATGACAGTGAGGTGGGAGCAGTCGTGACTCCAGCACAGGCAAAAGCCCCAGGGAAAACCCCTCAGGCCAAAGCCAACCCAGCTTCCACCAAGGCATCTACAGACAAAGAGGCAGCATGGACTCCTGCAAAACTGGTCACTGCGGTTGTGCAAGCCAAACCAGGATCCATGGCCAAGGGAAAGTCACCAGTGAGAGCCCCGAAGAACAGTACCATCTCAGCAAGGGGCCAGGCATCTGTGCCAGCATCGGGGAAGGCAGTGACTGCAGCAGCGCAGTCCCAGAAGGGTCCCACTCAAGAGTCAGAAGAGAAGGACTTGGAGAGCAGTGAGGAGTCCTCAGAGAGCGAGGAGGAGTTGCCGACCCAGGCAAAGCCCTCAGGAAAGACCCTGCAGGTCAGAGCTGCCACAGCCCCTGCCAAGGAGTCCTCCAGGAAGGGACCCTCTCCAACAACTCCAGGGAAAACAGGACCTGCAGGCACTCAGGCCCAGGTGGGGAAGCAGGAGGAGGACTCGGACAGCAGCAGTGAGGAGTCAGACAGTGACGGGGAGACACCAGCAGCCCAGCTGAAGCCCTTGGGGAAGACTCCTCAGGTCAAAGCTGCCTCAGCCACTGCTAACGGGTCCCCCAGAAAGGGGGCCCCTCCAGCACCCCCTGGGAAGACAGGGCCTGCAGCCATCCAGGCCCAGGTTCAGAGTCAGCTCTGGAAGGTGCTGAGCAGGGCAGAGGTGCCTATTTCCGGGGCTGTGGGACATGCCAGCCCAGCAGCTGTCCGTGTCCATGTGTGTGTGCAGAAACCGGCCAGCCGTCTCCCCTCAGCTAATACCCTTCATATGCTCCTTCAGGTCCTTTCCCTGCAGAAGAACATTAACTCAAAAACTGTCGGAAGCAATACCCTGACCCCAGCTCCCCGGGAGAAGAGCCCAGAGGGGTCCTCGGAGAGCAGTGAAGAGGAGCTGCCCTCCAGCCAGGTGATTAAAACCCCTCTGATTTTTGTCGACCCTAATCGTAGTCCAGCTGGCCCAGCTGCGACCCCCACACAAGCCCAGGCTGCAAGTCCCCCAAGGAAGGCCCGGGCCTCCAGCAGCACTGCCGGGAGCTCCTCTGAGGGCGAGGACGAGGATGTGATCCCCGCCACACAGTCCTCCACGCTTGCTGTTAGAAAAGAGGTGGTGACTGTGCCCACTGCCTCCCCAAGGATGGCCCCCAGAGCCAGCAGCAGCCTGGAGTCCAGTCGGGTATCACCAGGCCAGAAACAGGAGGCAGCAGCCCCTCAGGTGACAAAGAGGAATCTGGCTTCCCTCCCACTGACTCAGGCTGCCCTGAAGGTCCTTGCCCAGAAAGCTAGTGAGGGCCAGCCTTCAAGTGAGGCTGGCAGCGATGCAGGAACACTGCCTGTGACATGTCCCCAGAGCAACCCTGTCCAGGCCAGAGTGACCAATAAGCTCAGAAAACCCAAGCCATCTGAAGGCCAGCAGACCACAGTCACCACCTCGGGCCACCTCAAAGCCACAGCCCCAGGAAGCTCAGACAACAGTGACGACAGCAGTGACAACTCTTCGGGGAGTGAGGAGGATGCTGAGGAACCTCTGATGACCAAGTCAGCCCCTGGGCTGGGTCCATCCCCCTCCAAGAGGGAGACCTTGGTGGAGGAGACCACAGCAGAGTCCAGCGAGGATGAGGTGGTGGTGCCCTCCCAGTCTCTCCTCTCAGGTTTTGTGACCCCTGGGCTGACCATGGCCAATAACCGGGCTTCAAAAGCCACTGCCAGGCAGAACTTGCATCCCTCACTTTCCTCTCCTCCACCCACTAAAGATGACCCAGCTGGCAAGCAGGCAGCCGAGTCCCAACACATAGCAGGTGCTGTGTCCCCTAAGCCAGGGAGAAAAGAGGCTGCCTCAGGCCCCACACCTCAGAAGCCCCGGAAGCCCAAGAAGGGGCCCCTGAGCACCTCAGCCTCCCTGCAGACGCTGCAAAGTAACATCACTCAGCATCTCCAGGGCCAACCCTGGCCCCTGAACGAGGCACAGGTGCAGGCCTCGGTGGTAAAGGTCCTGACTGAGCTGTTAGAGCAGGAGAGGAAGAAGGCTGAAGACACCGCCAGGGAGAGCAGCAGGAAGGGCCGGAAGCGGAAGCTGTCAGGGGACCAGGTGGCCTCCAGGGCCCCCAAGGGCAAGAAGAAGAAGCAGCTGGCAGCCGGGGAAGGCAGGGAGGATGCTGCTTCCTCAGAAAAGGCCCCAAGGACTTCCAAGGGGAAATCAAAGAGAGACAAAGCAAGTGGTGATCTCAAGGAGGAGAAGGGATCTGGCTCCGGAGGGTCCAAGGACAAGCCAGATGGGGAGCTTCTGAAGGTAGAGAGTGGAAATCAGAATGACTCAAAGAGCAAGAAAGAGAAGAAGAAATCAAATAAGAAAAAAAAAGACAAGGAAAAAAAGGAAAAGAAGAAAGGAAAAAAGCCTTCAGCCAAAGACTCTGATTCACCATTCCAGAAGAAAAAGAAGAAAAAGAAGAAGACGGCAGAGCAGACGGTGTGA

Related Sequences

XP_004854564.1 Protein

Tcof1 PREDICTED: treacle protein [Heterocephalus glaber]

Length: 1468 aa      View alignments
>XP_004854564.1
MAEARKRRELLPLIYQHLLHAGYVRAAREVKEQSGQKSFLAQPFTLLDIYTHWQQTSEIGQKRKAEDDAALQAKKTRVSDPISSSESSEEEEEEEEEAEAKAAKTTPRPASTNSSAMGMVLPSSMKEKAKTRNTSKTVNSVPHLASGKAVVHLLSGKSPKKSAELSGSTVLVSETEEEGSIQALEAAAKPGTVSAGQADNSNKDTSSSSDETDVEVKSSVETSQVRPSLTLAKESSASKAAPSPGKVGGVARQARGGALTPAGSAVKPEEEPPTGAPSQVKASEKILQVRLAPASAKGTPGKQATCALPGKGGPLATQAKARRPEQDSESSSEGESDSEVETPPVMTALQAKLSGKTLQVRAASAPAKESPRKGHPPATPGKTGPAATQAQVGKQEEDSDSSSEESDSDGETPAAQTLAKPSGKILQVRPASGPTKGLLGKGAAPKPPQKSGPVAIQVKAEKSKDDSESSEESSDSEEEAPAAVTPAQAKPELKMPQTKASPSKSILLTPTSAKGAPVRVGTPAPWKAGTVASASSSALPRGAQRPKDNSSSSEEESEGKEATPAAAVAQAKSLGKGLRGQAASAPTMGPSGQGATPVPPGKTRPTVAQVRAEAHESSESSEEESDDSEVGAVVTPAQAKAPGKTPQAKANPASTKASTDKEAAWTPAKLVTAVVQAKPGSMAKGKSPVRAPKNSTISARGQASVPASGKAVTAAAQSQKGPTQESEEKDLESSEESSESEEELPTQAKPSGKTLQVRAATAPAKESSRKGPSPTTPGKTGPAGTQAQVGKQEEDSDSSSEESDSDGETPAAQLKPLGKTPQVKAASATANGSPRKGAPPAPPGKTGPAAIQAQVQSQLWKVLSRAEVPISGAVGHASPAAVRVHVCVQKPASRLPSANTLHMLLQVLSLQKNINSKTVGSNTLTPAPREKSPEGSSESSEEELPSSQVIKTPLIFVDPNRSPAGPAATPTQAQAASPPRKARASSSTAGSSSEGEDEDVIPATQSSTLAVRKEVVTVPTASPRMAPRASSSLESSRVSPGQKQEAAAPQVTKRNLASLPLTQAALKVLAQKASEGQPSSEAGSDAGTLPVTCPQSNPVQARVTNKLRKPKPSEGQQTTVTTSGHLKATAPGSSDNSDDSSDNSSGSEEDAEEPLMTKSAPGLGPSPSKRETLVEETTAESSEDEVVVPSQSLLSGFVTPGLTMANNRASKATARQNLHPSLSSPPPTKDDPAGKQAAESQHIAGAVSPKPGRKEAASGPTPQKPRKPKKGPLSTSASLQTLQSNITQHLQGQPWPLNEAQVQASVVKVLTELLEQERKKAEDTARESSRKGRKRKLSGDQVASRAPKGKKKKQLAAGEGREDAASSEKAPRTSKGKSKRDKASGDLKEEKGSGSGGSKDKPDGELLKVESGNQNDSKSKKEKKKSNKKKKDKEKKEKKKGKKPSAKDSDSPFQKKKKKKKKTAEQTV