Sequence detailsNCBI ID: XM_004851581.1 (Coding sequence)  Best Hit

Details from NCBI annotation

Gene Symbol Bdnf
Gene Name brain-derived neurotrophic factor, transcript variant X1
Entrez Gene ID 101704465

This gene is present in the GenAge database and has been identified as potentially important to ageing in humans.

Database interlinks

Part of NW_004624766.1 (SequenceType object (1))

For more information consult the page for NW_004624766.1 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

BDNFENSCPOG00000009920 (Guinea pig)

Gene Details

Brain-derived neurotrophic factor

External Links

Gene Match(Ensembl Protein ID:ENSCPOP00000017078, Guinea pig)

Protein Percentage 96.84%
CDS Percentage 92.89%
Ka/Ks Ratio 0.03408 (Ka = 0.0135, Ks = 0.3953)

BDNFENSG00000176697 (Human)

Gene Details

brain-derived neurotrophic factor

External Links

Gene Match(Ensembl Protein ID:ENSP00000414303, Human)

Protein Percentage 93.73%
CDS Percentage 87.45%
Ka/Ks Ratio 0.04549 (Ka = 0.0302, Ks = 0.6633)

BdnfENSMUSG00000048482 (Mouse)

Gene Details

brain derived neurotrophic factor

External Links

Gene Match(Ensembl Protein ID:ENSMUSP00000057989, Mouse)

Protein Percentage 93.0%
CDS Percentage 88.46%
Ka/Ks Ratio 0.05827 (Ka = 0.0333, Ks = 0.5707)

BdnfENSRNOG00000047466 (Rat)

Gene Details

brain-derived neurotrophic factor (Bdnf), transcript variant 1, mRNA

External Links

Gene Match(Ensembl Protein ID:ENSRNOP00000064356, Rat)

Protein Percentage 93.17%
CDS Percentage 87.82%
Ka/Ks Ratio 0.05142 (Ka = 0.0325, Ks = 0.6312)

Genome Location

Sequence SequenceType object (2)

Length: 786 bp    Location: 17330379..17281908   Strand: -
Raw sequence   
>XM_004851581.1
ATGTTCCACCAGGTGAGAAGAGGGATGACCATCCTTTTCCTTACTATGGTTATTTCGTACTTCGGTTGCATGAAGGCCGCCCCCATGAAAGAAGCCAGTGTCCGAGGCCCAGGCAGCTTGGCCTACCCCGGAGTGCGGACCCACGGGGCCCTGGACAGCGTGACCGGGCCCAAGGTGGGTGCGCGGGGCCTGGCGGCGTCTTCATCGTCTTCGTCGCTGGCTGACACTTTTGAGCACGTGATCGAGGAGCTGCTGGAGGAGGACCAGAAAGTCAGGCCCCATGAAGAGAATGCGAAGGACGCGGACTTGTACACGTCCCGGGTGATGCTGAGCAGCCAGGTGCCTTTGGAGCCGCCCCTCCTCTTTCTGCTCGAGGAATACAAAAATTACCTGGACGCTGCCAACATGTCCATGCGGGTCCGGCGCCACTCCGACCCGGCCCGCCGTGGGGAGCTGAGCGTGTGCGACAGCATCAGTGAGTGGGTCACCGCCGCGGATAAAAAGACTGCAGTGGACATGTCTGGCGGGACGGTCACCGTCCTGGAGAAGGTCCCCGTGTCCAAAGGCCAACTGAAGCAGTACTTCTACGAGACCAAGTGCAACCCCATGGGCTACACCAAGGAGGGCTGCAGAGGCATAGACAAGAGGCACTGGAACTCGCAGTGCCGAACTACCCAGTCCTACGTGCGGGCCCTCACCATGGATAGCAAAAAGAGAATTGGCTGGCGGTTCATAAGGATAGACACTTCCTGTGTATGTACACTGACCATTAAGAGAGGAAGATAG

Related Sequences

XP_004851638.1 SequenceType object (4)

Bdnf PREDICTED: brain-derived neurotrophic factor isoform X1 [Heterocephalus glaber]

Length: 261 aa      View alignments
>XP_004851638.1
MFHQVRRGMTILFLTMVISYFGCMKAAPMKEASVRGPGSLAYPGVRTHGALDSVTGPKVGARGLAASSSSSSLADTFEHVIEELLEEDQKVRPHEENAKDADLYTSRVMLSSQVPLEPPLLFLLEEYKNYLDAANMSMRVRRHSDPARRGELSVCDSISEWVTAADKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKCNPMGYTKEGCRGIDKRHWNSQCRTTQSYVRALTMDSKKRIGWRFIRIDTSCVCTLTIKRGR