Sequence details NCBI ID: XM_004851378.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Lmo1
Gene Name LIM domain only 1 (rhombotin 1), transcript variant X1
Entrez Gene ID 101723008

Database interlinks

Part of NW_004624766.1 (Scaffold)

For more information consult the page for NW_004624766.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

LMO1 ENSCPOG00000023026 (Guinea pig)

Gene Details

LIM domain only 1 (rhombotin 1)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000018772, Guinea pig)

Protein Percentage 100.0%
CDS Percentage 96.79%
Ka/Ks Ratio 0.001 (Ka = 0.0003, Ks = 0.252)

LMO1 ENSG00000166407 (Human)

Gene Details

LIM domain only 1 (rhombotin 1)

External Links

Gene Match (Ensembl Protein ID: ENSP00000338207, Human)

Protein Percentage 100.0%
CDS Percentage 95.73%
Ka/Ks Ratio 0.001 (Ka = 0.0003, Ks = 0.3001)

Lmo1 ENSMUSG00000036111 (Mouse)

Gene Details

LIM domain only 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000037079, Mouse)

Protein Percentage 98.72%
CDS Percentage 94.44%
Ka/Ks Ratio 0.01525 (Ka = 0.0054, Ks = 0.353)

Lmo1 ENSRNOG00000014629 (Rat)

Gene Details

LIM domain only 1 (Lmo1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000019690, Rat)

Protein Percentage 99.31%
CDS Percentage 93.79%
Ka/Ks Ratio 0.00615 (Ka = 0.0028, Ks = 0.457)

Genome Location

Sequence Coding sequence

Length: 471 bp    Location: 427114..393044   Strand: -
Raw sequence   
>XM_004851378.1
ATGATGGTGCTGGACAAGGAGGACGGTGTGCCGATGCTCTCCGTCCAGCCCAAAGGGAAGCAGAAGGGATGTGCAGGCTGTAACCGCAAGATCAAGGACCGCTACCTGCTGAAGGCGCTGGACAAGTACTGGCACGAGGACTGCCTCAAATGTGCCTGCTGTGACTGCCGCCTGGGTGAGGTGGGCTCCACCCTCTACACCAAGGCCAACCTCATCCTGTGCCGGCGTGACTACCTGAGGCTCTTTGGCACCACCGGAAACTGTGCTGCCTGCAGCAAGCTGATCCCAGCCTTCGAGATGGTGATGCGGGCCCGGGACAATGTGTATCACCTCGACTGCTTCGCCTGCCAGCTCTGCAACCAGAGATTTTGCGTGGGAGACAAATTCTTCCTGAAGAACAACATGATCTTGTGTCAGATGGACTATGAGGAGGGGCAGCTGAACGGCACCTTTGAATCCCAGGTTCAGTAA

Related Sequences

XP_004851435.1 Protein

Lmo1 PREDICTED: rhombotin-1 isoform X1 [Heterocephalus glaber]

Length: 156 aa      View alignments
>XP_004851435.1
MMVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQLNGTFESQVQ