Details from NCBI annotation

Gene Symbol Lsm10
Gene Name LSM10, U7 small nuclear RNA associated, transcript variant X3
Entrez Gene ID 101721611

Database interlinks

Part of NW_004624764.1 (Scaffold)

For more information consult the page for NW_004624764.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

LSM10 ENSCPOG00000008401 (Guinea pig)

Gene Details

LSM10, U7 small nuclear RNA associated

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000019519, Guinea pig)

Protein Percentage 96.72%
CDS Percentage 94.54%
Ka/Ks Ratio 0.07272 (Ka = 0.0149, Ks = 0.2054)

LSM10 ENSG00000181817 (Human)

Gene Details

LSM10, U7 small nuclear RNA associated

External Links

Gene Match (Ensembl Protein ID: ENSP00000319341, Human)

Protein Percentage 92.68%
CDS Percentage 89.43%
Ka/Ks Ratio 0.08299 (Ka = 0.0386, Ks = 0.4648)

Lsm10 ENSMUSG00000050188 (Mouse)

Gene Details

U7 snRNP-specific Sm-like protein LSM10

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000061913, Mouse)

Protein Percentage 88.52%
CDS Percentage 83.33%
Ka/Ks Ratio 0.05502 (Ka = 0.0626, Ks = 1.1376)

Lsm10 ENSRNOG00000025716 (Rat)

Gene Details

LSM10, U7 small nuclear RNA associated (Lsm10), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000038817, Rat)

Protein Percentage 89.34%
CDS Percentage 84.15%
Ka/Ks Ratio 0.06082 (Ka = 0.0575, Ks = 0.9459)

Genome Location

Sequence Coding sequence

Length: 372 bp    Location: 19308962..19306940   Strand: -
>XM_004850962.1
ATGGCAGTGAGCCACTCAGTGAAGGAGCGGACCATCTCCGAGAACAGCCTGATCATCCTGTTGCAGGGCCTTCAGGGGCAGGTGACCAGTGTGGACCTACGGGATGAGAGTGTGGCCCATGGACGCATTGACAACGTCGATGCTTTCATGAACATCCGCCTGGCCAAGGTCACTTACACGGACCGTTGGGGGCATCAGGTTAAGCTGGATGACCTCTTCATAACAGGCCGAAATGTTCGTTACGTCCACATCCCAGATGACGTGAACATCACCGCCACCATTGAGCAACAGTTGCAGATCATCCATCGAGTGCGAAACTTTGGCAGCAAGGGCCAAGGCCGGCAGGAGTTTCCCACCAAAAAGTATAAGTGA

Related Sequences

XP_004851019.1 Protein

Lsm10 PREDICTED: U7 snRNA-associated Sm-like protein LSm10 isoform X3 [Heterocephalus glaber]

Length: 123 aa      View alignments
>XP_004851019.1
MAVSHSVKERTISENSLIILLQGLQGQVTSVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQVKLDDLFITGRNVRYVHIPDDVNITATIEQQLQIIHRVRNFGSKGQGRQEFPTKKYK