Sequence details NCBI ID: XM_004850663.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Arid1a
Gene Name AT rich interactive domain 1A (SWI-like), transcript variant X3
Entrez Gene ID 101715459

Database interlinks

Part of NW_004624764.1 (Scaffold)

For more information consult the page for NW_004624764.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

ARID1A ENSCPOG00000010387 (Guinea pig)

Gene Details

AT rich interactive domain 1A (SWI-like)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000009330, Guinea pig)

Protein Percentage 98.32%
CDS Percentage 95.46%
Ka/Ks Ratio 0.06231 (Ka = 0.0088, Ks = 0.1413)

ARID1A ENSG00000117713 (Human)

Gene Details

AT rich interactive domain 1A (SWI-like)

External Links

Gene Match (Ensembl Protein ID: ENSP00000320485, Human)

Protein Percentage 97.53%
CDS Percentage 94.14%
Ka/Ks Ratio 0.06583 (Ka = 0.0127, Ks = 0.1922)

Arid1a ENSMUSG00000007880 (Mouse)

Gene Details

AT rich interactive domain 1A (SWI-like)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000101517, Mouse)

Protein Percentage 96.68%
CDS Percentage 92.16%
Ka/Ks Ratio 0.05886 (Ka = 0.0166, Ks = 0.2828)

Arid1a ENSRNOG00000006137 (Rat)

Gene Details

AT rich interactive domain 1A (SWI-like) (Arid1a), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000009173, Rat)

Protein Percentage 96.54%
CDS Percentage 91.81%
Ka/Ks Ratio 0.05937 (Ka = 0.0177, Ks = 0.2983)

Genome Location

Sequence Coding sequence

Length: 5736 bp    Location: 10704346..10759631   Strand: +
Raw sequence   
>XM_004850663.1
ATGGATCAGATGGGCAAGATGAGACCTCAGCCATATGGCGGGACTAACCCATACTCACAACAACAGGGACCTCCTTCAGGACCTCAGCAAGGACATGGGTATCCAGGGCAGCCATATGGGTCCCAGACTCCGCAGCGGTACCCAATGACCATGCAGAGCCGGGCGCAGAGTGCCATGGGTGGCCTCTCTTATGCACAGCAGATTCCTCCTTATGGACAACAAGGCCCCAGCGGGTATGGTCAGCAGGGCCAGACTCCATATTACAACCAGCAAAGTCCTCATCCCCAGCAACAGCAGCCACCCTACTCCCAGCAACCACCACCCCAGACCCCTCACGCCCAACCTTCATATCAGCAGCAGCCGCAATCTCAGCCACCACAACTCCAGTCTTCTCAGCCTCCATATTCCCAGCAGCCATCCCAACCTCCACATCAGCAGTCTCCAACTCCATACCCCTCTCAGCAGTCTACGACACAGCAGCACCCCCAGAGCCAGCCTCCCTACTCACAGCCACAGGCACAGTCTCCTTACCAGCAGCAGCAACCTCAGCAGCCAGCATCCTCAACGCTTTCCCAGCAGGCTGCATATCCTCAGCCCCAGTCTCAGCAGCCCCAGCAAACTGCCTATTCCCAGCAGCGCTTCCCTCCACCACAGGAGCTTTCTCAAGATTCATTTGGGTCTCAGGCATCATCAGCTCCCTCAATGACCTCCAGTAAAGGAGGGCAGGAAGATATGAACCTGAGCCTTCAGTCAAGACCCTCCAGCTTGCCTGATCTGTCTGGTTCAATAGACGATCTCCCTATGGGGACGGAAGGAGCTCTGAGTCCTGGAGTGAGCACATCAGGGATTTCCAGCAGCCAAGGAGAGCAGAGTAATCCAGCTCAGTCTCCTTTCTCTCCTCATACTTCCCCTCACCTGCCTGGCATCCGAGGCCCCTCCCCATCCCCTGTTGGCTCTCCCGCCAGTGTTGCTCAGTCTCGCTCAGGACCACTTTCGCCTGCTGCAGTGCCAGGCAACCAGATGCCACCTCGGCCACCCAGTGGCCAGTCAGACAGCATCATGCATCCTTCTATGAACCAATCAAGCATTGCCCAAGATCGAGGTTATATGCAGAGGAACCCCCAGATGCCCCAGTACAGTTCCCCCCAGCCCGGCTCGGCCTTATCTCCACGTCAGCCTTCTGGAGGACAGATGCATACAGGCATGGGTTCCTACCAGCAGAATTCCATGGGGAACTATGGTCCCCAAGGGGGTCAGTATGGCCCACAAGGAGGCTACCCCAGGCAGCCAAACTATAATGCCTTGTCCAATGCCAACTATCCCAGTGCAGGAATGGCTGGAAGCATGAACCCTATGGGTGCTGGAGGTCAGATGCATGGGCAGCCTAGCATCCCACCTTATGGCACACTCCCTCCGGGGAGAATGAGTCATGCCTCCATGGGCAACAGGCCTTATGGCCCTAACATGGCCAATATGCCACCTCAGGTTGGGTCAGGGATGTGTCCCCCACCAGGGGGCATGAATCGAAAAACTCAAGAATCTGCTGTTGCCATGCACGTTGCTGCCAACTCTATCCAAAACAGGCCACCAGGCTACCCCAATATGAATCAAGGGGGCATGATGGGAACTGGACCTCCCTATGGACAAGGGATTAATAGTATGGCTGGCATGATCAACCCTCAGGGACCCCCATATCCCATGGGTGGAACCATGGCCAACAATTCAGCAGGCATGGCAGCCAGCCCAGAGATGATGGGCCTTGGTGAAGTCAAGTTAACTACAGCCACCAAAATGAATAACAAGGCAGACGGGACACCTAAGACAGAATCCAAATCCAAGAAATCCAGTTCCTCTACTACCACCAATGAGAAGATCACTAAATTATATGAGTTGGGTGGAGAGCCTGAGAGGAAGATGTGGGTGGACCGTTACTTAGCCTTCACAGAGGAGAAGGCCATGGGCATGACAAACCTGCCTGCGGTGGGTAGGAAGCCTCTGGACCTCTATCGTCTGTATGTGTCTGTGAAGGAGATTGGTGGATTGACTCAGGTCAACAAGAACAAAAAATGGCGGGAACTTGCGACCAACCTCAATGTGGGCACATCGAGCAGTGCTGCCAGCTCCTTGAAAAAGCAGTATATCCAGTGTCTCTATGCCTTTGAGTGCAAGATTGAACGGGGAGAAGACCCTCCCCCAGACATCTTTGCAGCTGCTGATTCCAAGAAGTCTCAACCCAAGATCCAGCCTCCCTCTCCTGCGGGATCAGGGTCTATGCAGGGGCCCCAGACTCCTCAGTCAACCAGCAGTTCCATGGCAGAAGGAGGAGACCTGAAGCCACCAACTCCAGCATCCACACCACACAGCCAGATCCCCCCCTTGCCAGGCATGAGCAGGAGCAATTCAGTCGGAATCCAGGATACCTTTCCTGATGGAAGTGACCCCACATTCCAAAAGCGGAATTCCATGACTCCAAACCCTGGGTACCAGCCCAGTATGAATACCTCTGACATGATGGGGCGCATGTCCTACGAGCCAAATAAGGATCCTTATGGCAGCATGAGGAAAGCTCCAGGGAGTGATCCCTTCATGTCCTCAGGTCAGGGCCCCAACGGCAGCGGGATGGGTGACCCCTACAGCCGTGCTGCTGGCCCTGGGCTCGGAAATGTGGCTATGGGACCACGACAGCACTATCCCTATGGAGGTCCTTATGACAGAGTGAGGACGGAGCCTGGAATAGGACCTGAGGGAAACATGGGCACTGGGGCCCCCCAGCCGAATCTCATGCCTTCCACCCCAGATTCGGGGATGTATTCTCCTAGCCGCTACCCCCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAACGACATGATTCCTATGGCAATCAGTTCTCCACTCAAGGCACCCCTTCTGGCAGTCCCTTCCCCAGCCAGCAGACCACAATGTATCAGCAGCAGCAGCAGAATTATAAGCGGCCAATGGATGGTACATATGGCCCTCCTGCCAAGCGGCATGAAGGGGAGATGTACAGTGTGCCATACAGCACTGGGCAGGGGCAGCCTCAGCAGCAGTTGCCCCCAGCCCAGCCCCAGCCTGCCAGCCAACAACAAGCTGCCCAGCCTTCCCCTCAGCAAGATGTGTACAACCAGTATGGCAATGCCTATCCTGCTACTGCCACTGCTGCTACTGAGCGTCGACCAGCAGGCGGTCCCCAGAACCAATTTCCATTCCAGTTTGGCCGAGACCGTGTTTCTGCACCCCCTGGCTCCAATGCCCAGCAGAACATGCCACCGCAGATGATGAGTGGCCCCATACAGGCATCAGCTGAGGTTGCTCAGCAGGGCACCATGTGGCAGGGTCGTAATGACATGACCTATAATTACGCCAACAGGCAGAGCACGGGCTCTGCCCCGCAGGGTCCTGCTTATCATGGTGTTAACCGAACAGACGAAATGCTGCACACGGATCAGAGGGCCAACCATGAAGGCCCATGGCCTTCTCATGGCACACGCCAGCCTCCATATGGTCCCTCTACCCCTGTACCCCCCATGACAAGGCCCCCTCCATCTAACTATCAGCCCCCGCCAAGCATGCAGAATCACATTCCTCAGGTATCCAGCCCCGCTCCCCTGCCCCGGCCAATGGAGAATCGTACCTCTCCTAGCAAGTCTCCATTCCTGCACTCTGGGATGAAAATGCAGAAAGCAGGCCCACCAGTACCTGCCTCACACATAGCACCTGCCCCTGTGCAGCCCCCGATGATTCGGCGGGATATCACCTTCCCACCTGGCTCTGTTGAAGCCACACAGCCTGTGTTGAAGCAGAGAAGGCGGCTCACAATGAAAGACATTGGAACACCGGAGGCATGGCGGGTAATGATGTCCCTCAAGTCTGGGCTCCTGGCAGAGAGCACATGGGCATTAGACACCATTAACATTCTACTATATGATGACAACAGCATCATGACCTTCAATCTCAGTCAGCTCCCAGGGTTACTAGAGCTCCTTGTGGAATACTTCCGACGATGCCTGATTGAGATCTTTGGCATTTTAAAAGAGTATGAGGTGGGTGACCCAGGACAGAGAACGCTACTGGACCCTGGGAGATTCAACAAGGTGTCTAGTCCAACCCCAACAGAGGGTGAGGAAGAAGAAGAACTTCTAGCTCCTAAACTAAAGGAGGATGAAGAGGAAGAAGTAATTGAAAATGATGAGGAGATGGCTTTTTTGGGTAAGGACAAGCCAGCGTCAGAGAACAGTGAAGAGAAGCTAATCAGTAAGTTTGACAAGCTTCCAGTAAAGGTTGTACAGAAAAATGACCCATTTGTGGTGGACTGTTCAGATAAGCTTGGGCGGGTGCAGGAGTTTGATAGTGGCCTGCTGCACTGGCGGATTGGTGGCGGGGACACTACTGAACATATCCAGACCCACTTTGAAAGCAAGACAGAGCTGCTGCCTTCCCGGTCTCATGTGCCCTGCTCAACAGCCCCCCGGAAACATGTCATAACAGTAGAGGGTACTCCTGGGACGACAGAACAGGAGGGACCCCCACCTGATGGCCTTCCAGAAAAACGGATCACAGCCACCATGGATGATATGTTATCTACTCGGTCTAGCACACTGACCGAGGAGGGAGCCAAGAGTGCAGAGGCCACTAAGGAAAGCAGCAAGTTTCCATTTGGCATTAGCCCAGCACAGAGCCACCGGAACATCAAGATCCTAGAGGATGAACCTCACAGTAAGGATGAAACTCCATTGTGTACCCTTCTGGACTGGCAGGATTCACTTGCCAAGCGCTGCATCTGTGTCTCCAATACCATCCGAAGCCTGTCATTTGTGCCAGGCAACGACTTTGAGATGTCTAAACACCCAGGGCTGCTGCTCATCCTGGGCAAGCTGATCCTGCTGCACCACAAGCATCCAGAACGGAAGCAGGCACCACTAACTTATGAGAAAGAGGAGGAACAGGACCAAGGGGTGAGCTGTAACAAAGTGGAGTGGTGGTGGGACTGCTTGGAGATGCTCCGGGAAAACACCTTGGTCACACTCGCCAACATCTCAGGGCAGTTAGACCTCTCCCCATACCCTGAGAGCATTTGTCTACCTGTTCTGGATGGACTCCTACACTGGGCAGTTTGCCCGTCAGCTGAAGCCCAAGACCCTTTCTCCACTCTGGGCCCCAATGCCGTCCTTTCCCCCCAGAGACTGGTGTTAGAAACCCTCAGCAAACTCAGTATCCAGGACAACAATGTGGACCTGATCCTAGCCACACCCCCCTTCAGCCGCCTGGAGAAGTTGTATAGCACCATGGTGCGCTTCCTCAGTGACCGAAAGAACCCAGTATGCCGGGAGATGGCGGTGGTACTGCTAGCCAACCTGGCACAGGGGGACAGCCTGGCAGCCCGTGCCATCGCAGTGCAGAAGGGCAGCATTGGCAACCTCTTGGGCTTCCTCGAGGACAGTCTTGCTGCCACACAGTTCCAGCAGAGTCAGGCCAGCCTCCTCCACATGCAGAACCCACCCTTTGAGCCAACTAGTGTGGACATGATGCGGCGGGCTGCCCGTGCACTGCTTGCCTTGGCCAAGGTGGACGAAAACCACTCAGAGTTCACTCTGTATGAGTCACGGCTGTTGGACATCTCCGTGTCACCGTTGATGAACTCATTGGTTTCGCAAGTCATTTGTGATGTACTGTTTTTAATTGGCCAGTCATGA

Related Sequences

XP_004850720.1 Protein

Arid1a PREDICTED: AT-rich interactive domain-containing protein 1A isoform X3 [Heterocephalus glaber]

Length: 1911 aa      View alignments
>XP_004850720.1
MDQMGKMRPQPYGGTNPYSQQQGPPSGPQQGHGYPGQPYGSQTPQRYPMTMQSRAQSAMGGLSYAQQIPPYGQQGPSGYGQQGQTPYYNQQSPHPQQQQPPYSQQPPPQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPPHQQSPTPYPSQQSTTQQHPQSQPPYSQPQAQSPYQQQQPQQPASSTLSQQAAYPQPQSQQPQQTAYSQQRFPPPQELSQDSFGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLPDLSGSIDDLPMGTEGALSPGVSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQMPPRPPSGQSDSIMHPSMNQSSIAQDRGYMQRNPQMPQYSSPQPGSALSPRQPSGGQMHTGMGSYQQNSMGNYGPQGGQYGPQGGYPRQPNYNALSNANYPSAGMAGSMNPMGAGGQMHGQPSIPPYGTLPPGRMSHASMGNRPYGPNMANMPPQVGSGMCPPPGGMNRKTQESAVAMHVAANSIQNRPPGYPNMNQGGMMGTGPPYGQGINSMAGMINPQGPPYPMGGTMANNSAGMAASPEMMGLGEVKLTTATKMNNKADGTPKTESKSKKSSSSTTTNEKITKLYELGGEPERKMWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPDIFAAADSKKSQPKIQPPSPAGSGSMQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQIPPLPGMSRSNSVGIQDTFPDGSDPTFQKRNSMTPNPGYQPSMNTSDMMGRMSYEPNKDPYGSMRKAPGSDPFMSSGQGPNGSGMGDPYSRAAGPGLGNVAMGPRQHYPYGGPYDRVRTEPGIGPEGNMGTGAPQPNLMPSTPDSGMYSPSRYPPQQQQQQQQQQQQQQQQQQRHDSYGNQFSTQGTPSGSPFPSQQTTMYQQQQQNYKRPMDGTYGPPAKRHEGEMYSVPYSTGQGQPQQQLPPAQPQPASQQQAAQPSPQQDVYNQYGNAYPATATAATERRPAGGPQNQFPFQFGRDRVSAPPGSNAQQNMPPQMMSGPIQASAEVAQQGTMWQGRNDMTYNYANRQSTGSAPQGPAYHGVNRTDEMLHTDQRANHEGPWPSHGTRQPPYGPSTPVPPMTRPPPSNYQPPPSMQNHIPQVSSPAPLPRPMENRTSPSKSPFLHSGMKMQKAGPPVPASHIAPAPVQPPMIRRDITFPPGSVEATQPVLKQRRRLTMKDIGTPEAWRVMMSLKSGLLAESTWALDTINILLYDDNSIMTFNLSQLPGLLELLVEYFRRCLIEIFGILKEYEVGDPGQRTLLDPGRFNKVSSPTPTEGEEEEELLAPKLKEDEEEEVIENDEEMAFLGKDKPASENSEEKLISKFDKLPVKVVQKNDPFVVDCSDKLGRVQEFDSGLLHWRIGGGDTTEHIQTHFESKTELLPSRSHVPCSTAPRKHVITVEGTPGTTEQEGPPPDGLPEKRITATMDDMLSTRSSTLTEEGAKSAEATKESSKFPFGISPAQSHRNIKILEDEPHSKDETPLCTLLDWQDSLAKRCICVSNTIRSLSFVPGNDFEMSKHPGLLLILGKLILLHHKHPERKQAPLTYEKEEEQDQGVSCNKVEWWWDCLEMLRENTLVTLANISGQLDLSPYPESICLPVLDGLLHWAVCPSAEAQDPFSTLGPNAVLSPQRLVLETLSKLSIQDNNVDLILATPPFSRLEKLYSTMVRFLSDRKNPVCREMAVVLLANLAQGDSLAARAIAVQKGSIGNLLGFLEDSLAATQFQQSQASLLHMQNPPFEPTSVDMMRRAARALLALAKVDENHSEFTLYESRLLDISVSPLMNSLVSQVICDVLFLIGQS