Sequence details NCBI ID: XM_004850542.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Kdm1a
Gene Name lysine (K)-specific demethylase 1A, transcript variant X2
Entrez Gene ID 101706376

Database interlinks

Part of NW_004624764.1 (Scaffold)

For more information consult the page for NW_004624764.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

KDM1A ENSCPOG00000010744 (Guinea pig)

Gene Details

lysine (K)-specific demethylase 1A

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000009645, Guinea pig)

Protein Percentage 93.87%
CDS Percentage 91.44%
Ka/Ks Ratio 0.17277 (Ka = 0.0423, Ks = 0.245)

KDM1A ENSG00000004487 (Human)

Gene Details

lysine (K)-specific demethylase 1A

External Links

Gene Match (Ensembl Protein ID: ENSP00000383042, Human)

Protein Percentage 99.08%
CDS Percentage 92.96%
Ka/Ks Ratio 0.01761 (Ka = 0.005, Ks = 0.2825)

Kdm1a ENSMUSG00000036940 (Mouse)

Gene Details

lysine (K)-specific demethylase 1A

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000111977, Mouse)

Protein Percentage 98.59%
CDS Percentage 90.68%
Ka/Ks Ratio 0.01684 (Ka = 0.0068, Ks = 0.405)

Kdm1a ENSRNOG00000022372 (Rat)

Gene Details

lysine (K)-specific demethylase 1A (Kdm1a), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000052846, Rat)

Protein Percentage 99.47%
CDS Percentage 91.32%
Ka/Ks Ratio 0.0065 (Ka = 0.0026, Ks = 0.3964)

Genome Location

Sequence Coding sequence

Length: 2616 bp    Location: 7664570..7742564   Strand: +
Raw sequence   
>XM_004850542.1
ATGTTGTCTGGAAAGAAGGCAGCTGCCGCGGCGGCGGCGGCGGCAGCGGCGGCCGGAACGGAGGCCGGACCTGGGGCGGCGGGCGGCGCTGAGAACGGCTCCGAGGTGGCCGCGCCACCTGCGGGCCTGTCGGGCCCCTCTGAGGTCGGGCCTGGGGCGGCCGGGGAGCGCACTCCCCGCAAGAAGGAGCCTCCGCGGGCTTCGCCTCCCGGCGGCCTGGCCGAGCCGCCGGGGTCCGCCGGGCCTCAGGCCGGACCCACGGTGGTGCCCGGGTCTGCGACCCCCATGGAGACGGGAATATCAGAGACTCCGGAGGGGCGACGGACCAGCCGGCGCAAGCGAGCCAAGGTGGAGTACCGAGAGATGGATGAGAGCTTGGCGAACCTCTCAGAAGATGAATATTATTCAGAAGAAGAGAGGAATGCTAAAGCAGAGAAAGAAAAGAAGCTTCCTCCACCACCCCCTCAAGCCCCACCTGAGGAAGAAAATGAAAGTGAGCCTGAAGAACCATCTGGGCAAGCAGGAGGACTTCAAGACGACAGTTCTGGAGGGTATGGAGACGGCCAAGCATCAGGTGTGGAGGGTGCAGCTTTCCAGAGCAGACTTCCCCACGACCGGATGACCTCTCAGGAAGCAGCCTGTTTCCCAGACATCATCAGTGGGCCTCAGCAGACCCAGAAGGTTTTTCTGTTTATCAGAAACCGCACATTACAGTTGTGGTTGGATAATCCAAAGATTCAGCTGACATTTGAGGCTACTCTCCAACAATTAGAAGCGCCTTATAACAGTGATACTGTGCTTGTCCATCGAGTTCACAGTTATTTAGAGCGTCATGGTCTTATCAACTTTGGCATCTATAAAAGGATAAAACCCTTACCAACTAAAAAGACAGGAAAGGTAATTATTATAGGCTCTGGAGTCTCAGGCTTGGCAGCAGCCCGACAACTACAAAGTTTTGGAATGGATGTCACACTTCTGGAAGCCAGGGATCGAGTGGGTGGACGAGTTGCTACATTTCGAAAAGGAAACTATGTAGCAGATCTTGGAGCCATGGTAGTAACAGGTCTTGGAGGGAATCCCATGGCTGTGGTCAGCAAACAAGTAAATATGGAACTGGCCAAGATCAAGCAAAAATGCCCACTGTATGAAGCCAATGGACAAGCTGTTCCTAAAGAGAAAGATGAAATGGTAGAGCAAGAATTTAACCGGTTGCTAGAAGCTACATCTTACCTTAGTCATCAACTAGACTTCAATGTCCTCAATAATAAGCCTGTGTCCCTTGGCCAGGCATTGGAAGTTGTCATTCAGTTACAAGAAAAGCATGTTAAAGACGAGCAGATTGAACATTGGAAGAAGATAGTGAAAACTCAGGAAGAACTGAAAGAACTTCTTAATAAGATGGTAAATTTGAAAGAGAAAATTAAAGAACTCCATCAGCAGTACAAGGAAGCATCTGACGTGAAGCCACCCAGAGACATTACTGCCGAGTTCTTAGTGAAAAGCAAGCACAGGGATCTGACTGCCCTTTGCAAGGAATATGATGAATTAGCTGAAACACAAGGAAAACTAGAAGAAAAACTTCAAGAATTGGAAGCCAATCCCCCGAGTGATGTATATCTCTCATCAAGAGACAGACAGATACTTGATTGGCATTTTGCAAATCTTGAATTTGCTAATGCCACACCTCTGTCTACCCTCTCCCTTAAACATTGGGATCAGGATGATGACTTTGAGTTTACTGGCAGCCATTTGACAGTGAGGAATGGTTATTCCTGTGTGCCGGTGGCGTTAGCAGAAGGCCTGGACATTAAACTGAATACAGCAGTGCGACAGGTTCGCTACACAGCCTCAGGATGTGAAGTGATCGCTGTGAATACCCGCTCCACAAGTCAAACCTTTATTTATAAGTGTGATGCAGTGCTCTGTACTCTTCCCCTGGGTGTGTTGAAGCAGCAGCCACCAGCTGTTCAGTTTGTGCCACCTCTTCCTGAGTGGAAGACGTCTGCAGTCCAAAGGATGGGATTTGGCAACCTTAACAAGGTGGTGTTATGTTTTGACCGAGTGTTCTGGGATCCAAGTGTCAATTTGTTCGGCCATGTTGGCAGCACGACTGCCAGCAGAGGGGAGCTCTTCCTCTTCTGGAACCTCTATAAAGCTCCAATACTGTTGGCATTGGTGGCAGGAGAAGCTGCTGGCATCATGGAAAACATAAGTGATGATGTGATTGTTGGCCGGTGCCTCGCCATTCTCAAGGGGATTTTTGGTAGCAGTGCAGTGCCCCAGCCCAAGGAAACTGTGGTGTCCCGCTGGCGTGCTGATCCCTGGGCCCGGGGCTCGTATTCCTATGTAGCTGCAGGATCATCTGGAAATGACTATGATCTGATGGCGCAGCCAATCACTCCTGGCCCCTCAATTCCAGGTGCCCCGCAGCCAATCCCACGCCTCTTCTTTGCCGGAGAGCATACAATCCGGAACTACCCAGCCACAGTCCATGGTGCTCTGCTGAGTGGGCTGCGAGAAGCAGGAAGGATTGCAGACCAGTTCTTGGGGGCCATGTACACTTTGCCTCGCCAGGCCACACCAGGCGTCCCTGCACAGCAGTCTCCAAGCATGTGA

Related Sequences

XP_004850599.1 Protein

Kdm1a PREDICTED: lysine-specific histone demethylase 1A isoform X2 [Heterocephalus glaber]

Length: 871 aa      View alignments
>XP_004850599.1
MLSGKKAAAAAAAAAAAAGTEAGPGAAGGAENGSEVAAPPAGLSGPSEVGPGAAGERTPRKKEPPRASPPGGLAEPPGSAGPQAGPTVVPGSATPMETGISETPEGRRTSRRKRAKVEYREMDESLANLSEDEYYSEEERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSGQAGGLQDDSSGGYGDGQASGVEGAAFQSRLPHDRMTSQEAACFPDIISGPQQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMAVVSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASDVKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFLGAMYTLPRQATPGVPAQQSPSM