Sequence details NCBI ID: XM_004850291.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol unclassified transcription discrepancy
Gene Name mRNA
Entrez Gene ID 101711671

Database interlinks

Part of NW_004624763.1 (Scaffold)

For more information consult the page for NW_004624763.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

MATN2 ENSCPOG00000003062 (Guinea pig)

Gene Details

matrilin 2

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000002772, Guinea pig)

Protein Percentage 87.83%
CDS Percentage 88.35%
Ka/Ks Ratio 0.16932 (Ka = 0.07, Ks = 0.4132)

MATN2 ENSG00000132561 (Human)

Gene Details

matrilin 2

External Links

Gene Match (Ensembl Protein ID: ENSP00000430487, Human)

Protein Percentage 83.82%
CDS Percentage 83.16%
Ka/Ks Ratio 0.13773 (Ka = 0.0942, Ks = 0.6843)

Matn2 ENSMUSG00000022324 (Mouse)

Gene Details

matrilin 2

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000022947, Mouse)

Protein Percentage 80.81%
CDS Percentage 79.64%
Ka/Ks Ratio 0.12927 (Ka = 0.1181, Ks = 0.9133)

Matn2 ENSRNOG00000006060 (Rat)

Gene Details

Protein Matn2

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000008361, Rat)

Protein Percentage 81.35%
CDS Percentage 80.51%
Ka/Ks Ratio 0.14127 (Ka = 0.1149, Ks = 0.8132)

Genome Location

Sequence Coding sequence

Length: 2889 bp    Location: 5049568..5198541   Strand: +
Raw sequence   
>XM_004850291.1
ATGGGCAAGATACTGGCGGGCTGCTTGCTGCTTCTGCTCCTCCTTGGACAGACCCTGGTGTTCCCAGCTGCGGCCGGACAGCGGCCTCACGCCAGGCCTCCCGCCAAGGGCAGACAAGCGCGGACCCACTCACAGACGGCCCTGCTGGAGAGCTCCTGCGAGAATAAGCGGGCAGACCTGGTCTTCATCATTGACAGCTCCCGCAGCGTCAACACCCAGGACTATGCGAAGGTGAAGGAGTTCATCGTGGACATCTTGCAATTCCTGGACATTGGTCCTGAGGTCACCCGGGTGGGGCTGCTCCAATATGGCAGCACAGTCAAGAATGAGTTCTCCCTCAAGACCTTCAAGAGGAAGTCTGAGGTGGAGCGGGCTGTGAAGAGGATGCGGCATCTGTCCACGGGCACCATGACGGGGCTGGCCATCCAGTATGCCCTGAACATCGCCTTCTCAGAAGCAGAGGGGGCCCGGCCCCTCAGGGAGAATGTGCCACGGGTCATAATGATTGTGACAGATGGGAGGCCACAGGACTCGGTGGCTGAAGTGGCTGCAAAGGCACGGGACACGGGCATCCTGATCTTCGCCATTGGCGTGGGCCAAGTGGACTTCAACACACTCAAGGCTATTGGGAGTGAACCCCACGAGGACCATGTCTTCTTGGTGGCCAACTTTAGCCAGATAGAGTCGCTGACCTCAGTGTTCCAGAACAAGTTGTGTACCGTCTACATGTGCAGCATCCTGGAGCACAACTGTGCCCACTTCTGCATCAACACGCCCGGCTCGTATGTCTGCAGGTGCAAACAAGGGTACATTCTCAACGTGGATCAGAAGACCTGCAGAATCCAGGACCTGTGTGCCGTGGAGGACCACGCCTGTGAGCAGCTCTGTGTGAATGTGCCCGGCTCCTTTGTCTGCCAGTGCTACAGTGGGTACTCGCTGGCCGAGGACGGGAAGAGGTGCGTGGCTGTGGACTACTGCGGCTTGGAAGACCATGGATGTGAACATGAGTGTGTCAATGCAGACGGCTCCTACTCGTGCAAATGCCATGAAGGATTTGCTCTTAACCCAGATAAAAAAACATGCACAAAGATAGACTTCTGCGCCTCCACTAATCATGGTTGCCAGCACGAATGTGCCAACACAGGTGACTCCTACTCTTGCCGCTGCCTGAAAGGCTTTACCCTGAATCCAGACAAGAAAACCTGCAGAAGAATCAACTACTGTGCGCTGAACAAACCGGGCTGTGAACACGAATGTGTCAACACGGAAGAGGGCCACTACTGCCGCTGCCGCCGGGGCTACATCCTGGACCCCAACGGCAGGACCTGCAGCCGGGTGGACCACTGCGCGCAGAAGGACCATGGCTGTGAGCAGCTGTGCCTGAACACGGAGGAGTCCTTCGTCTGCCAGTGCTCAGAAGGCTTCCTCATCAACGAGGACCTCAAAACCTGCTCTAGGGCGGATTACTGCCTGCTGAGCGACCATGGCTGTGAATACGCCTGCGTCAACACAGACAGGTCCTTCGCCTGTCAGTGTCCCGAGGGCCACGTGCTCCGCAGTGACGGGAAGACCTGTGCAACCATTCGAGCCCAGATGGCTGCTTCCCTTCTGCCCTCAAACCCCCTTCTGGAAATGGCCTTGGCTGTTTCCACAGAGGGCCTCACTGCAGCTGTGGAACTGGACACAGGCCTGGATCTTCGCATGCTGCTCTGCTTCCAGTGTGAAAAAGACATCTGCCAAGACGTGGCCCACAGCTGTGAGNNCAGCACCAAGTTGTACACCTGCAAGAGCTTGGAGGGGTTCAAGCTGGCCGAGGACAGGAAGCACTGCAGAAGAAGGAAGGACGCCTGCACTTCGAACTCACACGGCTGCGAGCACATCTGCGTGAACAAGGGCAACTCCTACGTCTGCAAGTGCTCCCAGGGCTTCATCCTCGCCGAGGATAGACGGCGCTGCAAGAGATGCACCGAGGGCCCAATTGACGTGGTCTTTGTGATTGACGGGTCCAAGAGCCTCGGCGAAGAGAATTTTGAGATCGTGAAGCAGTTTGTCACTGGAATCATAGATTCCTTGGCCATTTCCCCCAAGGCCGCCCGCGTGGGGCTGCTCCAGTACTCCACGCAGGTGCGCCCCGAGTTCACCCTGCGCAGCTTCCACTCGGCCAAGGACCTGCGGAAAGCTGTGGCCCACATGAAGTACATGGGCAAGGGCTCCATGACCGGGCTGGCCCTGAAGCACATGTTCGAGAGAAGTTTCACTCCCTCGGAGGGTGCCCGGCCCCTGTCTGCACGCGTGCCCAGAGTGGCCATTGTGTTCACCGACGGCCGGGCCCAGGACGACGTCTCCGAGTGGGCCAGCAAGGCCAAGGCCCATGGTATCGCCATGTACGCCGTCGGCATAGGAAAGGCCATTGAGGAGGAGCTGCAGGAGATTGCCTCAGAGCCCACCACCAAGCACCTCTTCTATGCAGAGGACCTCAGCAGCATGGGCGAGATCAGCAGGAAGCTCAAGGAGGGCATCTGTGGAGCTCTAGAGGACTCTGATGGGAGACAGGACTCACCAGCAGAGGAGCTGCCAAAGAGGGTCCACCAGCCAACAGAATCTGAGCCAGTCACCATAAATATACAAGACCTACTTTCCTGTTCTAATTTTGCAGTGCAACATCGGTATCTGTTTGAAGAAGACAATCTTTCGCAGTCTACACGAAAGCTTTTCCACTCCACAAAACCTTCAGGGAAAGTTCTGGAAGAAAACCATGATCAATGCAAATGTGAAAACCTTATAATGTTCCAGAACCTTGCGAATGAAGAAGTCAGAAAACTAACACAGCGCTTAGAAGAAATGACAGAGAGAATGGAAGCTTTGGAAAATCGCCTGAGAGCCAGATGA

Related Sequences

XP_004850348.1 Protein

unclassified transcription discrepancy PREDICTED: LOW QUALITY PROTEIN: matrilin-2 [Heterocephalus glaber]

Length: 962 aa      View alignments
>XP_004850348.1
MGKILAGCLLLLLLLGQTLVFPAAAGQRPHARPPAKGRQARTHSQTALLESSCENKRADLVFIIDSSRSVNTQDYAKVKEFIVDILQFLDIGPEVTRVGLLQYGSTVKNEFSLKTFKRKSEVERAVKRMRHLSTGTMTGLAIQYALNIAFSEAEGARPLRENVPRVIMIVTDGRPQDSVAEVAAKARDTGILIFAIGVGQVDFNTLKAIGSEPHEDHVFLVANFSQIESLTSVFQNKLCTVYMCSILEHNCAHFCINTPGSYVCRCKQGYILNVDQKTCRIQDLCAVEDHACEQLCVNVPGSFVCQCYSGYSLAEDGKRCVAVDYCGLEDHGCEHECVNADGSYSCKCHEGFALNPDKKTCTKIDFCASTNHGCQHECANTGDSYSCRCLKGFTLNPDKKTCRRINYCALNKPGCEHECVNTEEGHYCRCRRGYILDPNGRTCSRVDHCAQKDHGCEQLCLNTEESFVCQCSEGFLINEDLKTCSRADYCLLSDHGCEYACVNTDRSFACQCPEGHVLRSDGKTCATIRAQMAASLLPSNPLLEMALAVSTEGLTAAVELDTGLDLRMLLCFQCEKDICQDVAHSCEXSTKLYTCKSLEGFKLAEDRKHCRRRKDACTSNSHGCEHICVNKGNSYVCKCSQGFILAEDRRRCKRCTEGPIDVVFVIDGSKSLGEENFEIVKQFVTGIIDSLAISPKAARVGLLQYSTQVRPEFTLRSFHSAKDLRKAVAHMKYMGKGSMTGLALKHMFERSFTPSEGARPLSARVPRVAIVFTDGRAQDDVSEWASKAKAHGIAMYAVGIGKAIEEELQEIASEPTTKHLFYAEDLSSMGEISRKLKEGICGALEDSDGRQDSPAEELPKRVHQPTESEPVTINIQDLLSCSNFAVQHRYLFEEDNLSQSTRKLFHSTKPSGKVLEENHDQCKCENLIMFQNLANEEVRKLTQRLEEMTERMEALENRLRAR