Sequence details NCBI ID: XM_004850106.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Cdh17
Gene Name cadherin 17, LI cadherin (liver-intestine)
Entrez Gene ID 101725799

Database interlinks

Part of NW_004624763.1 (Scaffold)

For more information consult the page for NW_004624763.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CDH17 ENSCPOG00000006582 (Guinea pig)

Gene Details

cadherin 17, LI cadherin (liver-intestine)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000005928, Guinea pig)

Protein Percentage 82.77%
CDS Percentage 87.15%
Ka/Ks Ratio 0.39513 (Ka = 0.1045, Ks = 0.2646)

CDH17 ENSG00000079112 (Human)

Gene Details

cadherin 17, LI cadherin (liver-intestine)

External Links

Gene Match (Ensembl Protein ID: ENSP00000027335, Human)

Protein Percentage 81.57%
CDS Percentage 84.3%
Ka/Ks Ratio 0.28737 (Ka = 0.1156, Ks = 0.4024)

Cdh17 ENSMUSG00000028217 (Mouse)

Gene Details

cadherin 17

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000029871, Mouse)

Protein Percentage 78.48%
CDS Percentage 81.34%
Ka/Ks Ratio 0.25776 (Ka = 0.1367, Ks = 0.5305)

Cdh17 ENSRNOG00000015562 (Rat)

Gene Details

cadherin 17 (Cdh17), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000021612, Rat)

Protein Percentage 77.51%
CDS Percentage 80.21%
Ka/Ks Ratio 0.22915 (Ka = 0.1406, Ks = 0.6138)

Genome Location

Sequence Coding sequence

Length: 2493 bp    Location: 1602328..1543564   Strand: -
Raw sequence   
>XM_004850106.1
ATGACTCCAGCCCGTCTTCACTCCCTGTGTCTCCTTGTACTTTATTTGACAGCTGGAAATGGCCAAGATGGGAAATTTAGTGGACCCTTGAAGCCCATGACTTTTTCCATTTATGAAGGCCAAGAACCAAGTCAAGTCATATTCCAGTTTAAGGCCAATCCTCCTGCTGTGACTTTTGAACTATCTGGGGAGACAGATGGCATATTTAAGATAGAACCTGATGGACTTCTGTATTACATTACAGCCCTGGACAGGGAAACAAGAGCCACTCACAATCTCCAGATTGCAGCCTTGGATGCTCAAGGAGTGACAGTGGAGGGTCCAGTCCCCATCACCATAGAAGTGAAGGACGTCAATGACAATCGTCCCATGTTTTCTCAGGCAAAGTATGAAGGCTCAGTGAGGCAGAACTCTCGCCCAGGAAAGCCTTTCATGTATGTCAATGCTACGGACCTGGATGATCCAGCCACTCCCAATGGCCATCTTTTTTATCAAATTGTCATTCAACTCCCCAAGATCGACAATATTATGTACTTTCAGATCAACAACAAAACAGGGGCAATATCACTTACCCGACAAGGGGCTCTGGAACTGGATCCTGTTAAGAACCCTTCCTACAATCTGGTGGTCTCAGTGAAGGACATGGGAGGCGAGAGTGAGAACTCCTTCAGTGATACTGCATCTGTAGATGTTACAGTGAAGGAGAATATTTGGAAAACACCAGAGCCTGTGGAGATTATGGAAAATTCAACCGATCCTCACCCTGTGAAAATCACCCAGGTGCGGTGGAATGATCCAGGTGCGCAGTATTCCTTAGTTGAAAAGGAAAAGCTTCCAAGATTCCCATTTTCAATTGACCAGGAAGGAGATATTTATGTGACTCAACCCTTGGACCGAGAAGAAAAGGATTCATATGTTTTTTATGCAGCTGCAAAGGATGAGTATGGAAAACTACTTTCGTACCCACTGCAAATTCATGTGAAAGTTAAAGACATTAATGATAATTCACCGTCATGTCCATCTCCAGTGACTGCATTTGAGGTCCAGGAGAATGAAGCATTGGGAAGCAGTATTGGCATCTTTACCGCCCATGACATGGATGAAGCAAACACTATCAACAGCATCTTGAAGTATAAAATTGTGGAACAAACCCCCAAAGTTCCCATAGATGGACTCTTTTTGGTTGAAGAATATGAGGGAAAGGTCCAATTAGCTAGACGGTCCTTGAAAAAGCAAGATGCTCCTCAGTACAACTTAACAGTGGAGGTGTCTGACAAAGATTTCAAGATCTTCTGTGCTATACAAATCAACATCATTGATATCAATGATCAGATTCCCATCTTTGAAAAATCAGATTATGGAAACCTGACTCTTCGTGAAGACACAGCTGTTGGGTATACCATCTTAACCATCCAAGCCACAGATGCTGATGAGCCATTTACTGGGAGTTCTAAAATCCTGTATCAAATTACACAGGGGGACAGCGAGGGAAGACTGGGGATTGACACAGATCCCCACACCAATGCAGGATATGTCACAGTTAAAAAGCCTCTGGATTTTGAAACAGCAGCTATTTCCAAAATTGTGGTCCACGCACAAAATCCTGAGCCTCTGGTACCTGGTGTCACATACAACTTGAGTTCTTTCGCCTCCTTCTTTCTTTTTGTGACGGATGTGAATGAAGTACCTGTGTTTTCCCAGCCTGTCTTCCAAGCGGAAGTCAGTGAGGATGTGGCTGTGGGCACTAAAGTGAGCAATGTGACGGCCCAGGATCCCGAAGGTCTGGACATAAGATATTCCCTGAGAGGCGACACAAGAGGTTGGCTTAAAATTGACCCCATCACGGGTGAGATCTTTAGTGTGGCTCCGTTGGACAGGGAAACTGAAAGTGTGTATCGGGTGCAAGTGGTGGCCACTGAAGTAGGCGGGTCCTCCCTGAGCTCCACCTCGTTTTTCCACCTGGCCCTCAAGGATGTGAATGACAACCCCGCAAGGCTGGCCAAGGACTACACAGGCTTGTTCTTCTGCTACCCCCTCAGTGCGCCTGGAAGTTTGGTGTTCGAGGCCACGGATGATGATAAGCAGACATTCCGGGGTTTCCACTTCACATTTGCCCTCGGCAGCGAAAGCTTACAGAACGACTGGGAAGTTTCCAAGATCAACGGCACTTTTGCCAGGCTTTCCACGAAGCACACCAGCTTTGAGGAGAGAGTTTACAAGATACCGATCCGCATCAACGATGGGGGCTGGCCACCTTTGGAAGGGACGGTCAATTTACCAGTTACTTTTTGCACCTGTGTGGAAGGCAGCTGTTTCCGGCCAACAGGTAGACAGGCTGGGATACCCACTGTGGGTCTGGCAGTTGGTATACTCCTGACCACTTTTCTATTCATTGGTATAATTTTAGCAGTTGTGTTTATTCACATCAAGAAGAAAGGCAAGAATAATGTTAAAAATGCTCAGGCATCTGAAGTCAAGCCCCTGAGAAGCTGA

Related Sequences

XP_004850163.1 Protein

Cdh17 PREDICTED: cadherin-17 [Heterocephalus glaber]

Length: 830 aa      View alignments
>XP_004850163.1
MTPARLHSLCLLVLYLTAGNGQDGKFSGPLKPMTFSIYEGQEPSQVIFQFKANPPAVTFELSGETDGIFKIEPDGLLYYITALDRETRATHNLQIAALDAQGVTVEGPVPITIEVKDVNDNRPMFSQAKYEGSVRQNSRPGKPFMYVNATDLDDPATPNGHLFYQIVIQLPKIDNIMYFQINNKTGAISLTRQGALELDPVKNPSYNLVVSVKDMGGESENSFSDTASVDVTVKENIWKTPEPVEIMENSTDPHPVKITQVRWNDPGAQYSLVEKEKLPRFPFSIDQEGDIYVTQPLDREEKDSYVFYAAAKDEYGKLLSYPLQIHVKVKDINDNSPSCPSPVTAFEVQENEALGSSIGIFTAHDMDEANTINSILKYKIVEQTPKVPIDGLFLVEEYEGKVQLARRSLKKQDAPQYNLTVEVSDKDFKIFCAIQINIIDINDQIPIFEKSDYGNLTLREDTAVGYTILTIQATDADEPFTGSSKILYQITQGDSEGRLGIDTDPHTNAGYVTVKKPLDFETAAISKIVVHAQNPEPLVPGVTYNLSSFASFFLFVTDVNEVPVFSQPVFQAEVSEDVAVGTKVSNVTAQDPEGLDIRYSLRGDTRGWLKIDPITGEIFSVAPLDRETESVYRVQVVATEVGGSSLSSTSFFHLALKDVNDNPARLAKDYTGLFFCYPLSAPGSLVFEATDDDKQTFRGFHFTFALGSESLQNDWEVSKINGTFARLSTKHTSFEERVYKIPIRINDGGWPPLEGTVNLPVTFCTCVEGSCFRPTGRQAGIPTVGLAVGILLTTFLFIGIILAVVFIHIKKKGKNNVKNAQASEVKPLRS