Sequence details NCBI ID: XM_004849728.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Sgcb
Gene Name sarcoglycan, beta (43kDa dystrophin-associated glycoprotein), transcript variant X1
Entrez Gene ID 101704913

Database interlinks

Part of NW_004624761.1 (Scaffold)

For more information consult the page for NW_004624761.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SGCB ENSCPOG00000013931 (Guinea pig)

Gene Details

sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000012553, Guinea pig)

Protein Percentage 94.04%
CDS Percentage 93.63%
Ka/Ks Ratio 0.18773 (Ka = 0.0337, Ks = 0.1793)

SGCB ENSG00000163069 (Human)

Gene Details

sarcoglycan, beta (43kDa dystrophin-associated glycoprotein)

External Links

Gene Match (Ensembl Protein ID: ENSP00000370839, Human)

Protein Percentage 97.48%
CDS Percentage 93.29%
Ka/Ks Ratio 0.04849 (Ka = 0.0133, Ks = 0.2744)

Sgcb ENSMUSG00000029156 (Mouse)

Gene Details

sarcoglycan, beta (dystrophin-associated glycoprotein)

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000079937, Mouse)

Protein Percentage 94.67%
CDS Percentage 84.33%
Ka/Ks Ratio 0.0249 (Ka = 0.0261, Ks = 1.0489)

Sgcb ENSRNOG00000002135 (Rat)

Gene Details

sarcoglycan, beta (dystrophin-associated glycoprotein) (Sgcb), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000002921, Rat)

Protein Percentage 94.04%
CDS Percentage 86.21%
Ka/Ks Ratio 0.03922 (Ka = 0.0292, Ks = 0.7457)

Genome Location

Sequence Coding sequence

Length: 960 bp    Location: 17670939..17688667   Strand: +
Raw sequence   
>XM_004849728.1
ATGGCTGCAGCAGCGGCGGCGACGGCGGCCGAGCAGCAAAGTTCCAATGGCCCTGTAAAGAAGTCCATGCGTGAGAAGGCTGTTGAAAGGAGGAATGTTAATAAAGAGCACAATAGTAACTTCAAAGCTGGATATATTCCGATTGATGAAGATCGTCTCCATAAAACAGGATTGAGAGGGAGAAAGGGCAATTTAGCCATCTGTGTGATTATCCTCTTATTTATCCTGGCTGTCATCAATTTAATTATAACTCTTGTTATCTGGGCTGTGATTCGAATTGGACCAAATGGCTGTGACAGCATGGAGTTTCATGAAAGTGGTCTGCTTCGATTTAAGCAAGTGTCTGACATGGGAGTTATTCATCCTCTTTATAAGAGCACAGTAGGAGGAAGGCGAAATGAAAACTTGGTCATCACTGGCAACAACCAGCCTATTGTTTTTCAGCAAGGGACAACAAAGCTCAGTGTAGAAAAGAACAAAACTTCTATTACGAGTGACATTGGTATGCAGTTTTTTGACCCAAGGACTCAAAATATCTTATTCAGTACAGACTACGAAACTCATGAGTTTCATTTGCCAAGTGGAGTGAAAAGTTTGAATGTTCAAAAAGCATCTACTGAAAGGATTACCAGCAATGCTACCAGTGATTTAAATATAAAAGTTGATGGGCGTGCTATTGTGCGTGGAAATGAAGGAGTATTCATTATGGGCAAAACCATTGAATTTCACATGGGTGGTAATATGGAGTTAAAGGCTGAAAACAGCATCATCCTCAATGGCACTGTGACAGTCAGCACAACTCGCCTGCCCAGCTCCTCCAGTGGAGACCAGTTGGGTGGTGGGGACTGGGTGCGCTACAAGCTCTGCATGTGCGCTGATGGGACTCTCTTCAAAGTGCAAGTGACCAGCCAGAACATGGGCTGCCAAATCTCAGACAATCCCTGTGGAAACACGCGTTAG

Related Sequences

XP_004849785.1 Protein

Sgcb PREDICTED: beta-sarcoglycan isoform X1 [Heterocephalus glaber]

Length: 319 aa      View alignments
>XP_004849785.1
MAAAAAATAAEQQSSNGPVKKSMREKAVERRNVNKEHNSNFKAGYIPIDEDRLHKTGLRGRKGNLAICVIILLFILAVINLIITLVIWAVIRIGPNGCDSMEFHESGLLRFKQVSDMGVIHPLYKSTVGGRRNENLVITGNNQPIVFQQGTTKLSVEKNKTSITSDIGMQFFDPRTQNILFSTDYETHEFHLPSGVKSLNVQKASTERITSNATSDLNIKVDGRAIVRGNEGVFIMGKTIEFHMGGNMELKAENSIILNGTVTVSTTRLPSSSSGDQLGGGDWVRYKLCMCADGTLFKVQVTSQNMGCQISDNPCGNTR