Sequence details NCBI ID: XM_004848283.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Sftpc
Gene Name surfactant protein C
Entrez Gene ID 101713455

Database interlinks

Part of NW_004624758.1 (Scaffold)

For more information consult the page for NW_004624758.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SP-C ENSCPOG00000021731 (Guinea pig)

Gene Details

Surfactant protein C; Uncharacterized protein

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000020670, Guinea pig)

Protein Percentage 88.95%
CDS Percentage 90.18%
Ka/Ks Ratio 0.17177 (Ka = 0.0531, Ks = 0.3088)

SFTPC ENSG00000168484 (Human)

Gene Details

surfactant protein C

External Links

Gene Match (Ensembl Protein ID: ENSP00000316152, Human)

Protein Percentage 87.43%
CDS Percentage 86.21%
Ka/Ks Ratio 0.11465 (Ka = 0.0649, Ks = 0.5662)

Sftpc ENSMUSG00000022097 (Mouse)

Gene Details

surfactant associated protein C

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000022692, Mouse)

Protein Percentage 81.68%
CDS Percentage 83.07%
Ka/Ks Ratio 0.19488 (Ka = 0.1087, Ks = 0.5576)

Sftpc ENSRNOG00000011177 (Rat)

Gene Details

surfactant protein C (Sftpc), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000015032, Rat)

Protein Percentage 82.72%
CDS Percentage 81.5%
Ka/Ks Ratio 0.14073 (Ka = 0.1007, Ks = 0.7155)

Genome Location

Sequence Coding sequence

Length: 576 bp    Location: 17742416..17744664   Strand: +
Raw sequence   
>XM_004848283.1
ATGGACGTGGGTAGCAAAGAGGTCTTGATGGAGAGCCCACCGGACTACTCAGCAGCTCCCCGGGGCCGGTTCGGCATCCCCTGCTGCCCAGTGCACCTCAAACGCCTTCTCATTGTGGTCGTGGTGGTGGTTCTTGTTGTGGTGGTGATCGTAGGGGCCCTGCTCATGGGTCTTCACCTGAGCCAGAAACACACTGAGATGGTTCTCGAGATGAGCATTGGGGCACCGGAAGCCCAGCAGCGCCTGGCCCTGAGTGAGCACATGGGTACCACGGCCACCTTCTCCATCGGCTCCACTGGCATGGTCGTGTATGACTACCAGCGGCTCCTGACAGCCTATAAGCCTGCCCCGGGAACCTGCTGCTACATCATGAAGATGGCTCCAGAGAGCATCCCCAGTCTGGAGGCTCTCACTAGAAAATTCCGGAACTTACAGGGCAAGCCCGCAGCACCTGGCTCTAAGCTGGGCCAGGAGGAGGGACTTGAAGAGGGTTCCGCAGCCTCACCAGAAGATCTGGCTTTCCTGGGCCTCACCGTGCGCACGCTGTGCGGAGAGGTGCCGCTCTACTACATCTAG

Related Sequences

XP_004848340.1 Protein

Sftpc PREDICTED: pulmonary surfactant-associated protein C [Heterocephalus glaber]

Length: 191 aa      View alignments
>XP_004848340.1
MDVGSKEVLMESPPDYSAAPRGRFGIPCCPVHLKRLLIVVVVVVLVVVVIVGALLMGLHLSQKHTEMVLEMSIGAPEAQQRLALSEHMGTTATFSIGSTGMVVYDYQRLLTAYKPAPGTCCYIMKMAPESIPSLEALTRKFRNLQGKPAAPGSKLGQEEGLEEGSAASPEDLAFLGLTVRTLCGEVPLYYI