Sequence details NCBI ID: XM_004848102.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Tspan5
Gene Name tetraspanin 5, transcript variant X1
Entrez Gene ID 101712484

Database interlinks

Part of NW_004624757.1 (Scaffold)

For more information consult the page for NW_004624757.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

TSPAN5 ENSCPOG00000004812 (Guinea pig)

Gene Details

tetraspanin 5

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000004330, Guinea pig)

Protein Percentage 89.14%
CDS Percentage 88.64%
Ka/Ks Ratio 0.21447 (Ka = 0.0707, Ks = 0.3296)

TSPAN5 ENSG00000168785 (Human)

Gene Details

tetraspanin 5

External Links

Gene Match (Ensembl Protein ID: ENSP00000307701, Human)

Protein Percentage 99.63%
CDS Percentage 93.78%
Ka/Ks Ratio 0.00637 (Ka = 0.0017, Ks = 0.2748)

Tspan5 ENSMUSG00000028152 (Mouse)

Gene Details

tetraspanin 5

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000029800, Mouse)

Protein Percentage 99.63%
CDS Percentage 93.16%
Ka/Ks Ratio 0.00547 (Ka = 0.0017, Ks = 0.317)

Tspan5 ENSRNOG00000015913 (Rat)

Gene Details

tetraspanin 5 (Tspan5), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000021381, Rat)

Protein Percentage 99.63%
CDS Percentage 92.79%
Ka/Ks Ratio 0.00509 (Ka = 0.0017, Ks = 0.34)

Genome Location

Sequence Coding sequence

Length: 807 bp    Location: 26733098..26558061   Strand: -
Raw sequence   
>XM_004848102.1
ATGTCCGGGAAGCACTACAAGGGTCCTGAAGTCAGTTGTTGCATCAAGTACTTCATTTTTGGCTTCAATGTCATATTCTGGTTTTTAGGAATAGCATTCCTTGGAATTGGACTGTGGGCCTGGAATGAAAAAGGAGTTCTGTCCAACATCTCCTCGATCACTGACCTCGGCGGCTTTGACCCAGTGTGGCTCTTCCTAGTGGTGGGAGGAGTGATGTTCATCTTGGGGTTTGCAGGGTGCATTGGGGCACTGCGGGAGAACACCTTCCTCCTGAAGTTTTTTTCTGTGTTCCTGGGAATTATTTTCTTCCTGGAGCTCACTGCTGGGGTTTTGGCATTTGTTTTCAAAGACTGGATCAAAGACCAGCTGTATTTCTTTATAAACAACAACATCAGAGCATACAGGGATGACATTGATTTGCAAAACCTCATAGACTTCACCCAGGAATATTGGCAGTGCTGTGGGGCTTTTGGAGCTGATGATTGGAACCTAAATATTTACTTCAATTGCACAGATTCCAATGCAAGTCGAGAGCGATGTGGCGTGCCGTTCTCCTGCTGCACTAAAGACCCCGCGGAAGATGTCATCAACACTCAGTGTGGCTATGACGCCAGGCAGAAACCAGAAGTCGACCAGCAGATCGTAATCTACACAAAAGGATGTGTGCCCCAGTTTGAGAAGTGGCTGCAGGACAATTTAACCATCGTGGCTGGCATCTTCATAGGCATTGCACTGCTGCAGATTTTTGGGATATGCCTGGCCCAGAACTTGGTTAGTGACATTGAAGCTGTCCGGGCCAGCTGGTAG

Related Sequences

XP_004848159.1 Protein

Tspan5 PREDICTED: tetraspanin-5 isoform X1 [Heterocephalus glaber]

Length: 268 aa      View alignments
>XP_004848159.1
MSGKHYKGPEVSCCIKYFIFGFNVIFWFLGIAFLGIGLWAWNEKGVLSNISSITDLGGFDPVWLFLVVGGVMFILGFAGCIGALRENTFLLKFFSVFLGIIFFLELTAGVLAFVFKDWIKDQLYFFINNNIRAYRDDIDLQNLIDFTQEYWQCCGAFGADDWNLNIYFNCTDSNASRERCGVPFSCCTKDPAEDVINTQCGYDARQKPEVDQQIVIYTKGCVPQFEKWLQDNLTIVAGIFIGIALLQIFGICLAQNLVSDIEAVRASW