Sequence details NCBI ID: XM_004844955.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Plxnc1
Gene Name plexin C1, transcript variant X1
Entrez Gene ID 101715429

Database interlinks

Part of NW_004624750.1 (Scaffold)

For more information consult the page for NW_004624750.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PLXNC1 ENSCPOG00000008984 (Guinea pig)

Gene Details

plexin C1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000008071, Guinea pig)

Protein Percentage 94.39%
CDS Percentage 93.73%
Ka/Ks Ratio 0.14333 (Ka = 0.0279, Ks = 0.1945)

PLXNC1 ENSG00000136040 (Human)

Gene Details

plexin C1

External Links

Gene Match (Ensembl Protein ID: ENSP00000258526, Human)

Protein Percentage 91.0%
CDS Percentage 90.66%
Ka/Ks Ratio 0.15996 (Ka = 0.0469, Ks = 0.2933)

Plxnc1 ENSMUSG00000074785 (Mouse)

Gene Details

plexin C1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000096939, Mouse)

Protein Percentage 89.92%
CDS Percentage 87.39%
Ka/Ks Ratio 0.11766 (Ka = 0.0552, Ks = 0.4688)

Plxnc1 ENSRNOG00000007970 (Rat)

Gene Details

plexin C1

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000011178, Rat)

Protein Percentage 88.97%
CDS Percentage 86.63%
Ka/Ks Ratio 0.12583 (Ka = 0.0626, Ks = 0.4973)

Genome Location

Sequence Coding sequence

Length: 4710 bp    Location: 12777235..12640561   Strand: -
Raw sequence   
>XM_004844955.1
ATGGAGGTCTCCCGGAGGAAGGCGCCGCCGCGCCCCCCGCGCCCCGCCGCTCCGCTGCCCCTGCTCGCCTATCTTCTGGCGCTCGCGGCGCCCTCCCGGGGCGCGGACGAGCCGGTGTGGCGCGCGGAGCAAGCCATCGGAGCCATCGCGGCCAGCCTGAGGGACGGCGTGTTCGTGGCGAGCGGCAGCTGCCTGGACCAGCTGGACTACAGCCTGGAGAACAGGCTCTCGCGCCTGTACCGGGACCAGGCGGGCAACTGCACCGAGCCGGTCTCCCTGGCGCCCCCCGCGCGGCCCCGGCCCGGGAGTAGCTTCAGCAAGCTGCTGCTGCCCTACCGCGAGGGGGCAGAAGAGCTCGGGGGGCTGCTGCTCACCGGCTGGACCTTCGACCGGGGCGCCTGCGAGGTGCGGCCCCTGGGCAACCTGAGCCTCAGCTCCCTGCTCAACAGCACCGAGGTGGTGTCGTGCCACCCGCAGGGCTCGACGGCCGGCGTGGTGTACCGCGCGGGGCCCAAGAACAGCTGGTACCTGGCGGTGGCCGCTACCTACGTGCTGCCGGAGCCGGAGACCGCGAGCCGCTGCAGCCCCGCGGCTTCCGATCGAGACACGGCCATCACGCTCAAGAACACGGAGCGCAGCCTGGCCACGGAGGAGCTGGGCCGCCTCAAGCTGCGAGGGAGCTCGGGCAGCCTGCACTTCGTGGACGCCTTTCTCTGGAACGGCAGCGTCTACTTCCCCTACTACCCCTACAACTACACTAGCGGCGCCACCACTGGCTGGCCCAGCATGGTGCGCATCGCGCAGAGCGCTGATGCCCTGTTTCAGGGTCAGGCGGCCCTCGACTGCAGCCATGGACATCCCGACGGCCGCCCCCTGCTGCTCTCCTCCAGCCTGGTGGAAGCCCTGGACATTTGGGCGGGCGTGTTCAGCGCTCCCACCGGAGAGGGCCAGGAGAGGCGCACCCGCGCCACTACCGCGCTGTGCCTCTTCAGGATGAGTGAGATCCAGGCGCGCGCCAAGAGCTGCAGCTGGGACTTCGAGACCCAGCAGAACTGCAAAGAAGGGGATCAACCTGAGAGAGTACAGCCCATCGCATCCTCTACCTTGATCCATTCCGACCTGACATCCGTTTATGGCACCGTGGTATTGAACAGGACTGTTTTATTCTTGGGGACTGGAGATGGCCAGTTGCTTAAGGTTATTCTTGGTGAGAATTTGACTTCAAATTGTCCAGAGGTTATCTATGAAATTAAAGAAGAAACACCTGTTTTCTACAAACTTGTTCCTGACCCTAGGAAGAAGAGCTACATCTATCTCACAGCTGGGAAAGAGGTGAGGAGAATTCGTGTTGCGAACTGCAGTAAACATAAATCCTGTTCAGAGTGCCTAACAGCGGCAGACCCCCACTGTGGTTGGTGCCACTTGCTACAAAGGTGTACTTTTAAAGAAGATTGTGTAGAGTCAAAGCACTTTGAAAACTGGCTGGATATTTCATCTGGAGCTAAAGAGTGCCCTAAAATTCAGATAACTCGAAGCAGCAGAGATAAGACCACTGTGACCGTGGTGGGACCCTTCTCTTCAAGGCGCTCAGAGTGCGTGGTGAAGAACATGGACACCAGCAAGGTGCTCTGCCAGGAGAGAAGTCAGGAAAACCAGGCCTGCACCTGTATCCTCCTCACCAGGCCAAGCTACCGAGATGTCTTACTTGTCAACGTGACGTTCTCCTTCGGTTTTTTAAATTTATCAGAAAGATTCAACTTTACCAACTGCTCATCATTAAGAGAATGCTCAGCATGCACTGGAACTGGCTGTGCTTGGTGTAAGCGTGAAAGAAAGTGCATCCACCCCTTCACCTTCTGTGACCCTTCTGAATATGAGAGAAACCAGGAACTCTGTCACGTTGCCCTGGAGAAGCCGCCGAAGACACCCGGAGGAGGAAGATTCAAGGAGACTAGCAGTAACAGGACCCACCCAGGTCCCCAGGTCTTCCACATTAAGGCCATTGAGCCACAGAAAATATCAACCTTAGGAAAAAGTAACGTGATCGTAACAGGAGCAAACTTTACCCGGGCATCAAACATCACGATGATCCTGAAAGGAACCAGCACTTGTGATAAGGATGTGATACAGGTTAGCCATGTGCTAAATGACACCCACATGAAATTTTCTCTTCCATCGAGCCGGAAAGAAATGAAGGACGTGTGTATCCAGTTCGATGGTGGGAACTGCTCTTCTGTAGGAGCGTTATCCTACATTGCTCTGCCACACTGTTCCCTTATCTTTCCTGCTACCACCTGGATCAGTGGTGGTCAAAATATAACAATCATGGGCAGAAATTTTGATGTAATCGACAGCTTAATCATTTCACAGGAGCTAAAAGAAAACATAAATGTCTCTGAATATTGTGGGTCGAATTTCTGCAGGTTTTTAGCCCCCAATTTAAAGAGTTCAAAAGTGCGTCCAAACGTGGTGGTGAAGCTGAGAGTACAAGACACCTACTTGGACTGCGGAACCTTGCAGTATCTTGAGGACCCCAGATTTACAGGATATCGAGTAGAATCGGAGGTTGATACAGAACTGGAAGTAAAAATCCAAAAAGAAAATGACAACTTTAACATTTCCATGAAAGACATTGAAATTACGCTCTTCCATGGGGAAAATAGGCCATTAAATTGCAGTTTTGAAAATATTACTAGAAACCAAGATCTCACCACCATCCTCTGCAAAATTAAGGGCATCAAGGATGCGAACAGCATTGCCACCTCTTCCAAGAAAGTTCGAGTGAAACTGGGAAACCTGGAGCTCTACGTAGAACAGGAGTCGGTTCCTTCCACCTGGTACTTTCTGATTGTGCTTCCTGTCTTGCTCGTGATTGTCATTTTTGCGGCTGTGGGGGTGACCAGGCAGAAATCAAAGGAGCTAAGTCGCAAACAGAGTCAACAGCTGGAACTCCTGGAAAGCGAACTCCGGAAGGAAATACGTGACGGCTTTGCTGAGCTGCAGATGGATAAATTGGATGTGGTTGATAGTTTTGGAACTGTTCCCTTCCTTGACTACAAACATTTTGCTCTGAGAACTTTCTTCCCTGAGTCAGGTGGCTTCACACACATCTTCACCGAAGATATGCACAACAGAGATGCCAATGAGAAGAATGAAAGTCTCACAGCTTTGGATGCACTCATCTGTAATAAAAGCTTTCTCGTCACCGTCATCCACACGCTTGAAAAGCAGAAGAACTTCTCAGTAAAGGACAGGTGTCTGTTTGCCTCCTTCTTGACCATCGCTCTACAAACCAAGCTGGTCTACCTGACCAGCATCCTCGAGGTGCTGACCAGGGACCTGATGGAGCAGTGCAGCAACATGCAGCCCAAACTCATGCTCCGACGCACAGAGTCAGTGGTGGAAAAGCTGCTCACAAACTGGATGTCGGTCTGCCTCTCTGGTTTCCTCCGGGAGACTGTTGGAGAGCCCTTCTACTTGCTGGTGACGACTCTGAACCAGAAAATAAACAAGGGGCCCGTAGACGTGATCACCTGCAAAGCGCTGTACACCCTGAACGAAGACTGGCTGCTGTGGCAGGTCCCCGAGTTCAGCACTGTGGCATTAAACGTTGTCTTTGAAAAAATCCCAGAAAATGAGAGTGCAGATGTCTGTCGGAATATTTCAGTCAATGTTCTTGACTGTGATACCATAGGCCAAGCCAAAGAAAAGATTTTCCAAGCCTTCTTAAGCAAAAATGGCTCTCCTTATGGACTGCAGCTCAACGAGATTGGTCTTGAGCTTCAAGTGGGCACACGACAAAAAGAACTTGTGGATATCGACAGCTCCTCTGTGATTCTTGAAGATGGAATAACCAAGCTCAATACCATCGGCCACTACGAGATATCAAATGGATCCACTATAAAAGTCTTTAAGAAGATAGCAAATTTTACTTCAGATGTGGAATACACCGATGACCACTGCCATTTGATTTTACCAGATTCAGAAGCCTTCCAAGATGTGCAAGGAAAGAGACATCGAGGGAAACACAAGTTCAAAGTAAAAGAAATGTATTTGACAAAGCTGTTGTCAACCAAGGTAGCAATTCACTCTGTGCTTGAAAAACTTTTCAGAAGCATTTGGAGTTTGCCCAACAGCAGAGCCCCATTTGCTATAAAATACTTTTTTGACTTTCTGGATGCCCAGGCTGAAAACAAAAAAATCACAGATCCTGATGTCGTACATATTTGGAAAACAAACAGCCTTCCTCTTCGCTTTTGGGTCAACATCCTGAAGAACCCTCAGTTTGTCTTTGACATTAAGAAGACACCACACATAGACGGCTGTTTGTCAGTGATTGCCCAGGCATTCATGGACGCCTTTTCTCTCACCGAGCAACAGCTAGGGAAGGAAGCACCAACTAATAAGCTTCTCTATGCCAAGGATATCCCAACCTACAAAGAGGAAGTAAAATCTTATTATAAAGCAATCAGGGATTTGCCTCCATTGTCATCTTTAGAAATGGAAGAATTCTTAACTCAGGAATCTAAGAAACACGAAAATGAATTTAATGAAGAAGTGGCCTTGACAGAAATCTACAAATACATCGTAAAATATTTTGATGAGATTCTAAATAAACTAGAAAGAGAACGAGGGCTGGAAGAAGCTCAGAAACAACTCTTGCATGTTAAAGTCTTATTTGATGAAAAGAAGAAATGCAAGTGGATATAA

Related Sequences

XP_004845012.1 Protein

Plxnc1 PREDICTED: plexin-C1 isoform X1 [Heterocephalus glaber]

Length: 1569 aa      View alignments
>XP_004845012.1
MEVSRRKAPPRPPRPAAPLPLLAYLLALAAPSRGADEPVWRAEQAIGAIAASLRDGVFVASGSCLDQLDYSLENRLSRLYRDQAGNCTEPVSLAPPARPRPGSSFSKLLLPYREGAEELGGLLLTGWTFDRGACEVRPLGNLSLSSLLNSTEVVSCHPQGSTAGVVYRAGPKNSWYLAVAATYVLPEPETASRCSPAASDRDTAITLKNTERSLATEELGRLKLRGSSGSLHFVDAFLWNGSVYFPYYPYNYTSGATTGWPSMVRIAQSADALFQGQAALDCSHGHPDGRPLLLSSSLVEALDIWAGVFSAPTGEGQERRTRATTALCLFRMSEIQARAKSCSWDFETQQNCKEGDQPERVQPIASSTLIHSDLTSVYGTVVLNRTVLFLGTGDGQLLKVILGENLTSNCPEVIYEIKEETPVFYKLVPDPRKKSYIYLTAGKEVRRIRVANCSKHKSCSECLTAADPHCGWCHLLQRCTFKEDCVESKHFENWLDISSGAKECPKIQITRSSRDKTTVTVVGPFSSRRSECVVKNMDTSKVLCQERSQENQACTCILLTRPSYRDVLLVNVTFSFGFLNLSERFNFTNCSSLRECSACTGTGCAWCKRERKCIHPFTFCDPSEYERNQELCHVALEKPPKTPGGGRFKETSSNRTHPGPQVFHIKAIEPQKISTLGKSNVIVTGANFTRASNITMILKGTSTCDKDVIQVSHVLNDTHMKFSLPSSRKEMKDVCIQFDGGNCSSVGALSYIALPHCSLIFPATTWISGGQNITIMGRNFDVIDSLIISQELKENINVSEYCGSNFCRFLAPNLKSSKVRPNVVVKLRVQDTYLDCGTLQYLEDPRFTGYRVESEVDTELEVKIQKENDNFNISMKDIEITLFHGENRPLNCSFENITRNQDLTTILCKIKGIKDANSIATSSKKVRVKLGNLELYVEQESVPSTWYFLIVLPVLLVIVIFAAVGVTRQKSKELSRKQSQQLELLESELRKEIRDGFAELQMDKLDVVDSFGTVPFLDYKHFALRTFFPESGGFTHIFTEDMHNRDANEKNESLTALDALICNKSFLVTVIHTLEKQKNFSVKDRCLFASFLTIALQTKLVYLTSILEVLTRDLMEQCSNMQPKLMLRRTESVVEKLLTNWMSVCLSGFLRETVGEPFYLLVTTLNQKINKGPVDVITCKALYTLNEDWLLWQVPEFSTVALNVVFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQVGTRQKELVDIDSSSVILEDGITKLNTIGHYEISNGSTIKVFKKIANFTSDVEYTDDHCHLILPDSEAFQDVQGKRHRGKHKFKVKEMYLTKLLSTKVAIHSVLEKLFRSIWSLPNSRAPFAIKYFFDFLDAQAENKKITDPDVVHIWKTNSLPLRFWVNILKNPQFVFDIKKTPHIDGCLSVIAQAFMDAFSLTEQQLGKEAPTNKLLYAKDIPTYKEEVKSYYKAIRDLPPLSSLEMEEFLTQESKKHENEFNEEVALTEIYKYIVKYFDEILNKLERERGLEEAQKQLLHVKVLFDEKKKCKWI