Sequence details NCBI ID: XM_004844790.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Prdm4
Gene Name PR domain containing 4, transcript variant X2
Entrez Gene ID 101718300

Database interlinks

Part of NW_004624750.1 (Scaffold)

For more information consult the page for NW_004624750.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PRDM4 ENSCPOG00000022385 (Guinea pig)

Gene Details

PR domain containing 4

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000016082, Guinea pig)

Protein Percentage 92.66%
CDS Percentage 88.25%
Ka/Ks Ratio 0.0554 (Ka = 0.0353, Ks = 0.6367)

PRDM4 ENSG00000110851 (Human)

Gene Details

PR domain containing 4

External Links

Gene Match (Ensembl Protein ID: ENSP00000228437, Human)

Protein Percentage 94.34%
CDS Percentage 88.39%
Ka/Ks Ratio 0.05157 (Ka = 0.0271, Ks = 0.5251)

Prdm4 ENSMUSG00000035529 (Mouse)

Gene Details

PR domain containing 4

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000041942, Mouse)

Protein Percentage 91.57%
CDS Percentage 86.37%
Ka/Ks Ratio 0.06653 (Ka = 0.0415, Ks = 0.6237)

Prdm4 ENSRNOG00000004962 (Rat)

Gene Details

PR domain containing 4 (Prdm4), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000006886, Rat)

Protein Percentage 92.7%
CDS Percentage 86.92%
Ka/Ks Ratio 0.05795 (Ka = 0.0355, Ks = 0.6129)

Genome Location

Sequence Coding sequence

Length: 2388 bp    Location: 2077386..2106103   Strand: +
Raw sequence   
>XM_004844790.1
ATGAATGAAATGAACCTGAGCCCAGTGGGGATGGAGCAGCTGACCTCCTCCTCAGTGAGCAATGCCTTACCAGTCTCAGGAGGTCACCTGGGCTTGGCTGCTTCTCCCACGCACAGTGCCATCCCTGCCCCCGGTCTGCCAGTGGCAATTCCAAACCTGGGTCCATCCCTGAGCTCCCTGCCTTCCGCTTTGTCTCTGATGCTTCCAATGGGGATTGGGGATCGTGGGGTGATGTGCGGGTTACCTGAGAGAAACTACACCCTCCCTCCGCCACCTTACCCTCACCTGGAGAGCAGCTACTTCAGAACCATCCTCCCCGGCATTTTATCCTATCTGGCGGACAGGCCACCTCCTCAGTACATCCACCCCAACTCCATAAATGTCGATGGCAATGCAGCGTTATCTATCGCCAACACTCCTTCCGCTCTAGATCCCTATCAGTCCAATGGAAATGTTGGGTTGGAACCAGGCATTGTTTCAATAGACTCTCGTTCTGTGAACACACATGGTGCCCAAAGTCTGCATCCCAGTGATGGCCATGAGGTGGCCTTGGACACCACAATCACCATGGAGAACGTGTCTAGGGTCACCAGCCCAATCTCCACCGATGGAATGGCAGAGGAGCTCGCAATGGAAGGTGTTGCAGGCGAGCACTCCCAAATCCCAAATGGCTCCCGAAGTCACGAACCACTCTCTGTGGATTCTGTGAGCAGCAACCTTGCCGCAGACACCGTGGGACATGGTGGTGTGATCCCCATTCATGGCAGCGGCCTGGAGCTCCCCGTGGTCATGGAGACAGACCACATTACCAGTCGGGTGAGCGGGATGTCTGACAGTGCCCTCAGCGACTCCATCCACACCGTGCCCATGAGCACCAACTCTGTCAGCGTGGCTCTCTCTACCTCACACAACCTTGCCTCCCTAGAGTCGGTTTCTCTCCATGAAGTGGGCCTCAGCCTTGAGCCTGTGGCTGTCTCCTCCATCACCCAGGAGGTTGCTATGGGGACAGGTCACGTGGATGTGTCTTCAGACAGTCTTTCTTTTGTACCGCCTTCACTGCAAATGGAAGACTCCAATTCAAACAAGGAAAATATGGCAACCTTGTTTACAATTTGGTGCACTCTGTGTGACCGAGCCTACCCCTCAGACTGCCCTGACCATGGACCGGTGACTTTCATTCCTGATTCTCCAATAGAGAGTAGAGCGCGGCTGTCTCTCCCGAAGCAGCTTGTTCTGCGCCAGTCAATCGTGGGAGCAGACGTTGGTGTGTGGACCGGAGAGACCATTCCCGTGCGCACTTGCTTTGGGCCTCTGATTGGTCAGCAGAGTCACTCCATGGAGGTGGCCGAGTGGACAGACAAGGCCGTTAACCACATCTGGAAGATCTACCACAGCGGCGTCCTGGAGTTGTGCATTGTCACAACTGACGAGAACGAATGCAACTGGATGATGTTTGTGCGCAAAGCCAGGAATCGGGAAGAGCAGAATTTGGTGGCTTATCCCCATGATGGCAAAATCTATTTCTGTACCTCACAAGACATCCCTCCTGAAAACGAACTGCTTTTCTATTATAGCCGGGACTATGCTCAGCAGATGGTTCCTGAGCACCCAGATGTGCACCTCTGCAACTGTGGGAAGGAGTGCAGCTCCTACACAGAGTTCAAGGCCCATCTGACCAGCCACATCCATAACCACCTCCCCAGCCAGGGCCACGGCGGCAGCCACGGGCCCAGCCACAGCAAGGAGAGGAAGTGGAAGTGCTCCATGTGCCCGCAGGCTTTCATCTCTCCCTCCAAGCTGCATGTCCACTTCATGGGTCACATGGGGATGAAGCCCCACAAGTGTGATTTCTGTAGCAAGGCTTTCAGTGATCCCAGCAACCTGCGGACCCACCTCAAGATACACACAGGCCAGAAGAACTACCGGTGCACTCTGTGTGACAAGTCTTTCACCCAGAAGGCTCACCTGGAGTCCCACATGGTCATCCACACCGGGGAGAAGAACCTCAAGTGTGACTACTGTGACAAGCTGTTCATGCGGAGGCAGGACCTCAGGCAGCACGTGCTCATCCACACGCAAGAACGCCAGATCAAGTGCCCCAGGTGCAACAAGCTGTTCTTGAGGACAAATCACCTAAAGAAGCATCTGAACTCTCACGAAGGCAAGCGCGATTACGTGTGTGAGAAATGCACGAAGGCCTACCTGACCAAGTACCACCTCACCCGCCACCTAAAGACCTGCAAGGGCCCAGCCTCCAGCTCCTCCGCCCTGGACGAGGACGATGAGGACGACTCCGAGGAGGACCTGGTAGAGCCTGTGGGGCCAGAAGGCTGCAGGCTGGGCAGCGCTCTGTACTCAGCAGAGGAGCCCCTCTCAGCGCACAAATGA

Related Sequences

XP_004844847.1 Protein

Prdm4 PREDICTED: PR domain zinc finger protein 4 isoform X2 [Heterocephalus glaber]

Length: 795 aa      View alignments
>XP_004844847.1
MNEMNLSPVGMEQLTSSSVSNALPVSGGHLGLAASPTHSAIPAPGLPVAIPNLGPSLSSLPSALSLMLPMGIGDRGVMCGLPERNYTLPPPPYPHLESSYFRTILPGILSYLADRPPPQYIHPNSINVDGNAALSIANTPSALDPYQSNGNVGLEPGIVSIDSRSVNTHGAQSLHPSDGHEVALDTTITMENVSRVTSPISTDGMAEELAMEGVAGEHSQIPNGSRSHEPLSVDSVSSNLAADTVGHGGVIPIHGSGLELPVVMETDHITSRVSGMSDSALSDSIHTVPMSTNSVSVALSTSHNLASLESVSLHEVGLSLEPVAVSSITQEVAMGTGHVDVSSDSLSFVPPSLQMEDSNSNKENMATLFTIWCTLCDRAYPSDCPDHGPVTFIPDSPIESRARLSLPKQLVLRQSIVGADVGVWTGETIPVRTCFGPLIGQQSHSMEVAEWTDKAVNHIWKIYHSGVLELCIVTTDENECNWMMFVRKARNREEQNLVAYPHDGKIYFCTSQDIPPENELLFYYSRDYAQQMVPEHPDVHLCNCGKECSSYTEFKAHLTSHIHNHLPSQGHGGSHGPSHSKERKWKCSMCPQAFISPSKLHVHFMGHMGMKPHKCDFCSKAFSDPSNLRTHLKIHTGQKNYRCTLCDKSFTQKAHLESHMVIHTGEKNLKCDYCDKLFMRRQDLRQHVLIHTQERQIKCPRCNKLFLRTNHLKKHLNSHEGKRDYVCEKCTKAYLTKYHLTRHLKTCKGPASSSSALDEDDEDDSEEDLVEPVGPEGCRLGSALYSAEEPLSAHK