Sequence details NCBI ID: XM_004841540.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Usp1
Gene Name ubiquitin specific peptidase 1, transcript variant X1
Entrez Gene ID 101716794

Database interlinks

Part of NW_004624742.1 (Scaffold)

For more information consult the page for NW_004624742.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

USP1 ENSCPOG00000010416 (Guinea pig)

Gene Details

ubiquitin specific peptidase 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000015459, Guinea pig)

Protein Percentage 88.39%
CDS Percentage 88.48%
Ka/Ks Ratio 0.18793 (Ka = 0.066, Ks = 0.3515)

USP1 ENSG00000162607 (Human)

Gene Details

ubiquitin specific peptidase 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000343526, Human)

Protein Percentage 90.56%
CDS Percentage 90.48%
Ka/Ks Ratio 0.1414 (Ka = 0.0475, Ks = 0.3362)

Usp1 ENSMUSG00000028560 (Mouse)

Gene Details

ubiquitin specific peptidase 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000030289, Mouse)

Protein Percentage 85.42%
CDS Percentage 85.08%
Ka/Ks Ratio 0.13594 (Ka = 0.0792, Ks = 0.5826)

Usp1 ENSRNOG00000007890 (Rat)

Gene Details

ubiquitin specific peptidase 1 (Usp1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000010935, Rat)

Protein Percentage 85.95%
CDS Percentage 85.06%
Ka/Ks Ratio 0.13113 (Ka = 0.0784, Ks = 0.5976)

Genome Location

Sequence Coding sequence

Length: 2355 bp    Location: 31399752..31390676   Strand: -
Raw sequence   
>XM_004841540.1
ATGCCTGGTGTCATACCTAGTGAAAGTAATGGGCTTTCAAGAGGTAGTCCATCTAAGAAAAACAGACTTTCCTTGAAGTTTTTTCAGAAAAAGGAAACTAAGAGAGCCTTAGATTTTACAGACTCTCAAGAAAATGAAGAAAAAGCTTCTGAATATAGAGGATCAGAAATTGACCAAGTTGTTCCTGCAGCACAGTCCTCACCTATAAACTGTGAGAAGAGAGAAAACTTGCTGCCATTTGTGGGACTGAATAATCTTGGCAATACTTGTTATCTTAATAGTATACTTCAGGTATTATATTTTTGTCCTGGTTTTAAATCTGGAGTGAAGCACTTATTTAATATTATTTCAAAGAAGAAAGAGGCACTAAAGGATGAAGCCAATCAAAAAGACAAGGGAAATTGCAAAGAAGATTCTTTGGCGAGTTATGAACTTATATGCAGTTTACAGTCCTTAATCATTTCAGTGGAACAGCTTCAGGCTAGTTTCCTCCTAAATCCAGAGAAATACACTGATGAGCTTGCTACTCAGCCAAGACGACTGCTTAACACACTCAGGGAACTCAACCCTATGTATGAAGGATATCTACAGCATGATGCACAGGAAGTATTACAGTGTATTTTGGGAAACATTCAAGAAACATGCCAGCTCCTAAAAAAAGAACAAGTAGAAAATGTCACAGAATTCTCTACAAAGGTAGGAGAAAAGCCTCATCAGAAAGAGGAAGTGAGTGGCATTAACAGCAGGGAAATGGACAACATGAGGAATTCCGAGGACTATAAAGAAAAACCTCCAAAAGGGAATGGGAAAAGAAAAAGTGACACTGAATTTGGTAACATGAAGAAAAAAGTCAGAGTTGCCAAGGACCACCAGTCATTGGATGAGAACCAGAGACAAACGAGATCAAAAAGAAAAGCTACTGGGGATACACTGGAGACTCCCCCTAAAGTAATCCCCAAGTTTGTTTCTGAAAGTGAGAGCATAGGACCCTCACAAAAGAAGTCAAGAGTTAAAATAAATTGGTTAAAGTCTGCAACGAAGCAACCCAGCATTCTTTCTAAATTCTGCAGTCTGGGAAAACTAACAGCAAGCCAGGTATCCAAAGGACAGTGTAAAGAAAGCGAGTCTGATCTTGAAGAGAACTTCGGGAAGTACGAAAGCGACAATACAACTCATGGTTGTGGACTTGAATCTCCAGAAGACATCAAACCTATAGATGTTAATGAAGTTAAGCCTATAAACAGAGGTGCAGAACAAATTGGTTTTGAACTAGTGGAAAAATTATTTCAAGGTCAGCTGGTATTGAGGACTCGTTGCTTGGAATGTGAAAGTCTGACAGAAAGAAGAGAAGATTTCCAGGACATCAGTGTACCAGTACAAGAAGACGAGCTCTCCAAAGCAGAGGAGAGTTCTGAAATTTCTCCAGAGCCAAAAACAGAAATGAAGACCTTGAGGTGGGCAATTTCACAGTTTGCTTCGGTGGAGAGGATTGTAGGAGAAGATAAATATTTCTGTGAAAATTGTCATCATTACACTGAAGCTGAACGAAGTCTTCTGTTTGACAAAATGCCTGAAGTTATAACCATTCATTTGAAGTGCTTTGCTGCTAGTGGCTTGGAGTTTGATTGTTATGGTGGTGGACTTTCCAAGATCAACACTCCCTTACTGACACCTCTTAAGTTGTCGCTAGAAGAATGGAGCACAAGGCCAACCAATGACAGCTATGGATTATTTGCAGTTGTAATGCACAGTGGCATTACAATTAGCAGTGGGCATTACACTGCTTCGGTTAAAGTCACCGACCTCAACAGCTTAGAACTGGACAAGGAGAATTTTGTGGTTGACCAGATGTGTGAAGTAAGCAAGCCAGAGCCACTGAATGAGGAGGAAGCAAGGGGTGCAGCTGAAAATTATGACGATGAAGAAGTGTCCATGAGAGTTGGTGGAAATACACAGCCAAGTAAAGTTTTGAACAAAAAAAATGTAGAAGCTATTGGACTTCTTGGAGGACAAAAGAGCAAAGCAGATTATGAGCTCTACAACAAAGCGTCTAATCCTGATAGGGCTGCCAGTACAGCATTTGCTGAAAGTAGAAGTTCTGAGACTAACAGTTCTAATGGGACCCATGAAGTGGACAGGAACCAAGAATCCAGCGACCAAACAGGCATTTACAGGAGTGGATTTGAGAACAAAATTTCCTGTGTAGTGCAAAGTTTAAAGGAGTATGAGGGGAAGTGGCTGCTTTTTGATGATTCTGAAGTGAAAGTTACCGAAGAGAAGGACTTTCTGAATTCTCTTTCCCCTTCTACATCGTCTACATCTACTCCTTACTTGTTGTTTTATAAGAAATTATAG

Related Sequences

XP_004841597.1 Protein

Usp1 PREDICTED: ubiquitin carboxyl-terminal hydrolase 1 isoform X1 [Heterocephalus glaber]

Length: 784 aa      View alignments
>XP_004841597.1
MPGVIPSESNGLSRGSPSKKNRLSLKFFQKKETKRALDFTDSQENEEKASEYRGSEIDQVVPAAQSSPINCEKRENLLPFVGLNNLGNTCYLNSILQVLYFCPGFKSGVKHLFNIISKKKEALKDEANQKDKGNCKEDSLASYELICSLQSLIISVEQLQASFLLNPEKYTDELATQPRRLLNTLRELNPMYEGYLQHDAQEVLQCILGNIQETCQLLKKEQVENVTEFSTKVGEKPHQKEEVSGINSREMDNMRNSEDYKEKPPKGNGKRKSDTEFGNMKKKVRVAKDHQSLDENQRQTRSKRKATGDTLETPPKVIPKFVSESESIGPSQKKSRVKINWLKSATKQPSILSKFCSLGKLTASQVSKGQCKESESDLEENFGKYESDNTTHGCGLESPEDIKPIDVNEVKPINRGAEQIGFELVEKLFQGQLVLRTRCLECESLTERREDFQDISVPVQEDELSKAEESSEISPEPKTEMKTLRWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKMPEVITIHLKCFAASGLEFDCYGGGLSKINTPLLTPLKLSLEEWSTRPTNDSYGLFAVVMHSGITISSGHYTASVKVTDLNSLELDKENFVVDQMCEVSKPEPLNEEEARGAAENYDDEEVSMRVGGNTQPSKVLNKKNVEAIGLLGGQKSKADYELYNKASNPDRAASTAFAESRSSETNSSNGTHEVDRNQESSDQTGIYRSGFENKISCVVQSLKEYEGKWLLFDDSEVKVTEEKDFLNSLSPSTSSTSTPYLLFYKKL