Sequence details NCBI ID: XM_004839481.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Nod1
Gene Name nucleotide-binding oligomerization domain containing 1, transcript variant X4
Entrez Gene ID 101724724

Database interlinks

Part of NW_004624739.1 (Scaffold)

For more information consult the page for NW_004624739.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

NOD1 ENSCPOG00000014360 (Guinea pig)

Gene Details

nucleotide-binding oligomerization domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000012936, Guinea pig)

Protein Percentage 89.29%
CDS Percentage 90.44%
Ka/Ks Ratio 0.1613 (Ka = 0.0572, Ks = 0.3546)

NOD1 ENSG00000106100 (Human)

Gene Details

nucleotide-binding oligomerization domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000222823, Human)

Protein Percentage 82.16%
CDS Percentage 84.85%
Ka/Ks Ratio 0.14776 (Ka = 0.0948, Ks = 0.6414)

Nod1 ENSMUSG00000038058 (Mouse)

Gene Details

nucleotide-binding oligomerization domain containing 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000055747, Mouse)

Protein Percentage 80.67%
CDS Percentage 81.51%
Ka/Ks Ratio 0.10266 (Ka = 0.1037, Ks = 1.0104)

Nod1 ENSRNOG00000010629 (Rat)

Gene Details

nucleotide-binding oligomerization domain containing 1 (Nod1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000014324, Rat)

Protein Percentage 80.9%
CDS Percentage 81.11%
Ka/Ks Ratio 0.09938 (Ka = 0.1034, Ks = 1.0401)

Genome Location

Sequence Coding sequence

Length: 2862 bp    Location: 286045..340090   Strand: +
Raw sequence   
>XM_004839481.1
ATGGAAAAGCAGAGCCATCGTGAGATGGAAGGTGGCCCACCCGGGTCTCACTCCCACATTAGATTTTTGAAGGTCAGCCGGGAACTTCTAGTCACGCACATCCGCAACATTCAGTGTCTGGTGGACAACTTGTTGAAGAATGACTACTTCTCAGTAGAGGACGCAGAGATCGTGTGTGCCTGCCCCACCCAACCTGACAAGGTTCGAAAAATTCTGGACTTGGTACAGAGCAAGGGCGAGGAGGTGTCCGAGTTCTTCCTCTATGTGCTCCAGCAACTTGCAGATGCTTATGTGGACCTCAGGCCATGGCTGTTGGAGATTGGCTTTTCCCCTTCACAGCTCATTCAGAGCAGAAGTATTGTCAACACTGACCCAGTGAGTCGGTACACCCAGAAGCTGCGACACCAGCTGGGCTGCGACTCCAAGTTCATGCTGTGCTATGCGCAGAAGGAGGAGCTGCTGCTGGAGGAGACGTACACGGACACCGTCATGGAGCTGGTGGGCTTCAGCAACGAGAGCCTGGGCAGCCTGGGCAGCCTGGCCTGCCTGCTGGACCCCAGCTTGGGGGTCCTCAATGAGCACGGTGAGACCGTGTTCGTGTGTGGTGACGCGGGCGTGGGCAAGTCCATGCTGCTGCAGCGGCTGCAGAGCCTCTGGGCCTCGGGCCGGCTGGGCGCGGAAATCAAGTTCTTCTTCCACTTCCGCTGCCGCATGTTTAGCTGCTTCAAGGACAGTGACACGCTGAGCCTGCAGGACCTGCTCTTCAAGCACTTCTGCTACCCGGAGCAGGACCCTGACGAGGTGTTCGCCTTCCTGCTGCGCTTTCCCCAGGCGGCGCTCTTCACCTTCGACGGCCTGGACGAGCTGCACTCGGACTTCGACCTGAGCCGCGTGCCGGACACCTGCTGCCCCTGGGAGCCCGCCCACCCGCTGGTCCTGCTGGCCAACCTGCTCAGTGGGCGGCTGCTCCGGGGCGCGCGCAAGTTGCTCACTGCGCGCACGGGCGTCGAGGTGCCACGCCAGCTCCTGCGCAAGAAGGTGCTTCTCCGGGGCTTTTCGCCCAGCCACCTGCGCACCTATGCCCGGAGGATGTTCCCCGAGCGAGCCGTGCAGGCCCGCCTGCTACAGCAGCTAGAGGCCAACCCCAACCTCTGTGGCCTGTGCGCCGTGCCGCTCTTCTGCTGGATCATCTTCCGCTGCTTCCAGCACTTCCACTCCCCCTTCGAGGGCTCCCCGCAGAGGCCCGACTGCACCATGACCCTGACCGACGTCTTCCTGCTGGTCACCGAGGTCCACTTGAACAGGACGCAGCCCCGTAGCCTGGTGCAGCGCAACACGCGAAGCACGGCCGAGACGTTCCGCGCAGGCCTGCGCACGCTGCGCTCGCTGGGCCGGGTGGCCCGCGGCGGCATGGAACAGAACCTCTTCGTGTTCTGCAGTGATGAGGTGGAGGCCTCCGGGCTGCGGGAGCAGGACCTGGCGCTCGGCTTCCTGCGGACCGTGCCCGTGCTGGGCCCCTATGAGGGGCAGCAGTCCTACGAGTTTTTCCACATCACCCTGCAGGCCTTCTTTACGGCCTTCTTTCTCGTGGTGGACGACAAGGTGGGCATGCAGGAGCTGCTCCGGTTCTTCCGAGAGTGGACACCTCCAGGGGAGGCCGCAGCCGCGTCCTGCCTGCCTTCCTTGCTCCCTTTCCAGCGCTGGCGGGGCGGCCGCCCAGCGGGCTCCGACCTGTTCAAGAACAAGGACCATTTTCAGTTCACCAACCTCTTCCTGTGCGGGCTGCTGTCCAAGGCCAGGCAGGAGCTGCTGTGGCACCTGGTGCCGGCCGCCACCCTGAGGAGGAAGCGCCGGGTGCTGTGGGCGCACCTGTGTGCCAGCTTGCGGGCCTACCTGAAGAGCCTGCCCCGGGTGCGCAACGAGGCCTTCAACCAGGTGCAGGCCATGCCCACCTTCCTGTGGATGCTGCGCTGCATCTACGAGACGCAGAGCCAGAAGGTGGCGCGCCTGGCGGCCCGCGGCGTCTGCTCCGACTACCTCAAGCTGAGTTTCTGCAACGCCTGCTCTGCCGACTGCAGCGCCCTCTCCTTCGTCCTCCACCACCTCCACAAGCGCCTGGCCCTCGACCTGGACAACAACAATCTCAATGACTACGGCGTGCGCGAGCTGCAGCCCTGCCTCAGCCGCCTTGTCGTCCTCAGACTCAGCGTCAACCAGATCACTGACAATGGGGTAAAGGCGCTGTGTGAAGAACTGACCAAGTACAAGATTTTGACATTTTTGGGTTTATACAGCAACCAGATCACTGATGTCGGAGCCAGGTACGTCGCCCGGATCCTAGAGGAATGCAAAGGCCTCACCCACCTTAAACTGGGAAAAAACAAAATAACGAGCGAAGGCGGCAAGTGTCTCGCCTTGGCGGTGAAGAACAGCACATGGATCTCTGACCTTGGGATGTGGGGCAATAAGATCGGGGACGAAGGAGCAAAAGCCTTCGCAGAGGCGTTGAGGAACCACCCCAGTCTGACCTTCCTGAGTCTTGCATTCAACGGCATCTCCTCAGAAGGAGGGAAGAGCCTTGCGAAGGCCCTGCAGCACAACACATCTCTGTCAATATTCTGGCTAACCCAAAATGAACTCAATGATGAAGTGGCAGAGAGCTTCGCAGAAATGCTGAAAGTCAATCAGACATTGAAGCACTTATGGCTTATCCAGAATCAGATCACAGCCAAAGGGACTACCCAGCTGGCAGAGGCACTCCGGGAGAACACTGGCATAACGGAGATTTGTCTAAATGGAAATTTGATAAAGCCAGAGGAGGCCAAAGTCTTCGAAGAGGAGAAGCGTCTCGTCTGTTTCTGA

Related Sequences

XP_004839538.1 Protein

Nod1 PREDICTED: nucleotide-binding oligomerization domain-containing protein 1 isoform X4 [Heterocephalus glaber]

Length: 953 aa      View alignments
>XP_004839538.1
MEKQSHREMEGGPPGSHSHIRFLKVSRELLVTHIRNIQCLVDNLLKNDYFSVEDAEIVCACPTQPDKVRKILDLVQSKGEEVSEFFLYVLQQLADAYVDLRPWLLEIGFSPSQLIQSRSIVNTDPVSRYTQKLRHQLGCDSKFMLCYAQKEELLLEETYTDTVMELVGFSNESLGSLGSLACLLDPSLGVLNEHGETVFVCGDAGVGKSMLLQRLQSLWASGRLGAEIKFFFHFRCRMFSCFKDSDTLSLQDLLFKHFCYPEQDPDEVFAFLLRFPQAALFTFDGLDELHSDFDLSRVPDTCCPWEPAHPLVLLANLLSGRLLRGARKLLTARTGVEVPRQLLRKKVLLRGFSPSHLRTYARRMFPERAVQARLLQQLEANPNLCGLCAVPLFCWIIFRCFQHFHSPFEGSPQRPDCTMTLTDVFLLVTEVHLNRTQPRSLVQRNTRSTAETFRAGLRTLRSLGRVARGGMEQNLFVFCSDEVEASGLREQDLALGFLRTVPVLGPYEGQQSYEFFHITLQAFFTAFFLVVDDKVGMQELLRFFREWTPPGEAAAASCLPSLLPFQRWRGGRPAGSDLFKNKDHFQFTNLFLCGLLSKARQELLWHLVPAATLRRKRRVLWAHLCASLRAYLKSLPRVRNEAFNQVQAMPTFLWMLRCIYETQSQKVARLAARGVCSDYLKLSFCNACSADCSALSFVLHHLHKRLALDLDNNNLNDYGVRELQPCLSRLVVLRLSVNQITDNGVKALCEELTKYKILTFLGLYSNQITDVGARYVARILEECKGLTHLKLGKNKITSEGGKCLALAVKNSTWISDLGMWGNKIGDEGAKAFAEALRNHPSLTFLSLAFNGISSEGGKSLAKALQHNTSLSIFWLTQNELNDEVAESFAEMLKVNQTLKHLWLIQNQITAKGTTQLAEALRENTGITEICLNGNLIKPEEAKVFEEEKRLVCF