Sequence details NCBI ID: XM_004839043.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Sdc1
Gene Name syndecan 1
Entrez Gene ID 101723528

Database interlinks

Part of NW_004624738.1 (Scaffold)

For more information consult the page for NW_004624738.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SDC1 ENSCPOG00000008875 (Guinea pig)

Gene Details

syndecan 1

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000007971, Guinea pig)

Protein Percentage 71.18%
CDS Percentage 79.28%
Ka/Ks Ratio 0.28545 (Ka = 0.1815, Ks = 0.6359)

SDC1 ENSG00000115884 (Human)

Gene Details

syndecan 1

External Links

Gene Match (Ensembl Protein ID: ENSP00000370542, Human)

Protein Percentage 71.48%
CDS Percentage 77.96%
Ka/Ks Ratio 0.2712 (Ka = 0.1897, Ks = 0.6996)

Sdc1 ENSMUSG00000020592 (Mouse)

Gene Details

syndecan 1

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000020911, Mouse)

Protein Percentage 66.67%
CDS Percentage 72.84%
Ka/Ks Ratio 0.22 (Ka = 0.2389, Ks = 1.0859)

Sdc1 ENSRNOG00000006396 (Rat)

Gene Details

syndecan 1 (Sdc1), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000008582, Rat)

Protein Percentage 67.45%
CDS Percentage 74.16%
Ka/Ks Ratio 0.22119 (Ka = 0.2217, Ks = 1.0024)

Genome Location

Sequence Coding sequence

Length: 897 bp    Location: 2938014..2920154   Strand: -
Raw sequence   
>XM_004839043.1
ATGGGGCGCGCGGCGCTGTGGCCCTGGGCGTGCGCGCTGGCATTGTGCCTGCGGCCGGCCCTGGCGCAAGTGGTGGCCACAAACCTGCCTCCCGAGGACCAGGACGGCTCCGGGGACGACTCTGACACCTTCTCGGGCTCAGGCGCAGGTGCTTTGCAGGACATCGCCGCGTCCCCGCAGGCCCCCGCCACCGGGAAGGACACGTGGCTGCTGTCCGTCATGCCCACGGTGCCGGAGCCTGGCGGCAGGGAGGCTACAGCCAGCTCCACCCCCGTCCTGCCGGCTGGAGAGAGGCAGGAGGAGGGAGAGGCGGCCGTGCCCATGGGGGCCAGGCCCGACCTCACCGCCCGGGAGGAGGGGGGGGAGCCCAAGCCCAGGGAGCCCACACAGCTCCCCGGCACCCAGAGGGCCCAGGCGCCCACCTCCCCCCACGCCCCCAGGGATGTGCACCCCGGCCTCGCCGAGGGCACAGCTCCTGCAGCGTCAGGCCAGCCTGACGGCCTTGCTCCCAGCGCGGAGGGTGCAGGCCCTTCCGCCACCGAGAGCACCGAGGACGGAGCCCCCAGCCAGCTGCCGGCCGGAGAGGGCTCTGGCGAGCAGGACTTCACCTTTGACTCGTCCGGGGAGAACGTGGCCGTGGCCGCAGTGGATCTGGATGACCGGAGTGAGCCCCCCGTGGGTCAGGGGGCCTCGCAGGGCCTCCTGGGCAGGAAGGAGGTGCTGGGAGGGGTCATCGCCGGAGGCGTCGTGGGGCTCGTCTTTGCCGTGTGCCTGGTGGGCTTCATGCTGTACCGGATGAAGAAGAAGGACGAGGGTAGCTACTCCCTGGAGGAGCCCAAGCAAGCCAATGGTGGCGCCTACCAGAAGCCCACCAAGCAGGAGGAGTTCTATGCCTGA

Related Sequences

XP_004839100.1 Protein

Sdc1 PREDICTED: syndecan-1 [Heterocephalus glaber]

Length: 298 aa      View alignments
>XP_004839100.1
MGRAALWPWACALALCLRPALAQVVATNLPPEDQDGSGDDSDTFSGSGAGALQDIAASPQAPATGKDTWLLSVMPTVPEPGGREATASSTPVLPAGERQEEGEAAVPMGARPDLTAREEGGEPKPREPTQLPGTQRAQAPTSPHAPRDVHPGLAEGTAPAASGQPDGLAPSAEGAGPSATESTEDGAPSQLPAGEGSGEQDFTFDSSGENVAVAAVDLDDRSEPPVGQGASQGLLGRKEVLGGVIAGGVVGLVFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA