Sequence details NCBI ID: XM_004837873.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Psca
Gene Name prostate stem cell antigen, transcript variant X1
Entrez Gene ID 101705338

Database interlinks

Part of NW_004624735.1 (Scaffold)

For more information consult the page for NW_004624735.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

PSCA ENSCPOG00000013169 (Guinea pig)

Gene Details

prostate stem cell antigen

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000011856, Guinea pig)

Protein Percentage 67.77%
CDS Percentage 77.69%
Ka/Ks Ratio 0.25455 (Ka = 0.1876, Ks = 0.7369)

PSCA ENSG00000167653 (Human)

Gene Details

prostate stem cell antigen

External Links

Gene Match (Ensembl Protein ID: ENSP00000301258, Human)

Protein Percentage 68.14%
CDS Percentage 77.58%
Ka/Ks Ratio 0.21514 (Ka = 0.1923, Ks = 0.8936)

Psca ENSMUSG00000022598 (Mouse)

Gene Details

prostate stem cell antigen

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000023265, Mouse)

Protein Percentage 65.85%
CDS Percentage 77.24%
Ka/Ks Ratio 0.3085 (Ka = 0.2056, Ks = 0.6666)

Psca ENSRNOG00000005887 (Rat)

Gene Details

prostate stem cell antigen (Psca), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000007750, Rat)

Protein Percentage 65.85%
CDS Percentage 75.07%
Ka/Ks Ratio 0.26662 (Ka = 0.2183, Ks = 0.8188)

Genome Location

Sequence Coding sequence

Length: 372 bp    Location: 13920881..13918701   Strand: -
Raw sequence   
>XM_004837873.1
ATGAAGGCTGTCCTCCTTGCCCTGCTGGGCATCAGCTTGGCCCTGCAGCCAGGTGCTGCCCTGCAGTGCTATTCCTGTACAGCCCAGATTAGCAACAAGGACTGCCAGAATGTGAAGAACTGCAGCCAAACCGAGACCTACTGCTGGACGTCGCGCGTCCGTGCCATTGGGATCCTGAAGCTCATCAGCAAGGGCTGCACCTCGGACTGTGTGGATGATTCAGACAACTACTACTTGGGCAAGAAAAACATCACCTGCTGCTCCACTAACCTGTGCAACGTCAGCGGGGCCTATGCCCTGCAGCCAGCCAGCACCCTGGGGCTGCTCCCAGTGCTCACTGGCCTGCTACTGTGGGGCTCTGGGCAGCTTTAG

Related Sequences

XP_004837930.1 Protein

Psca PREDICTED: prostate stem cell antigen isoform X1 [Heterocephalus glaber]

Length: 123 aa      View alignments
>XP_004837930.1
MKAVLLALLGISLALQPGAALQCYSCTAQISNKDCQNVKNCSQTETYCWTSRVRAIGILKLISKGCTSDCVDDSDNYYLGKKNITCCSTNLCNVSGAYALQPASTLGLLPVLTGLLLWGSGQL