Sequence details NCBI ID: XM_004835238.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Scn5a
Gene Name sodium channel, voltage-gated, type V, alpha subunit
Entrez Gene ID 101710111

Database interlinks

Part of NW_004624731.1 (Scaffold)

For more information consult the page for NW_004624731.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

SCN5A ENSCPOG00000005240 (Guinea pig)

Gene Details

Uncharacterized protein

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000004709, Guinea pig)

Protein Percentage 96.67%
CDS Percentage 93.07%
Ka/Ks Ratio 0.04154 (Ka = 0.0153, Ks = 0.3681)

SCN5A ENSG00000183873 (Human)

Gene Details

sodium channel, voltage-gated, type V, alpha subunit

External Links

Gene Match (Ensembl Protein ID: ENSP00000410257, Human)

Protein Percentage 93.98%
CDS Percentage 90.67%
Ka/Ks Ratio 0.05748 (Ka = 0.0285, Ks = 0.496)

Scn5a ENSMUSG00000032511 (Mouse)

Gene Details

sodium channel, voltage-gated, type V, alpha

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000112838, Mouse)

Protein Percentage 95.08%
CDS Percentage 89.31%
Ka/Ks Ratio 0.03516 (Ka = 0.0241, Ks = 0.6865)

Scn5a ENSRNOG00000015049 (Rat)

Gene Details

sodium channel, voltage-gated, type V, alpha subunit (Scn5a), transcript variant 1, mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000060180, Rat)

Protein Percentage 95.13%
CDS Percentage 89.36%
Ka/Ks Ratio 0.03145 (Ka = 0.0229, Ks = 0.7279)

Genome Location

Sequence Coding sequence

Length: 6045 bp    Location: 2401380..2498211   Strand: +
Raw sequence   
>XM_004835238.1
ATGGCAAACTTCCTGTTACCTCGGGGCACCAGCAGCTTCCGCAGGTTCACAAGAGAGTCCCTGGCGGCCATCGAGAAGCGCATGGCTGAGAAACAAGCCCAAGGCTCGGCCACCTCACAGGAGACCCATGAGGGGCTACCCGAAGAGGAGGCTCCCCAGCCCCAGCTGGACCTGCAGGCCTCCAAAAAGCTACCAGATCTCTATGGCAACCCACCCCGAGAGCTTATTGGGGAGCCCCTGGAGGACCTGGACCCCTTCTACAGCACCCAAAAGACCTTCATCGTACTGAATAAGGGCAAGACCATCTTCCGTTTCAGTGCCACCAAAGCCTTGTACATCCTCAGTCCCTTCCACCCTGTCCGAAGAGCAGCTGTGAAGATTCTGGTTCATTCGCTCTTCAGCATGCTCATCATGTGCACCATCTTGACCAACTGCGTGTTCATGGCCCAGCATGACCCTCCATCCTGGACCAAATACGTTGAGTACACCTTTACTGCCATCTATACCTTTGAGTCTCTGGTCAAGATTCTGGCTCGAGGCTTCTGCCTGCATGCATTTACCTTCCTCCGGGACCCATGGAACTGGCTGGACTTCAGTGTGATCGTCATGGCATACACAACTGAATTTGTGGACCTGGGCAATGTCTCAGCCTTACGCACCTTCCGAGTCCTCCGGGCCTTGAAAACTATATCAGTCATTTCAGGCCTGAAGACAATCGTGGGGGCCCTGATCCAGTCTGTGAAGAAGCTGGCAGACGTGATGGTCCTCACCGTCTTCTGCCTCAGTGTCTTCGCTCTCATTGGCCTGCAGCTCTTCATGGGCAACCTAAGGCACAAGTGTGTGCGCAACTTCACAGCGCTCAATGACACCAATGGCTCTGTGGAGGCCGAAGGCCTGGTCTGGGAGTCACTGGACCTCTACCTCAATGATCCAGTTAATTACCTGCTCAAGAATGGCACCTCTGACGTGCTACTGTGTGGGAACAGCTCGGATGCCGGGACATGTCCCGAGGGCTACCGATGCCTAAAGGCAGGTGAGAACCCTGACCATGGCTACACCAGCTTCGACTCCTTCGCCTGGGCCTTCCTCGCACTCTTCCGCCTGATGACACAGGACTGCTGGGAACGCCTCTACCAGCAGACCCTGAGGTCCGCAGGGAAGATCTACATGATATTTTTCATGCTTGTCATCTTTCTGGGCTCCTTCTACCTGGTGAACCTGATCCTGGCTGTGGTCGCCATGGCCTACGAGGAACAAAACCAAGCCACTATTGCAGAGACCGAGGAGAAGGAAAAGCGCTTCCAGGAGGCCATGGAGATGCTCAAGAAAGAGCATGAGGCCCTCACCATCAGGGGTGTGGATACTGTGTCCCGTAGCTCCTTGGAGATGTCCCCTCTGGCCCCAGTAACCAACCACGAGAGAAGAAGCAAGAGGAGAAAACGAATGTCTTCAGGAACAGAAGAGTGTGGAGATGAACGGTTTCCCAAGTCTGACTCAGAAGATGGTCCCAGAGCAATGAATCACCTCAGCCTCAGCAGGACTTCAGTGAAGCCTCGCTCCAGCCGAGGGAGCATTTTCACCTTTCGCCGTCGAGACCTGGGGTCCGAGACCGACTTTGCAGATGATGAGAACAGCACAGCAGGGGACAGTGAGAGCCACCGCACATCACTGCTGGTGCCCTGGCCCCTGCGCCGGCCCAGTGCCCAGGGGCAGCCCAGTCCCGGGGCCTCTGCTCCAAGCCATGTCCTCAACGGCAAAAGAAACAGCACCGTGGACTGCAATGGGGTGGTCTCCTTGCTGGGGGCAGGTGACACTGAGGCCATGTCCCCAGGGAGCCGCCTCCTCCGCCCCATGATGCTGGAGCGACCCCCAGACACGACCACACCTTCGGAGGAGCTAGGTGGGGCCCAGATGCTGACGCCCCAGGCTCCGTGTGCAGATGGCTTCGAGGAGCCAGGAGCACGGCAGCGGGCACTCAGTGCAGTCAGCGTCCTCACCAGTGCCCTGGAAGAGTTGGAGGAGTCTCACCGCAAGTGTCCCCCATGCTGGAACCGCTTTGCCGAGCGCTACTTGATCTGGGAGTGCTGTCCGCTGTGGATGTCCATCAAGCAGAAAGTGAAGTTCGTGGTCATGGACCCATTTGCCGACCTCACCATCACCATGTGCATTGTACTCAACACCCTCTTCATGGCGCTGGAGCACTACAACATGACAACCGAATTTGAGGAGATGCTGCAGGTTGGAAACTTGGTCTTCACAGGGATCTTCACAGCAGAAATGACCTTCAAGATCATTGCCCTCGACCCCTACTACTACTTCCAGCAGGGCTGGAACATCTTCGACAGCATCATCGTCATTCTTAGTCTCATGGAGCTGGGCCTGTCCCGTATGGGCAACCTGTCGGTGCTGCGCTCCTTCCGCCTGCTACGGGTCTTCAAGTTGGCCAAATCATGGCCCACCCTGAACACACTCATCAAGATCATCGGGAACTCAGTGGGAGCGCTGGGGAACCTGACGCTGGTGCTGGCCATCATTGTGTTCATCTTTGCTGTGGTGGGCATGCAGCTCTTTGGCAAGAACTACTCAGAGCTGAGGCATCGCATCAGTGACTCAGGCCTGCTGCCACGCTGGCACATGATGGACTTCTTCCATGCTTTCCTCATCATCTTCCGCATACTCTGTGGAGAATGGATCGAGACCATGTGGGACTGCATGGAGGTGTCTGGGCAGTCATTGTGCCTGCTGGTCTTCTTGCTTGTCATGGTCATTGGCAACCTTGTGGTCCTGAACCTCTTCCTGGCCTTGCTGCTCAGCTCCTTCAGTGCAGACAACCTCACAGCCCCCGATGAGGATGGAGAGATGAACAACCTACAGCTGGCCTTGGCCCGCATCCAGCGGGGCCTGCGCTTCATCAAACGGACCACTTGGGACTTCTGCTGTGGGCTCCTGCGGCGGCGGCCTAAGAAGCCTGCGGCCCTGGCTCCCCGCAGTCAGCTGCCCAACTGCATGGCCAGCCCCAGCTCCCCACCACCCCCAGAAGTGGAGAAGGCACCCCCAGCCCGCAAGGAAACACGGTTTGAAGAGGGCAAGTGTCCTGGCCAGGGCGCCCCCGGGGAGCCAGAGCCTGTGTGCGTGCCCATCGCCGTGGCCGAGTCAGACACGGACGACCAGGAGGAGGATGATGAAAACAGTCTGGCCACCGAGGAAGAATCCAGCAAGCAGGAATCCCAGCCTGTGTCTGATGGCCCAGAACCCCCCCAGGAGCCCAGGGCCTGGAGCCAGGGGTCAGAGACCACCTCCTGGGAGGCTGAGGCCAGGGCGTCTCAAGCAGACTGGCGGCAGCAGCGGAAAGCAGAGCCCCAGGCCCCAGGGTGCAGTGAGACCCACGAGGACAGTTACTCTGAAGGTAGCACAGCAGACATGACCAACACTGCTGACCTCCTGGAGCAGATCCCCGACCTCGGCGAGGACGTCAAGGATCCAGAGGACTGCTTCACTGAAGGCTGCATCCGGCGCTGTCCTTGCTGTGCAGTGGACACCACACAGTCCCCAGGGAAGGTCTGGTGGAGACTACGTAAGACCTGCTATCGAATTGTAGAGCACAGCTGGTTCGAGACGTTCATCATTTTCATGATCCTGCTCAGCAGTGGAGCACTGGCCTTTGAGGACATTTACCTGGAGGAGCGGAAGACCATCAAGGTTCTGCTGGAGTACGCAGACAAGATGTTCACCTACGTCTTCGTGCTGGAGATGCTGCTCAAGTGGGTGGCCTATGGCTTCAAGAAGTACTTCACCAATGCCTGGTGCTGGCTGGACTTCCTCATCGTGGACGTCTCGCTGGTCAGCCTGGTGGCCAACACTCTGGGCTTTTCTGAGATGGGCCCCATCAAGTCGCTGCGGACGCTACGTGCCCTCCGACCCCTGAGAGCCCTGTCACGATTTGAGGGCATGAGGGTGGTGGTCAATGCCCTGGTGGGTGCCATCCCATCCATCATGAACGTCCTCCTCGTCTGCCTCATCTTCTGGCTCATCTTCAGCATCATGGGTGTGAACCTCTTTGCGGGGAAGTTTGGGAGGTGCATCAACCAGACTGAGGGAGACCTGCCTTTGAACTACACCATTGTGAACAACAAGAGCGAGTGCGAGTCCTTCAATATGACTGGAGAGTTGTACTGGACCAAGGTGAAGGTCAATTTTGACAACGTTGGGGCCGGGTACCTGGCCCTCCTGCAGGTGGCAACATTTAAAGGCTGGATGGACATCATGTATGCTGCCGTGGACTCAAGAGGGTACGAAGAGCAGCCCCAGTGGGAGTACAACCTCTACATGTACATCTACTTTGTCGTTTTCATCATCTTCGGGTCCTTCTTCACCCTGAACCTTTTCATTGGTGTCATCATTGATAACTTCAACCAACAGAAGAAAAAGTTAGGGGGCCAGGATATCTTCATGACAGAGGAGCAGAAGAAGTACTACAACGCCATGAAGAAGCTGGGCTCCAAGAAGCCCCAGAAGCCCATCCCTCGGCCCCTGAACAAGTACCAGGGCTTCATATTTGATATTGTGACCAAGCAAGCCTTTGATGTCACCATTATGTTTCTTATCTGCTTGAATATGGTGACCATGATGGTAGAGACTGATGACCAAAGCCCTGAAAAAGTGAACATCTTGTCCAAGATCAACTTGCTCTTCGTGGCCATCTTCACAGGCGAGTGTATTGTCAAGATGACTGCCCTGCGCCACTATTACTTCACCAACAGCTGGAACATCTTTGACTTCGTGGTTGTCATCCTCTCCATCGTGGGCACGGTGCTCTCTGACATCATTCAGAAGTACTTCTTCTCCCCGACGCTCTTCCGAGTCATCCGCCTGGCCCGAATTGGCCGCATCCTCCGACTGATCCGAGGGGCCAAGGGGATCCGCACGCTGCTCTTTGCCCTCATGATGTCCCTGCCCGCCCTCTTCAACATTGGGCTGCTGCTCTTCCTTGTCATGTTCATCTACTCCATCTTTGGCATGGCTAACTTTGCTTATGTCAAGTGGGAGGCTGGCATCGACGACATGTTCAACTTCCAGACCTTCGCCAACAGCATGCTGTGCCTCTTCCAGATCACCACATCGGCTGGCTGGGATGGCCTCCTCAGCCCCATCCTCAACACGGGGCCCCCCTACTGCGACCCTAATCTGCCCAACAGCAATGGCTCCCGGGGCAACTGTGGGAGCCCAGCCGTGGGCATCCTCTTCTTCACCACCTACATCATCATCTCCTTCCTCATCGTGGTCAACATGTATATCGCCATCATCCTGGAAAACTTCAGTGTGGCCACAGAGGAGAGCACTGAGCCCCTGAGTGAGGATGACTTTGACATGTTCTATGAAATCTGGGAGAAGTTTGACCCAGAAGCAACCCAGTTCATCGAGTACTCAGCTCTGTCCGACTTTGCCGATGCCCTGTCTGAGCCACTTCGTATCGCCAAGCCCAACCAGATCAGCCTCATCAATATGGACCTGCCTATGGTGAGTGGGGACCGCATCCACTGCATGGACATCCTCTTTGCCTTCACCAAGAGGGTCCTGGGAGAGTCTGGGGAGATGGATGCCCTAAAGATCCAGATGGAGGAGAAGTTCATGGCCGCCAACCCATCCAAGATCTCCTATGAGCCCATCACCACCACGCTCCGGCGCAAGCATGAGGAGGTGTCGGCCACAGTCATCCAGCGGGCCTTCCGGAGGCACCTGCTGCAGCGCTCTGTGAAACATGCCTCCTTCCTCTTCCGCCAGCAGGTGGGCAGTGGTGGCCTCTCGGAAGAGGATGCCCCCGAGCGAGAGGGCCTCATTGCCTACATGTTGAATGAGAACTTCTCCCGGCAGGACAGACCACCCTCCAGCTCCTCCATTTCCTCCACATCCTTCCCACCCTCCTATGACAGTGTCACCAGGGCCACTAGCGATAACCTCCAGGTGAGGGTGTCTGACTATAGCCACAGTGAGGATCTCGCGGACTTTCCCCCATCCCCGGACAGGGACCGAGAGTCGATAGTGTGA

Related Sequences

XP_004835295.1 Protein

Scn5a PREDICTED: sodium channel protein type 5 subunit alpha [Heterocephalus glaber]

Length: 2014 aa      View alignments
>XP_004835295.1
MANFLLPRGTSSFRRFTRESLAAIEKRMAEKQAQGSATSQETHEGLPEEEAPQPQLDLQASKKLPDLYGNPPRELIGEPLEDLDPFYSTQKTFIVLNKGKTIFRFSATKALYILSPFHPVRRAAVKILVHSLFSMLIMCTILTNCVFMAQHDPPSWTKYVEYTFTAIYTFESLVKILARGFCLHAFTFLRDPWNWLDFSVIVMAYTTEFVDLGNVSALRTFRVLRALKTISVISGLKTIVGALIQSVKKLADVMVLTVFCLSVFALIGLQLFMGNLRHKCVRNFTALNDTNGSVEAEGLVWESLDLYLNDPVNYLLKNGTSDVLLCGNSSDAGTCPEGYRCLKAGENPDHGYTSFDSFAWAFLALFRLMTQDCWERLYQQTLRSAGKIYMIFFMLVIFLGSFYLVNLILAVVAMAYEEQNQATIAETEEKEKRFQEAMEMLKKEHEALTIRGVDTVSRSSLEMSPLAPVTNHERRSKRRKRMSSGTEECGDERFPKSDSEDGPRAMNHLSLSRTSVKPRSSRGSIFTFRRRDLGSETDFADDENSTAGDSESHRTSLLVPWPLRRPSAQGQPSPGASAPSHVLNGKRNSTVDCNGVVSLLGAGDTEAMSPGSRLLRPMMLERPPDTTTPSEELGGAQMLTPQAPCADGFEEPGARQRALSAVSVLTSALEELEESHRKCPPCWNRFAERYLIWECCPLWMSIKQKVKFVVMDPFADLTITMCIVLNTLFMALEHYNMTTEFEEMLQVGNLVFTGIFTAEMTFKIIALDPYYYFQQGWNIFDSIIVILSLMELGLSRMGNLSVLRSFRLLRVFKLAKSWPTLNTLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKNYSELRHRISDSGLLPRWHMMDFFHAFLIIFRILCGEWIETMWDCMEVSGQSLCLLVFLLVMVIGNLVVLNLFLALLLSSFSADNLTAPDEDGEMNNLQLALARIQRGLRFIKRTTWDFCCGLLRRRPKKPAALAPRSQLPNCMASPSSPPPPEVEKAPPARKETRFEEGKCPGQGAPGEPEPVCVPIAVAESDTDDQEEDDENSLATEEESSKQESQPVSDGPEPPQEPRAWSQGSETTSWEAEARASQADWRQQRKAEPQAPGCSETHEDSYSEGSTADMTNTADLLEQIPDLGEDVKDPEDCFTEGCIRRCPCCAVDTTQSPGKVWWRLRKTCYRIVEHSWFETFIIFMILLSSGALAFEDIYLEERKTIKVLLEYADKMFTYVFVLEMLLKWVAYGFKKYFTNAWCWLDFLIVDVSLVSLVANTLGFSEMGPIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFGRCINQTEGDLPLNYTIVNNKSECESFNMTGELYWTKVKVNFDNVGAGYLALLQVATFKGWMDIMYAAVDSRGYEEQPQWEYNLYMYIYFVVFIIFGSFFTLNLFIGVIIDNFNQQKKKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPLNKYQGFIFDIVTKQAFDVTIMFLICLNMVTMMVETDDQSPEKVNILSKINLLFVAIFTGECIVKMTALRHYYFTNSWNIFDFVVVILSIVGTVLSDIIQKYFFSPTLFRVIRLARIGRILRLIRGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYSIFGMANFAYVKWEAGIDDMFNFQTFANSMLCLFQITTSAGWDGLLSPILNTGPPYCDPNLPNSNGSRGNCGSPAVGILFFTTYIIISFLIVVNMYIAIILENFSVATEESTEPLSEDDFDMFYEIWEKFDPEATQFIEYSALSDFADALSEPLRIAKPNQISLINMDLPMVSGDRIHCMDILFAFTKRVLGESGEMDALKIQMEEKFMAANPSKISYEPITTTLRRKHEEVSATVIQRAFRRHLLQRSVKHASFLFRQQVGSGGLSEEDAPEREGLIAYMLNENFSRQDRPPSSSSISSTSFPPSYDSVTRATSDNLQVRVSDYSHSEDLADFPPSPDRDRESIV