Sequence details NCBI ID: XM_004835155.1 (Coding sequence)   Best Hit

Details from NCBI annotation

Gene Symbol Clstn2
Gene Name calsyntenin 2
Entrez Gene ID 101724928

Database interlinks

Part of NW_004624730.1 (Scaffold)

For more information consult the page for NW_004624730.1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible homologs of the naked mole-rat gene and compared to it.

CLSTN2 ENSCPOG00000003011 (Guinea pig)

Gene Details

calsyntenin 2

External Links

Gene Match (Ensembl Protein ID: ENSCPOP00000002729, Guinea pig)

Protein Percentage 95.72%
CDS Percentage 93.56%
Ka/Ks Ratio 0.08894 (Ka = 0.0206, Ks = 0.2321)

CLSTN2 ENSG00000158258 (Human)

Gene Details

calsyntenin 2

External Links

Gene Match (Ensembl Protein ID: ENSP00000402460, Human)

Protein Percentage 93.7%
CDS Percentage 89.35%
Ka/Ks Ratio 0.07054 (Ka = 0.0333, Ks = 0.4722)

Clstn2 ENSMUSG00000032452 (Mouse)

Gene Details

calsyntenin 2

External Links

Gene Match (Ensembl Protein ID: ENSMUSP00000035027, Mouse)

Protein Percentage 93.05%
CDS Percentage 88.02%
Ka/Ks Ratio 0.06809 (Ka = 0.0386, Ks = 0.5673)

Clstn2 ENSRNOG00000043085 (Rat)

Gene Details

calsyntenin 2 (Clstn2), mRNA

External Links

Gene Match (Ensembl Protein ID: ENSRNOP00000060748, Rat)

Protein Percentage 92.51%
CDS Percentage 87.01%
Ka/Ks Ratio 0.06987 (Ka = 0.0432, Ks = 0.6189)

Genome Location

Sequence Coding sequence

Length: 2766 bp    Location: 16792091..17177482   Strand: +
Raw sequence   
>XM_004835155.1
ATGACAATCAACAAGCACAAGCCATGGATTGAAACTTCGTATCATGGAGTCATAACTGAGAACAATGACACAGTCATTTTGGACCCACCACTCGTAGCATTGGATAAAGATGCACCGGTTCCTTTTGCAGGAGAAATCTGTGCTTTCAAGATCCATGGCCAGGAGCTGCCCTTCGAGGCTGTGGTGCTCAATAAGACGTCCGGGGAGGGCCGGCTCCGCGCCAGGAGTCCCATTGACTGTGAGCTGCAGAAGGAGTACACGTTCATCATCCAAGCCTATGACTGTGGCGCCGGGCCCCGGGAGACAGCCTGGAAGAAGTCACACAAGGCCGTGGTCCATATCCAGGTAAAGGATGTCAATGAGTTTGCTCCCACCTTCAAAGAGCCAGCCTATAAAGCCATTGTAACAGAGGGCAAGATCTATGACAGCATACTGCAGGTGGAAGCCATAGATGAGGACTGCTCCCCTCAGTACAGCCAGATTTGCAACTATGAAATCGTCACAACAGACGTGCCTTTTGCCATCGACAGAAATGGCAACATCAGGAACACTGAGAAGCTGAGCTATGACAGGCAGCGCCAGTATGAGATCCTAGTGACAGCCTACGACTGTGGACAGAAACCTGCTGCTCAGGATACGCTGGTGCAGGTGGACGTGAAGCCCGTTTGCAAGCCTGGATGGCAAGACTGGACCAAGAGGATTGAGTACCAGCCTGGTTCGGGGAGTCTGCCCTTATTCCCCAGCATCCACCTGGAGACGTGCGATGGAGCTGTGTCCTCTCTCCAGGTCACCGCAGAGCTGCAGACCAACTACATTGGGAAGGGCTGTGACCGGGAGACATACTCCGAGAGATCCCTTCAGAAATTATGTGGAGCCTCCTCTGGCATCATCGACCTCTTGCCATCTCCCAGCACTGCCACCAACTGGACTTCAGGACTGCTGGTGGACAGCAGTGAGATGATCTTTAAGTTTGATGGCAGACAGGGTGCCAAGATTCCAGATGGAATTGTGCCTAAGAACCTGACGGACCAGTTCACCATCACCATGTGGATGAAACATGGCCCCAGCCCCGGTGTGAGGGCTGAGAAGGAAACCATCCTCTGCAACTCAGATAAAACTGAAATGAACCGGCACCACTATGCCCTATATGTGCACAACTGCCGCCTCGTCTTCCTCTTGAGGAAGGACTTTGACCAGGCCGACACCTTTCGCCCTGCAGAGTTCCACTGGAAGCTGGACCAGATTTGTGACAAAGAGTGGCATTACTATGTCATCAATGTGGAGTTTCCTGTGGTCACCCTCTACATGGATGGAGCGACATATGAACCATACTTGGTGACCAATGACTGGCCCATTCATCCATCTCACATTGCCATGCAGCTTACTGTCGGTGCTTGTTGGCAAGGAGGCGAAGTTGCCAAACCACGATTTGCGCAATTCTTCCATGGCAGCCTGGCCAGTCTTACCATCCGCCCTGGGAAAATGGAAAGCCAAAAGGTGATTTCCTGCTTGCAGGCCTGCAAAGAGGGGCTGGATATTAATTCTTTGGAAAGCCTCGGGCAAGGAATAAAGTATCACTTCAACCCCTCACAGTCTATCCTAGTGATGGAAGGAGATGACATTGGGAACGTCAACCGTGCCCTACAGAAGGTCTCCTACATCAACTCCAGGCAGTTCCCGACAGCAGGCGTGCGACGCCTCAGAGTCTCCTCCAAAGTCCAGTGCTTTGGGGAAGACGTGTGCATCAGCATCCCCGATGTGGATGCCTATGTGATGGTCCTGCAAGCCATGGAGCCCCAGATCACTTTGCAGGGCACAGATCACCTATGGAGACAAGCTGCCCAATTCGAAAGTGCCAGAGGTGTGGTCCTCTTCCAGGATATCAAAATTGTGAGCACCTTTGCCAAACCTGAGGCCACTGGGGACATGAAAACCACAGCCCCCAAATCATCAGTCTTAGAAGAAATGCTTCACAACTTGGATTTTTGTGACATTCTGGTGCTTGGAGGGGACCTGGACCCGAGACAGGAGTGCTTGGAACTCAACCACAGTGAGCTCCACCAAAGGCATCTGGATGCCACAAACTCTACTGCAGGCTACTCCATCTATGGTGTGGGCTCCATGAGCTGCTACGAGCAGGTGCTGCGTCACATCTACTACCGCAACTGGCACCCGAGCTCCCTTGAGGGCAGGCGGTTCCGAATCAAGTGTTCAGAACTCAATGGGCGCTACACTAGCAATGAGTTCAACTTGGAGGTCAGTGTGCTACATGAAGTCAGAGTACCAGACAAGGAGCATGTCAACCACCTTATCGTGCAGCCTCCTTTCCTCCAGTCTGCCCATCACCCTGAATCCCGGAGTAGCATCCAGCGCACTTCAGTGGTCCCAAGCATCGCCACGGTTGTCATCATCATCTCCGTGTGCATGCTAGTGTTTGTTGTGGCCATGGGTGTGTACCGAGTTCGGATTGCCCACCAGCACTTCATCCAAGAGACTGAGGCTGCCAAGGAGGCCGAAATGGATTGGGATGATTCTGCACTGACTATCACCGTCAACCCCATGGAGAAACATGTAGAACCAGGACACGGGGAAGATGAGACTGAGGGAGAAGAGGAGGAGGAAGAAGCAGAGGAGGACATCAGCTCCAGCAGCAGCGAGGACAACAGTGAAGGGGAGGAGGAGGAAGAGATGGGCAGAGGCAGACACGGGCAGAGCGGCACCAGGCAAGCCCAGCTGGAGTGGGATGACTCCACCCTGCCCTACTAG

Related Sequences

XP_004835212.1 Protein

Clstn2 PREDICTED: calsyntenin-2 [Heterocephalus glaber]

Length: 921 aa      View alignments
>XP_004835212.1
MTINKHKPWIETSYHGVITENNDTVILDPPLVALDKDAPVPFAGEICAFKIHGQELPFEAVVLNKTSGEGRLRARSPIDCELQKEYTFIIQAYDCGAGPRETAWKKSHKAVVHIQVKDVNEFAPTFKEPAYKAIVTEGKIYDSILQVEAIDEDCSPQYSQICNYEIVTTDVPFAIDRNGNIRNTEKLSYDRQRQYEILVTAYDCGQKPAAQDTLVQVDVKPVCKPGWQDWTKRIEYQPGSGSLPLFPSIHLETCDGAVSSLQVTAELQTNYIGKGCDRETYSERSLQKLCGASSGIIDLLPSPSTATNWTSGLLVDSSEMIFKFDGRQGAKIPDGIVPKNLTDQFTITMWMKHGPSPGVRAEKETILCNSDKTEMNRHHYALYVHNCRLVFLLRKDFDQADTFRPAEFHWKLDQICDKEWHYYVINVEFPVVTLYMDGATYEPYLVTNDWPIHPSHIAMQLTVGACWQGGEVAKPRFAQFFHGSLASLTIRPGKMESQKVISCLQACKEGLDINSLESLGQGIKYHFNPSQSILVMEGDDIGNVNRALQKVSYINSRQFPTAGVRRLRVSSKVQCFGEDVCISIPDVDAYVMVLQAMEPQITLQGTDHLWRQAAQFESARGVVLFQDIKIVSTFAKPEATGDMKTTAPKSSVLEEMLHNLDFCDILVLGGDLDPRQECLELNHSELHQRHLDATNSTAGYSIYGVGSMSCYEQVLRHIYYRNWHPSSLEGRRFRIKCSELNGRYTSNEFNLEVSVLHEVRVPDKEHVNHLIVQPPFLQSAHHPESRSSIQRTSVVPSIATVVIIISVCMLVFVVAMGVYRVRIAHQHFIQETEAAKEAEMDWDDSALTITVNPMEKHVEPGHGEDETEGEEEEEEAEEDISSSSSEDNSEGEEEEEMGRGRHGQSGTRQAQLEWDDSTLPY